Biology Commons^™

Correlates Of Immune Defenses In Golden Eagle Nestlings, Benjamin M. Dudek, Julie A. Heath

Biology Faculty Publications and Presentations

An individual’s investment in constitutive immune defenses depends on both intrinsic and extrinsic factors. We examined how Leucocytozoon parasite presence, body condition (scaled mass), heterophil-to-lymphocyte (H:L) ratio, sex, and age affected immune defenses in golden eagle (Aquila chrysaetos) nestlings from three regions: California, Oregon, and Idaho. We quantified hemolytic-complement activity and bacterial killing ability, two measures of constitutive immunity. Body condition and age did not affect immune defenses. However, eagles with lower H:L ratios had lower complement activity, corroborating other findings that animals in better condition sometimes invest less in constitutive immunity. In addition, eagles with Leucocytozoon infections had higher …

Functional Analysis Of Microrna Pathway Genes In The Somatic Gonad And Germ Cells During Ovulation In C. Elegans, Carmela Rios, David Warren, Benjamin Olson, Allison L. Abbott

Biological Sciences Faculty Research and Publications

MicroRNAs (miRNAs) are post-transcriptional regulators of gene expression that play critical roles in animal development and physiology, though functions for most miRNAs remain unknown. Worms with reduced miRNA biogenesis due to loss of Drosha or Pasha/DGCR8 activity are sterile and fail to ovulate, indicating that miRNAs are required for the process of oocyte maturation and ovulation. Starting with this penetrant sterile phenotype and using new strains created to perform tissue specific RNAi, we characterized the roles of the C. elegans Pasha, pash-1, and two miRNA-specific Argonautes, alg-1 and alg-2, in somatic gonad cells and in germ cells in the regulation …

Simulations Reveal The Power And Peril Of Artificial Breeding Sites For Monitoring And Managing Animals, Christopher J.W. Mcclure, Benjamin P. Pauli, Julie A. Heath

Biology Faculty Publications and Presentations

Despite common use, the efficacy of artificial breeding sites (e.g., nest boxes, bat houses, artificial burrows) as tools for monitoring and managing animals depends on the demography of target populations and availability of natural sites. Yet, the conditions enabling artificial breeding sites to be useful or informative have yet to be articulated. We use a stochastic simulation model to determine situations where artificial breeding sites are either useful or disadvantageous for monitoring and managing animals. Artificial breeding sites are a convenient tool for monitoring animals and therefore occupancy of artificial breeding sites is often used as an index of population …

Forecasting Disturbance Effects On Wildlife: Tolerance Does Not Mitigate Effects Of Increased Recreation On Wild Lands, B. P. Pauli, R. J. Spaul, J. A. Heath

Biology Faculty Publications and Presentations

There is widespread evidence that human disturbance affects wildlife behavior, but long-term population effects can be difficult to quantify. Individual-based models (IBMs) offer a way to assess population-level, aggregate effects of disturbance on wildlife. We created TRAILS (Tolerance in Raptors and the Associated Impacts of Leisure Sports), an IBM that simulates interactions between recreationists and nesting raptors, to assess the effect of human disturbance on raptor populations and test if changes in tolerance to disturbance could mitigate negative consequences. We used behavioral and demographic data from golden eagles (Aquila chrysaetos), and recreation activity data to parameterize TRAILS and …

Life Line June 2017, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

Research presented at Intl. Coral Reef Symposium - Mussels - South African Internship Experience - EHS Degree Coming - Otterbein Rock Garden - Nicaragua - Chris Shockley

Oncolytic Tanapoxvirus For Melanoma Therapy, Tiantian Zhang

Dissertations

Oncolytic viruses (OVs), which preferentially infect cancer cells and induce host anti- tumor immune responses, have emerged as an effective melanoma therapy. Tanapoxvirus (TPV), which possesses a large genome and causes mild self-limiting disease in humans, is potentially an ideal OV candidate. The purposes of our studies are to engineer TPV into effective OVs via arming immumo-stimulatory proteins and/or manipulating the virokines, and to explore the immuno-modulatory activities of TPV.

