Biology Commons^™

The Premammillary Nucleus Of The Hypothalamus Is Not Necessary For Photoperiodic Timekeeping In Female Turkeys (Meleagris Gallopavo), Ashli F. Moore, Vincent M. Cassone, Kevin D. Alloway, Paul A. Bartell

Biology Faculty Publications

In birds, seasonal reproduction is regulated by day length, with long days in the spring activating the hypothalamic-pituitary-gonadal axis and reproductive behaviors. The photoreceptors mediating this process remain unknown, but recently, the premammillary nucleus (PMM) of the hypothalamus has been implicated as the site of photoperiodic signaling in turkeys. We performed electrolytic lesions of the PMM to elucidate its role in the photoactivation and maintenance of egg production in female turkeys. Our results show that ablation of the PMM does not alter the normal lay cycle. No differences were found between lesioned birds and sham controls in the latency to …

Effects Of Predispersal Insect Seed Predation On The Early Life History Stages Of A Rare Cold Sand-Desert Legume, Yi J. Han, Jerry M. Baskin, Dun Y. Tan, Carol C. Baskin, Ming Y. Wu

Biology Faculty Publications

Seed predation by insects is common in seeds of Fabaceae (legume) species with physical dormancy (PY). However, the consequences of insect seed predation on the life history of legumes with PY have been little studied. In the largest genus of seed plants, Astragalus (Fabaceae), only one study has tested the effects of insect predation on germination, and none has tested it directly on seedling survival. Thus, we tested the effects of insect predation on seed germination and seedling growth and survival of Astragalus lehmannianus, a central Asian sand-desert endemic. Under laboratory conditions, seeds lightly predated in the natural habitat …

Landscape-Scale Effects Of Supra-Seasonal Drought On Semi-Aquatic Snake Assemblages, Philip N. Vogrinc, Andrew M. Durso, Christopher T. Winne, John D. Willson

Biology Faculty Publications

Climate change is predicted to alter the frequency and intensity of precipitation events, placing stress on freshwater aquatic ecosystems and their associated wildlife. Thus, understanding interspecific variation in drought sensitivity and the repeatability of those responses across heterogeneous landscapes is critical. Semi-aquatic snakes serve important roles within aquatic ecosystems and several species are threatened. Yet, little is known about the effects of drought on semi-aquatic snake populations or assemblages. We systematically trapped 20 isolated wetlands in South Carolina before (2006) and after (2013) a multi-year supra-seasonal drought to determine drought-induced shifts in occupancy and detection for five semi-aquatic snake species. …

Overdispersed Spatial Patterning Of Dominant Bunchgrasses In Southeastern Pine Savannas, Katherines A. Hovanes, Kyle E. Harms, Paul R. Gagnon, Jonathan A. Myers, Bret D. Elderd

Biology Faculty Research

Spatial patterning is a key natural history attribute of sessile organisms that frequently emerges from and dictates potential for interactions among organisms. We tested whether bunchgrasses, the dominant plant functional group in longleaf pine savanna groundcover communities, are nonrandomly patterned by characterizing the spatial dispersion of three bunchgrass species across six sites in Louisiana and Florida. We mapped bunchgrass tussocks of >5.0 cm basal diameter in three [Formula: see text] plots at each site. We modeled tussocks as two-dimensional objects to analyze their spatial relationships while preserving sizes and shapes of individual tussocks. Tussocks were overdispersed (more regularly spaced than …

Drivers And Mechanisms Of Tree Mortality In Moist Tropical Forests, Nate G. Mcdowell, Craig D. Allen, Kristina Anderson-Teixeira, Paulo Brando, Roel J. W. Brienen, Jeff Chambers, Bradley O. Christoffersen, Stuart Davies, Alvaro Duque, Fernando Espiritu-Santo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Tree mortality rates appear to be increasing in moist tropical forests (MTFs) with significant carbon cycle consequences. Here, we review the state of knowledge regarding MTF tree mortality, create a conceptual framework with testable hypotheses regarding the drivers, mechanisms and interactions that may underlie increasing MTF mortality rates, and identify the next steps for improved understanding and reduced prediction. Increasing mortality rates are associated with rising temperature and vapor pressure deficit, liana abundance, drought, wind events, fire and, possibly, CO2 fertilization-induced increases in stand thinning or acceleration of trees reaching larger, more vulnerable heights. The majority of these mortality drivers …

Egg Turning Behavior And Incubation Temperature In Forster’S Terns In Relation To Mercury Contamination, Gregory Taylor, Joshua Ackerman, Scott A. Shaffer

