Biology Commons^™

Lack Of Host Specialization On Winter Annual Grasses In The Fungal Seed Bank Pathogen Pyrenophora Semeniperda, Julie Beckstead, Susan E. Meyer, Tony S. Ishizuka, Kelsey M. Mcevoy, Craig E. Coleman

Biology Faculty Scholarship

Generalist plant pathogens may have wide host ranges, but many exhibit varying degrees of host specialization, with multiple pathogen races that have narrower host ranges. These races are often genetically distinct, with each race causing highest disease incidence on its host of origin. We examined host specialization in the seed pathogen Pyrenophora semeniperda by reciprocally inoculating pathogen strains from Bromus tectorum and from four other winter annual grass weeds (Bromus diandrus, Bromus rubens, Bromus arvensis and Taeniatherum caput-medusae) onto dormant seeds of B. tectorum and each alternate host. We found that host species varied in …

Induction And Development Of Anther-Derived Gametic Embryos In Cucumber (Cucumis Sativus L.) By Optimizing The Macronutrient And Agar Concentrations In Culture Medium, Mohammad Reza Abdollahi, Samereh Najafi, Hasan Sarikhani, Sayyed Saeed Moosavi

Turkish Journal of Biology

Anther culture response of a cucumber cultivar (Beta Alpha) and three Iranian landraces of cucumber (Basmenj, Isfahani, and Korki) on MS culture media with an altered macronutrient strength (half, full, 1.5-fold, and double-strength) or various concentrations of agar (0, 3.5, 7, and 14 g L-1) was evaluated in two separate experiments. The effect of different concentrations of agar on the development of callus-derived embryos was also assessed. The androgenic potentials of various cucumbers were significantly (P < 0.01) influenced by the different macronutrient strengths and agar concentrations, although anther culture responses could vary according to the cucumber type. A doubled strength of macronutrients in culture medium resulted in the highest percentage of callogenesis (100%) in Isfahani cucumber, while use of full strength of macronutrients produced the highest percentage of embryogenic calli (83.33%) in the mentioned landrace compared to other tested forms. The maximum number of gametic embryos (1.26 and 1.23 embryos/anther) differentiated from Isfahani anther cultures on full- and half-strength MS medium, respectively. In the second experiment, the highest percentages of callogenesis were obtained in MS culture media solidified with 14 g L-1 and 7 g L-1 agar for Basmenj, with 3.5 g L-1 agar or liquid medium for Isfahani, with 7 g L-1 agar for Beta Alpha, and with 14 g L-1 agar for Korki. Culture media solidified with 7 g L-1 agar produced the highest percentage of embryogenic calli compared to other treatments. Anther culture of Korki cucumber on culture medium with 14 g L-1 agar produced the maximum number of embryos per anther compared to other cucumbers. Improved production of mature somatic embryos (torpedo and cotyledonary embryos) was achieved with higher agar concentrations (7 and 14 g L-1) for the cucumber cultivar and all landraces.

Androgenic Responses Of 64 Ornamental Pepper (Capsicum Annuum L.)Genotypes To Shed-Microspore Culture In The Autumn Season, Esi̇n Ari, Hi̇lal Bedi̇r, Selcen Yildirim, Tolga Yildirim

Turkish Journal of Biology

The recent gradual increase in interest and demand for multipurpose ornamental peppers has encouraged intensive breeding studies, especially for use in landscape. However, information in the literature about haploidy is limited. Thus, first, we intend to identify proper morphological markers for quick selection of suitable flower buds containing convenient microspores in two sample ornamental pepper genotypes with and without anthocyanin in external appearance. Secondly, the androgenic responses of 64 genotypes are determined in the autumn season through shed-microspore culture. Based on DAPI-assisted results, the calyx/bud ratio can be used as an effective morphological marker for proper bud selection in both …

Leech Host Specificity And Its Effect On Rates Of Parasitism In Two Pond Turtle Species, Sternotherus Odoratus And Chrysemys Picta, Linda Valentina Araya

Theses, Dissertations and Culminating Projects

Appropriate host selection by parasites is critical for ensuring offspring survival, optimal feeding location, and protection from predators. Leeches (Placobdella spp.) are known to parasitize bottom-dwelling turtle species more frequently than basking turtle species, but it is not known whether this bias is evolutionarily advantageous. I tested two potential factors that could influence host selection by leeches: differential chance of encounter due to habitat usage, and chemosensory bias of leeches toward bottom-dwelling species. I first confirmed that Chrysemys picta (Eastern painted turtle, a basking species) and Sternotherus odoratus (common musk turtle, a bottom-dwelling species) in Lake Wapalanne in Sussex County, …