Interleukin-2 (IL-2) plays a critical role in activating T cells, natural killer cells and macrophages in both the innate and adaptive immune systems. In our study, a recombinant TPV expressing …

Integrative Analysis To Evaluate Similarity Between Brcaness Tumors And Brca Tumors, Weston Reed Bodily

Theses and Dissertations

The term "BRCAness" is used to describe breast-cancer patients who lack a germline mutation in BRCA1 or BRCA2, yet who are believed to express characteristics similar to patients who do have a germline mutation in BRCA1 or BRCA2. Although it is hypothesized that BRCAness is related to deficiency in the homologous recombination repair (HRR) pathways, relatively little is understood about what drives BRCAness or what criteria should be used to assign patients to this category. We hypothesized that patients whose tumor carries a genomic or epigenomic aberration in BRCA1 or BRCA2 should be classified under the BRCAness category and that …

The 'Pseudomonas Aeruginosa' Psl Polysaccharide Is A Social But Noncheatable Trait In Biofilms, Yasuhiko Irie, Aled E. Roberts, Kasper N. Kragh, Vernita D. Gordon, Jaime B. Hutchison, Rosalind J. Allen, Gavin Melaugh, Thomas Bjarnsholt, Stuart A. West, Stephen P. Diggle

Biology Faculty Publications

Extracellular polysaccharides are compounds secreted by microorganisms into the surrounding environment, and they are important for surface attachment and maintaining structural integrity within biofilms. The social nature of many extracellular polysaccharides remains unclear, and it has been suggested that they could function as either cooperative public goods or as traits that provide a competitive advantage. Here, we empirically tested the cooperative nature of the PSL polysaccharide, which is crucial for the formation of biofilms in Pseudomonas aeruginosa. We show that (i) PSL is not metabolically costly to produce; (ii) PSL provides populationlevel benefits in biofilms, for both growth and antibiotic …

Meditation Experience Associated With Structural Neuroplasticity, Mir Saleem, Pallavi Samudrala

Biology Faculty Articles

The intention of the review is to evaluate several studies regarding meditation and its association with structural neuroplasticity. The analysis of the studies would be evaluated based on its methods and results, with respect to the implications of various physiological findings as well as the different ways in which neuroplasticity is measured. Sources were gathered from numerous journals and literature posted online. Databases at the Alvin Sherman Library were utilized to further the research process. To synthesize ideas, a holistic approach was taken to the research process, and studies regarding meditation's effects on the chemical, molecular, and genetic aspects of …

Sub-Lethal And Lethal Effects Of A Neonicotinoid Pesticide On The Development Of Northern Leopard Frog Tadpoles., Travis A. Moe

All NMU Master's Theses

Well-known global declines in amphibian populations have sparked decades of studies into potential causes (Stuart et al. 2004). Pesticides are a suspected contributor to declining populations (Bruhl et al. 2013). Imidacloprid is the most widely used insecticide in the world, but few studies have considered its potential effects on anurans. I conducted a static-renewal experiment to monitor the lethal and sub-lethal, developmental effects in Northern leopard frog tadpoles exposed to three concentration levels (250 ng/L, 8.5 mg/L, and 85 mg/L) of imidacloprid in a laboratory setting. Survivorship was 0% by day 23 of exposure to imidacloprid at the previously lowest …

Effects Of Food Consumption On Cell Proliferation In The Brain Of Python Regius, Stacy Star Habroun

Master's Theses

Neurogenesis is an important and vastly under-explored area in reptiles. While the ability to generate new brain cells in the adult mammalian brain is limited, reptiles are able to regenerate large populations of neuronal cells. Pythons exhibit a characteristic specific dynamic action (SDA) response after food intake with an increase in metabolic rate that facilitates processing the meal. Associated with this change in SDA, pythons (Python spp.) also exhibit impressive plasticity in their digestive and cardiovascular physiology due to the sheer magnitude of the increase in organ growth that occurs after a meal to speed digestion, absorption, and assimilation of …

Effects Of Eggshell Removal On Embryonic Skeletal Development In The American Alligator (Alligator Mississippiensis), Nelson Armando Membreno

Electronic Theses, Projects, and Dissertations

The eggshell of reptiles is essential for not only protecting the embryo, but can also serve as source of calcium for embryonic skeletal development. Whereas embryonic lepidosaurs and chelonians rely on their yolk sac for calcium during development, embryonic archosaurs mobilise eggshell calcium supply to both the embryo and the yolk sac. By the time archosaurs hatch, their residual yolk sacs have a calcium content equal or greater than at time of oviposition, which is used to support post-hatching growth. To date, no study has looked into how removal of the calcareous eggshell affects embryonic development in archosaurs. I tested …