Faculty Publications, Biological Sciences

Egg turning behavior is an important determinant of egg hatchability, but it remains relatively understudied. Here, we examined egg turning rates and egg temperatures in Forster’s terns (Sterna forsteri). We used artificial eggs containing a data logger with a 3-D accelerometer, a magnetometer, and a temperature thermistor to monitor parental incubation behavior of 131 tern nests. Overall, adults turned their eggs an average (±SD) of 3.8 ± 0.8 turns h-1, which is nearly two times higher than that of other seabirds. Egg turning rates increased with nest initiation date. We also examined egg turning rates and egg temperatures in relation …

Maternal High-Fat Diet Associated With Altered Gene Expression, Dna Methylation, And Obesity Risk In Mouse Offspring, Madeline Rose Keleher, Rabab Zaidi, Shyam Shah, M. Elsa Oakley, Cassondra Pavlatos, Samir El Idrissi, Xiaoyun Xing, Daofeng Li, Ting Wang, James M. Cheverud

Biology: Faculty Publications and Other Works

We investigated maternal obesity in inbred SM/J mice by assigning females to a high-fat diet or a low-fat diet at weaning, mating them to low-fat-fed males, cross-fostering the offspring to low-fat-fed SM/J nurses at birth, and weaning the offspring onto a high-fat or low-fat diet. A maternal high-fat diet exacerbated obesity in the high-fat-fed daughters, causing them to weigh more, have more fat, and have higher serum levels of leptin as adults, accompanied by dozens of gene expression changes and thousands of DNA methylation changes in their livers and hearts. Maternal diet particularly affected genes involved in RNA processing, immune …

Microrna-223 Suppresses The Canonical Nf-Kb Pathway In Basal Keratinocytes To Dampen Neutrophilic Inflammation, Wenqing Zhou, Arpita S. Pal, Alan Yi-Hui Hsu, Theodore Gurol, Xiaoguang Zhu, Sara E. Wirbisk-Hershberger, Jennifer L. Freeman, Andrea L. Kasinski, Qing Deng

Department of Biological Sciences Faculty Publications

MicroRNA-223 is known as a myeloid-enriched anti-inflammatory microRNA that is dysregulated in numerous inflammatory conditions. Here, we report that neutrophilic inflammation (wound response) is augmented in miR-223-deficient zebrafish, due pri- marily to elevated activation of the canonical nuclear factor kB (NF-kB) pathway. NF-kB over-activation is restricted to the basal layer of the surface epithelium, although miR-223 is detected throughout the epithe- lium and in phagocytes. Not only phagocytes but also epithelial cells are involved in miR-223-medi- ated regulation of neutrophils’ wound response and NF-kB activation. Cul1a/b, Traf6, and Tab1 are iden- tified as direct targets of miR-223, and their levels …

Effect Of The Specific Carbohydrate Diet On The Microbiome Of A Primary Sclerosing Cholangitis And Ulcerative Colitis Patient, Alanna Dubrovsky, Christopher Kitts

Biological Sciences

A 20-year-old female was diagnosed with ulcerative colitis (UC) at age 14 and primary sclerosing cholangitis (PSC) at age 16. The PSC was successfully treated with high doses of oral vancomycin; however, the UC was more difficult to manage. After many drug treatments failed to treat the UC, the patient began following the specific carbohydrate diet (SCD). This report documents fecal microbiome changes resulting from following the SCD for two weeks. The DNA extracted from fecal samples was subjected to 16S rRNA gene sequencing to quantify bacterial species abundance. Not only were substantial changes in the fecal bacterial composition detectable …

Reducing Pseudoscientific And Paranormal Beliefs In University Students Through A Course In Science And Critical Thinking, James A. Wilson

Biology Faculty Publications

No abstract provided.

Draft Genome Sequence Of An Active Heterotrophic Nitrifier-Denitrifier, Cupriavidus Pauculus Um1, Catherine Putonti, Nathaniel Polley, Domenic Castignetti

Bioinformatics Faculty Publications

Here, we present the draft genome sequence of Cupriavidus pauculus UM1, a metal-resistant heterotrophic nitrifier-denitrifier capable of synthesizing nitrite from pyruvic oxime. The size of the genome is 7,402,815 bp with a GC content of 64.8%. This draft assembly consists of 38 scaffolds.

Draft Genome Sequence Of The Siderophore-Degrading Soil Bacterium Mesorhizobium Loti Strain Lu, Domenic Castignetti, Nathaniel Polley, Catherine Putonti

Bioinformatics Faculty Publications

Here, we present the draft genome of Mesorhizobium loti strain LU, a soil bacterium capable of degrading the trihydroxamate siderophore deferrioxamine B to its constituent monohydroxamic acids. Genome size was 6,399,828 bp, with a GC content of 61.5%. This draft genome consists of 35 scaffolds, with an N50 of 389,921 bp.

Deep-Sea Hydrothermal Vents As Natural Egg-Case Incubators At The Galapagos Rift, Pelayo Salinas-De-Leon, Brennan Phillips, David A. Ebert, Mahmood S. Shivji, Florencia Cerutti-Pereyra, Cassandra Ruck, Charles R. Fisher, Leigh Marsh

Biology Faculty Articles

The discovery of deep-sea hydrothermal vents in 1977 challenged our views of ecosystem functioning and yet, the research conducted at these extreme and logistically challenging environments still continues to reveal unique biological processes. Here, we report for the first time, a unique behavior where the deep-sea skate, Bathyraja spinosissima, appears to be actively using the elevated temperature of a hydrothermal vent environment to naturally “incubate” developing egg-cases. We hypothesize that this behavior is directly targeted to accelerate embryo development time given that deep-sea skates have some of the longest egg incubation times reported for the animal kingdom. Similar egg …

Draft Genome Sequence Of An Active Heterotrophic Nitrifier-Denitrifier, Cupriavidus Pauculus Um1, Catherine Putonti, Nathaniel Polley, Domenic Castignetti

Biology: Faculty Publications and Other Works

Here, we present the draft genome sequence of Cupriavidus pauculus UM1, a metal-resistant heterotrophic nitrifier-denitrifier capable of synthesizing nitrite from pyruvic oxime. The size of the genome is 7,402,815 bp with a GC content of 64.8%. This draft assembly consists of 38 scaffolds.

Fluorescence Intensity And Lifetime Quenching Of Ceria Nanoparticles As Optical Sensor For Tiny Metallic Particles, Effat Samir, Nader Shehata, Ishac Kandas

Biology Faculty Publications

Ceria nanoparticles are studied as optical probe for different types of tiny metallic particles using fluorescence quenching technique. The synthesized ceria nanoparticles are characterized by having formed charged oxygen vacancies, which can be considered as the main receptors for the used tiny metallic particles to be sensed or absorbed. Under near-UV excitation, the visible fluorescent emission intensity is found to be reduced with increasing the concentration of the studied tiny metallic particles in an aqueous solution. To emphasize the optical sensing process, ceria nanoparticles fluorescence lifetime measurements were demonstrated before and after adding the tiny metallic particles. In addition, Stern– …

Wilms Tumor 1b Defines A Wound-Specific Sheath Cell Subpopulation Associated With Notochord Repair, Juan Carlos Lopez-Baez, Daniel J. Simpson, Laura Lleras Forero, Zhiqiang Zeng, Hannah Brunsdon, Angela Salzano, Alessandro Brombin, Cameron Wyatt, Witold Rybski, Leonie F A Huitema, Rodney M. Dale, Koichi Kawakami, Christoph Englert, Tamir Chandra, Stefan Schulte-Merker, Nicholas D. Hastie, E Elizabeth Patton

Biology: Faculty Publications and Other Works

Regenerative therapy for degenerative spine disorders requires the identification of cells that can slow down and possibly reverse degenerative processes. Here, we identify an unanticipated wound-specific notochord sheath cell subpopulation that expresses Wilms Tumor (WT) 1b following injury in zebrafish. We show that localized damage leads to Wt1b expression in sheath cells, and that wt1b⁺cells migrate into the wound to form a stopper-like structure, likely to maintain structural integrity. Wt1b⁺sheath cells are distinct in expressing cartilage and vacuolar genes, and in repressing a Wt1b-p53 transcriptional programme. At the wound, wt1b⁺and entpd5⁺ cells constitute …

Impact Of Mid-Season Sulphur Deficiency On Wheat Nitrogen Metabolism And Biosynthesis Of Grain Protein, Zitong Yu, Angela Juhasz, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma

Grain and Other Field Crops Research Articles

Wheat (Triticum aestivum) quality is mainly determined by grain storage protein compositions. Sulphur availability is essential for the biosynthesis of the main wheat storage proteins. In this study, the impact of different sulphur fertilizer regimes on a range of agronomically important traits and associated gene networks was studied. High-performance liquid chromatography was used to analyse the protein compositions of grains grown under four different sulphur treatments. Results revealed that sulphur supplementation had a significant effect on grain yield, harvest index, and storage protein compositions. Consequently, two comparative sulphur fertilizer treatments (0 and 30 kg ha−1 sulphur, with 50 …