The Population Genetics Of Morro Bay Eelgrass (Zostera Marina), Julia Gardner Harencar

Master's Theses

Seagrass populations are in decline worldwide. Zostera marina (eelgrass), one of California’s native seagrasses, is no exception to this trend. In the last 8 years, Morro Bay, California has lost 95% of its eelgrass. Eelgrass is an ecosystem engineer, providing important ecosystem services such as sediment stabilization, nutrient cycling, and nursery habitats for fish. The failure of recent restoration efforts necessitates a better understanding of the causes of eelgrass decline in this estuary. Previous research on eelgrass in California has demonstrated a link between population genetic diversity and eelgrass bed health, ecosystem functioning, and resilience to disturbance and extreme climatic …

The Santa Ana Speckled Dace (Rhinichthys Osculus): Phylogeography And Molecular Evolution Of The Mitochondrial Dna Control Region, James Jay Vanmeter

Electronic Theses, Projects, and Dissertations

The purpose of this genetic study of the Santa Ana Speckled Dace Rhinichthys osculus was three-fold. The first goal was to characterize the molecular structure of the mtDNA control region of R. osculus. An 1143 base-pair region of the mitochondrial DNA genome, which included the complete control region was sequenced for all individuals. Analysis of the sequence data revealed that the molecular structure of the speckled dace control region was similar to the molecular structure described for other vertebrate taxa. The speckled dace control region contains three major domains, which vary in base frequency as well as in the frequency …

Nitrogen Addition And Ecosystem Functioning: Changes In Species Composition Leaf Traits Amplify Increases In Leaf Area Index And Canopy Chlorophyll, Anna R. Tatarko

School of Biological Sciences: Dissertations, Theses, and Student Research

Increased nutrient inputs can cause shifts in plant community composition and plant functional traits, both of which affect ecosystem function. We studied community- and species-level changes in specific leaf area (SLA), chlorophyll, leaf thickness, leaf toughness, plant height and leaf dry matter content (LDMC) in a full factorial nitrogen (N), phosphorus (P), potassium (K) fertilization experiment in a semi-arid grassland. Nitrogen was the only nutrient addition to significantly affect leaf functional traits, and N addition increased community weighted SLA by 19%, leaf chlorophyll content by 34%, height by 26%, and resulted in an 11% decrease in LDMC while leaf thickness …

Transition From Cardiovascular Disease To Cancer As The Leading Cause Of Death In Us States, 1999-2014, Michael C. Harding, Evan Thacker

Journal of Undergraduate Research

In 1900 the three leading causes of death in the United States were pneumonia and influenza; tuberculosis; and gastritis, enteritis, and colitis.¹ However, through a combination of improved sanitation, the discovery of antibiotics, and the advent of vaccination programs, deaths from infectious diseases subsided and soon gave way to chronic diseases.² Shortly after the turn of the century, diseases of the heart became of the number one cause of death, and in the 1940s, cancer began consistently appearing at number two. Since then, heart disease and cancer have remained firmly entrenched as the number one and two causes …

Seasonally Managed Connectivity Of An East Florida Mosquito Impoundment To Increase Emigration Of Juvenile Snook And Tarpon From The Nursery Habitat, Anthony Carl Cianciotto

Theses and Dissertations

Mangrove marshes are nursery habitats for juveniles of many fishes, including snook (Centropomus undecimalis) and tarpon (Megalops atlanticus), which are important recreational fisheries species in Florida. Thousands of acres of mangrove marshland in the Indian River Lagoon (IRL) have been impounded for mosquito control. Most of these impoundments are under Rotational Impoundment Management (RIM), in which culverts connecting to the IRL are closed in the summer to control mosquito reproduction, and opened Oct-May to allow water exchange. We conducted a quantitative assessment of the emigration of juvenile snook and tarpon from the Bee Gum Point Nature Preserve impoundment in Vero …

Mechanisms And Functions Of Spatial Protein Quality Control, Emily M. Sontag, Rahul S. Samant, Judith Frydman

Biological Sciences Faculty Research and Publications

A healthy proteome is essential for cell survival. Protein misfolding is linked to a rapidly expanding list of human diseases, ranging from neurodegenerative diseases to aging and cancer. Many of these diseases are characterized by the accumulation of misfolded proteins in intra- and extracellular inclusions, such as amyloid plaques. The clear link between protein misfolding and disease highlights the need to better understand the elaborate machinery that manages proteome homeostasis, or proteostasis, in the cell. Proteostasis depends on a network of molecular chaperones and clearance pathways involved in the recognition, refolding, and/or clearance of aberrant proteins. Recent studies reveal that …