Temperature Drives Epidemics In A Zooplankton-Fungus Disease System: A Trait-Driven Approach Points To Transmission Via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, Spencer R. Hall

School of Biological Sciences: Faculty Publications

Climatic warming will likely have idiosyncratic impacts on infectious diseases, causing some to increase while others decrease or shift geographically. A mechanistic framework could better predict these different temperature-disease outcomes. However, such a framework remains challenging to develop, due to the nonlinear and (sometimes) opposing thermal responses of different host and parasite traits and due to the difficulty of validating model predictions with observations and experiments. We address these challenges in a zooplanktonfungus (Daphnia dentifera–Metschnikowia bicuspidata) system. We test the hypothesis that warmer temperatures promote disease spread and produce larger epidemics. In lakes, epidemics that start earlier and warmer in …

Fatty Acid And Associated Gene Expression Analyses Of Three Tree Peony Species Reveal Key Genes For Α-Linolenic Acid Synthesis In Seeds, Qing-Yu Zhang, Rui Yu, Li-Hang Xie, Mahbubur Rahman, Aruna Kilaru, Li-Xin Niu, Yan-Long Zhang

ETSU Faculty Works

The increasing demand for healthy edible oil has generated the need to identify promising oil crops. Tree peony (Paeonia section Moutan DC.) is a woody oil crop with α-linolenic acid contributing for 45% of the total fatty acid (FA) content in seeds. Molecular and genetic differences that contribute to varied FA content and composition among the wild peony species are however, poorly understood. Analyses of FA content and composition during seed development in three tree peony species (P. rockii, P. potaninii, and P. lutea) showed varied FA content in the three species with highest in P. rockii, followed by P. …

The Critically Endangered Forest Owlet Heteroglaux Blewitti Is Nested Within The Currently Recognized Athene Clade: A Century-Old Debate Addressed, Pankaj Koparde, Prachi Mehta, Sushma Reddy, Uma Ramakrishnan, Shomita Mukherjee, V. V. Robin

Biology: Faculty Publications and Other Works

Range-restricted species generally have specific niche requirements and may often have unique evolutionary histories. Unfortunately, many of these species severely lack basic research, resulting in poor conservation strategies. The phylogenetic relationship of the Critically Endangered Forest Owlet Heteroglaux blewitti has been the subject of a century-old debate. The current classifications based on non-phylogenetic comparisons of morphology place the small owls of Asia into three genera, namely, Athene, Glaucidium, and Heteroglaux. Based on morphological and anatomical data, H. blewitti has been alternatively hypothesized to belong within Athene, Glaucidium, or its own monotypic genus Heteroglaux. …

Digging Out The Devils: Molecular Examination Of Amoeba-Like Cells From Cranial Tissue Of The Endangered Rio Grande Silvery Minnow, Brandon Hamel

Undergraduate Research Symposium

The Rio Grande Silvery Minnow (Hybognathus amarus) is a critically endangered species native to the southwestern United States. Since the 1990s its population has declined dramatically due to extensive human alteration of the Rio Grande for agriculture and civil development. This has resulted in habitat degradation and impedance to proper migration, resulting in the minnow now occupying only 5% of its historical range. An active restocking and recovery program is underway through the US Fish and Wildlife Service involving breeding programs at three New Mexico sites. In the summer of 2012, aquaculture specimens began exhibiting an unusual spinning …

The Groundwater Crisis, Austin Shwatal '20, Ethan Tse '20

UN Sustainable Development Goals Infographics

What is Groundwater? Groundwater is simply any water that is found in underground permeable rock layers known as aquifers

Industrial Impact, Sravani Ponnaluri '20, Emily Gonda '20

UN Sustainable Development Goals Infographics

Industries burn fossil fuels to create goods which releases carbon dioxide into the atmosphere. CO2 contributes to 20% of the world's greenhouse effect, and the level of it in the atmosphere has increased to over 400 ppm when before the French Revolution it fluctuated between 180-280 ppm (NASA, 2016). The coal industry is a big contributor as it contributes to 35% of the total U.S. energy related CO2 emissions (EIA, 2017). This all leads to global warming, which causes rising sea levels, longer plant growing seasons, and an increase in forest fires (NASA).

Threats To Ocean Biodiversity, Allia Lin '20, Grace Wulffraat '20

UN Sustainable Development Goals Infographics

Overfishing

Taking fish out of the ocean faster than their populations can be naturally replenished

Coastal Waters, Alison Deng '20, Winny Liu '20

UN Sustainable Development Goals Infographics

Coastal water, specifically coastal erosion, has been a growing problem due to human impact.

Acinetobacter Bacteriophage Discovery In Soil, Michael Plaskett

Rose-Hulman Undergraduate Research Publications

The Acinetobacter genus is home to a wide range of bacteria that are gram-negative, aerobic, non-motile, oxidase-negative, catalase positive, and coccobacilli with a G+C content of 39 to 47% (Bergogne-Berezin, 1996). These bacteria are universal as they reside in the soil, water, sewage, various surfaces; and are also able to infect humans; however, a majority of the infections are caused by the species Acinetobacter baumannii. This bacterium is the most prevalent etiological cause of the Acinetobacter infections due to it being a nosocomial infection or one that is acquired in a health care setting. The infections that occur in a …

Investigating The Response Of Magnetotactic Bacteria To Varying Field Strength And Developing Autonomous Analysis Of Spatial Dispersal, Madeleine D. Pasco

Rose-Hulman Undergraduate Research Publications

Magnetotactic bacteria (MTB) are single-celled organisms which contain organelles called “magnetosomes,” membrane-bound ferrous nanocrystals. These organelles allow for magnetotaxis, which is movement guided by magnetic fields. MTB are generally found in the top layers of sediment of aqueous environments, and magnetotaxis is thought to help guide these microbes to ideal oxygen concentrations in the water after they may have been displaced by turbulent waters. In this we study the effect of the strength of a magnetic field on magnetotaxis.

Mode And Rate Of Evolution Of Haemosporidian Mitochondrial Genomes: Timing The Radiation Of Avian Parasites, Patricia Parker, M Pacheco, Nubia Matta, Gediminas Valkiūnas, Beatriz Mello, Craig Stanley, Miguel Lentino, Maria Garcia-Amado, Michael Cranfield, Sergei Pond, Ananias Escalante

Biology Department Faculty Works

Haemosporidians are a diverse group of vector-borne parasitic protozoa that includes the agents of human malaria; however, most of the described species are found in birds and reptiles. Although our understanding of these parasites’ diversity has expanded by analyses of their mitochondrial genes, there is limited information on these genes’ evolutionary rates. Here, 114 mitochondrial genomes (mtDNA) were studied from species belonging to four genera: Leucocytozoon, Haemoproteus, Hepatocystis, and Plasmodium. Contrary to previous assertions, the mtDNA is phylogenetically informative. The inferred phylogeny showed that, like the genus Plasmodium, the Leucocytozoon and Haemoproteus genera are not monophyletic groups. Although sensitive to …

The Effect Of Cold Acclimation On Active Ion Transport In Cricket Ionoregulatory Tissues., Lauren E Des Marteaux, Soheila Khazraeenia, Gil Y Yerushalmi, Andrew Donini, Natalia G Li, Brent J Sinclair

Biology Publications

Cold-acclimated insects defend ion and water transport function during cold exposure. We hypothesized that this is achieved via enhanced active transport. The Malpighian tubules and rectum are likely targets for such transport modifications, and recent transcriptomic studies indicate shifts in Na+-K+ ATPase (NKA) and V-ATPase expression in these tissues following cold acclimation. Here we quantify the effect of cold acclimation (one week at 12 °C) on active transport in the ionoregulatory organs of adult Gryllus pennsylvanicus field crickets. We compared primary urine production of warm- and cold-acclimated crickets in excised Malpighian tubules via Ramsay assay at a range of temperatures …

Maternal Egg Hormones In The Mating Context: The Effect Of Pair Personality, S. Ruuskanen, T. G. G. Groothuis, Alexander T. Baugh, S. V. Schaper, B. De Vries, K. Van Oers

Biology Faculty Works

1. Animal personality traits emerge developmentally from the interaction of genetic and early environmental factors. Maternal hormones, such as androgens (testosterone, T and androstenedione, A4), transferred to embryos and egg yolks may simultaneously organize multiple behavioural and physiological traits. Although previous studies demonstrated an association between the mother's personality and yolk androgen levels, the independent effects of the male partner's personality and pair combination remains unknown. 2. We test this association using an ecological model species for personality research, the great tit (Parus major) using multiple approaches: (1) a wild population, (2) a randomly mated captive population and (3) an …