Characterizing The Impacts Of Contaminants On Fish Embryogenesis And Revealing An Alternate Molecular Mechanism Of Ahr Mediated Cardiac Defects, Corinna Singleman

Dissertations, Theses, and Capstone Projects

There is a long history of damage to natural ecosystems from environmental pollution. Many environmental contaminants are man-made and have been released with abandon over the last 100 years including dioxins, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), and polychlorinated biphenyls (PCBs). These chemicals act on similar cellular processes and cause skin lesions, cancer, learning disabilities and reproductive problems in many vertebrates. There are many studies exploring various aspects of TCDD and PCB exposure on model and wild organisms. Few studies however, have compared effects of PCB mixtures on ecosystems to effects of individual PCBs in the lab. The first aim of this thesis is …

Resaca Supports Range Expansion Of Invasive Apple Snails (Pomacea Maculata Perry, 1810; Caenogastropoda: Ampullariidae) To The Rio Grande Valley, Texas, Kathryn E. Perez, Victoria Garcia Gamboa, Caitlin M. Schneider, Romi L. Burks

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Resacas, or oxbow lakes, form from old river channels. In the Rio Grande, resacas provide habitat for diverse wildlife, including native and non-native species. Biologists unexpectedly found pink egg masses on emergent vegetation (November 2015) and later adult apple snails (May 2016) within a resaca at a former fish hatchery in Brownsville, Texas. This report extends the non-native range of Pomacea maculata Perry, 1810 by 429 km southeast in Texas. Our findings imply that abandoned waterbodies, such as fish hatcheries, can act as unrecognized conduits for non-native invasive species.

Experimental Evolution With Caenorhabditis Nematodes, Henrique Teotónio, Suzanne Estes, Patrick C. Phillips, Charles F. Baer

Biology Faculty Publications and Presentations

The hermaphroditic nematode Caenorhabditis elegans has been one of the primary model systems in biology since the 1970s, but only within the last two decades has this nematode also become a useful model for experimental evolution. Here, we outline the goals and major foci of experimental evolution with C. elegans and related species, such as C. briggsae and C. remanei, by discussing the principles of experimental design, and highlighting the strengths and limitations of Caenorhabditis as model systems. We then review three exemplars of Caenorhabditis experimental evolution studies, underlining representative evolution experiments that have addressed the: (1) maintenance of genetic …

Interaction Between Predation Environment And Diet Constrains Body Shape In Utah Chub, Gila Atraria (Cypriniformes: Cyprinidae), Trevor J. Williams, Jerald B. Johnson, Mark C. Belk

Faculty Publications

Evolution typically occurs in response to a suite of selective pressures. Yet, many studies of natural selection in the wild only investigate a single selective agent at a time. This can be problematic when selective agents act in non-additive ways. Here we evaluate the interactive effects of diet and predation on the evolution of body shape in the cyprinid fish Utah chub (Gila atraria). We found that both factors and the interaction between them are significant predictors of body shape. This interaction is likely a result of different forms of selective pressures, where predation is a stabilizing selective …

A Spiny Water Flea Invasion And Effects On The Zooplankton Community In Southern Green Bay, Lake Michigan, Casey Ann Merkle

Lawrence University Honors Projects

The spiny water flea (Bythotrephes longimanus) is an invertebrate aquatic invasive species (AIS) in the Great Lakes that competes with native fish species for zooplankton, perhaps contributing to a decline of fish populations or changes in zooplankton communities in Lake Michigan. Bythotrephes produce two types of eggs, immediately hatching versus resting eggs which are tolerant to harsh conditions and allow for rapid dispersal. We determined Bythotrephes population density and population dynamics in Green Bay during the summer months of 2015 and 2016. Population dynamics were similar at both sites in Green Bay in each year, with peak population …

The Weevil Next Door: Exploring The Impact Of Associational Effects On C. Pitcheri To Better Biological Control Practices, Tina Czaplinska

Lawrence University Honors Projects

Lake Michigan dwelling dune thistle, Circium pitcheri, is a federally threatened plant, whose reproduction is affected by a non-native weevil, Larinus planus. Originally introduced as a biological control agent to combat the spread of Canada thistle, Circium arvense, this weevil is instead using C. pitcheri as a host for its larvae. Associational susceptibility is an important factor to consider in hopes of preventing the damage to this endangered plant. The goal of this study was to observe L. planus behavior to determine why there is a correlation between increased density of beach grass and high levels of C. …

The Effect Of Resource Quality And Species Interactions On The Colonization Behavior Of The Black Blow Fly, Phormia Regina (Meigen), Melissa N. Branker

Student Theses

During decomposition, there are many different insects groups that utilize carrion as a resource. In particular, blow flies (Order: Diptera; Family: Calliphoridae) are considered to be a forensically important family due to their ability to rapidly locate and colonize a carrion resource. As a result, blow flies are commonly used as indicator species in PMI estimations. However, recent research indicates that the colonization behavior of these species can be influenced by a variety of abiotic and biotic factors. In this study, the effects of arrival order, resource quality and bacterial or species cues on the oviposition behavior of Phormia regina …

Splice Site Predictor, Mark Wadsworth, Dr. Perry G. Ridge

Journal of Undergraduate Research

With the advent of nextgeneration sequencing, one of the unintended consequences is the sheer number of genomic variations requiring interpretation. Mutations in splice sites have been shown to contribute to the development of cancer [1], and dementia [2] among other potentially deadly disorders. Roughly 14 million people are diagnosed with cancer every year [3], and roughly 7 million with dementia [4]. Since these diseases cause an incredible amount of suffering, scientists in all fields are driven to search for ways to identify and treat them. These have been particularly difficult to interpret and have been largely ignored by the bioinformatics …

Flies As Bioindicators Of Grazing Pressures In Mongolia, Rebecca Clement, C. Riley Nelson

Journal of Undergraduate Research

For over fifty thousand years, humans have affected their surrounding environments in a negative way. As the human population continues to increase, concerns about extinction and other human-influenced problems including climate change, habitat degradation, pollution and introduction of invasive species are becoming more and more difficult to ignore (Oreskes, 2004). Mongolia, with its low population density and richly diverse biogeographical landscape, has retained much of the biota that has been lost in surrounding more populous Asian countries. Much of the fauna is relatively unknown. A growing concern in Mongolia is the commercialization of grazing. Although grazing has been an integral …

Damselflies Of Patagonia: A Phylogeographic Study Utilizing Epic, Taylor King, Seth Bybee

Journal of Undergraduate Research

While working on my original project, “In Situ Hybridization of Opsins in Odonata,” I encountered abundant setbacks that led to refocusing my efforts on a similar project. Patagonian Odonata is one of the most well known insect groups in South America. Within the order Odonata there are two main suborders, encompassing dragonflies and damselflies. It is composed of 36 species in 18 different genera, with 60% of the species and 40% of the genera endemic to the region. We selected two damselfly species, Rhionaeshna variegata and Cyanallagma interruptum to perform the first phylogeographic study of Patagonian Insects. They are the …

Regulation Of Mtorc1 By Homocysteine And Its Effects On Autophagy In Human And Mouse Neuronal Tissues, Khoosheh Khayati

Dissertations

The molecular mechanisms leading to and responsible for age-related, sporadic Alzheimer’s disease (AD) remain largely unknown. It is well documented that aging patients with elevated levels of the amino acid metabolite homocysteine (Hcy) are at high risk of developing AD. The impact of Hcy on molecular clearance pathways in mammalian cells, including in-vitro cultured induced pluripotent stem cell-derived forebrain neurons and in-vivo neurons in mouse brains is investigated in this research project. Exposure to high Hcy levels results in up-regulation of the mechanistic target of rapamycin complex 1 (mTORC1) activity, one of the major kinases in cells that is tightly …

Using A Bio-Inspired Model To Understand The Evolution Of The Remora Adhesive Disk, Kaelyn Mykel Gamel

Theses

Manmade adhesives often fail on wet, compliant surfaces, which can result in poor performance when attaching sensors in medical, defense, and research situations. However, a number of fishes have evolved adhesive discs that allow adhesion to surfaces under challenging wetted conditions. A remarkable evolutionary advancement is found in the family of echenidae, colloquially known as the remora. In particular, the remora fishes have the ability to attach to wet, compliant bodies under high shear conditions for extended periods of time. This research addresses the lack of underwater adhesives by using remora adhesion as a bioinspired model. Evolution has taken …