Drifting Communities : Relationships Between Soil Chemistry, Plant And Microbial Communities Along An Urban Watershed, Carolyn Haines-Klaube

Theses, Dissertations and Culminating Projects

The goal of this study was to investigate plant and soil communities along a riparian corridor at four sites in the Toms River Watershed of Ocean County, NJ. This research assessed how these communities differ between the upland and floodplain habitats by examining both biotic and abiotic factors. To accomplish this, plant communities were assessed upon tree basal area, woody shrub cover, herbaceous cover and presence/absence of “all-vegetation”. Soil microbial community composition was also measured at the same four sites. At each of the four sites, I surveyed three transects that were parallel, perpendicular and upland from the river. These …

Biochar Amendment Of Grassland Soil May Promote Woody Encroachment By Eastern Red Cedar, Ramesh Laungani, Kenneth Elgersma, Maria Juarez, Kristin Mcelligott, Tyler Kuhfahl

Faculty Work

Although carbon (C) additions to soil have been used in restoration to combat invasive species through changes in soil nitrogen (N) availability, carbon amendments to soil derived from plant material can impact soil N availability in a species-specific manner. As such, amendment-driven feedbacks on N may impact invasive species success and woody encroachment. Soil amendments like biochar, which is often added to soil to increase C storage in grassland systems, may unintentionally encourage woody encroachment into these grasslands by changing soil N dynamics. Few studies have examined biochar impacts on non-agricultural species, particularly invasive species. Woody encroachment of Eastern Red …

Japanese Knotweed On The Shawangunk Kill : Land Use And The Effect On Success Of An Invasive Species In New York State, William Valleau

Legacy Theses & Dissertations (2009 - 2024)

Japanese knotweed is a highly invasive plant species that is established throughout the United States, including New York State. It is well established in the literature that this plant is spread easily in riparian areas via moving water. In this study, it was hypothesized that the different land use types adjacent to the stream banks would have an additional influence on the spread of the plant. Agricultural and residential land use types were examined as the most likely to demonstrate the land use influence. The area selected for this study was a portion of the Shawangunk Kill, a stream in …

The Gammaturc Nanomachine Mechanism And Future Applications, Timothy Riehlman

Legacy Theses & Dissertations (2009 - 2024)

The complexity and precision of the eukaryotic cell’s cytoskeletal network is unrivaled by any man-made systems, perfected by billions of years of evolution, mastering elegant processes of self-assembly, error correction, and self-repair. Understanding the capabilities of these networks will have important and far reaching applications in human medicine by aiding our understanding of developmental processes, cellular division, and disease mechanisms, and through biomimicry will provide insights for biosynthetic manufacturing at the nanoscale and across scales. My research utilizes cross species techniques from Human to the model organism of Fission Yeast to investigate the structure and mechanisms of the g-tubulin ring …

Use Of The Non-Radioactive Sunset Method To Detect Decreased Protein Synthesis In Proteasome Inhibited Arabidopsis Roots, Doug Van Hoewyk

Biology

Background: In eukaryotic cells, the proteasome maintains homeostasis by selectively degrading regulatory and misfolded proteins, and in doing so contributes to the amino acid pool. Inhibition of the proteasome in yeast and human cells decreases de novo protein synthesis. However, it is not know if proteasome inhibition in plants similarly suppresses protein synthesis. To address this gap in plant biology, protein synthesis in Arabidopsis roots was estimated using SUface SEnsing of Translation (SUnSET) techniques. This non-radioactive method has been validated in animal cells, but has not yet been applied to plants. The goal of this study was to investigate the …

Anatomical And Ultrastructural Responses Of Brassica Napus After Long-Term Exposure To Excess Zinc, Seyed Mousa Mousavi Kouhi, Mehrdad Lahouti, Ali Ganjeali, Mohammad Hassan Entezari

Turkish Journal of Biology

Heavy metal contamination resulting from anthropogenic activities is one of the major environmental problems in the modern world. Progress toward creating modified plants that are more efficient in phytoremediation requires an understanding of the anatomical and ultrastructural changes involved in heavy metal accumulation. A large supply of zinc (Zn) is toxic for plants and can lead to functional and structural disorders. The present study investigates the anatomical and ultrastructural responses of Brassica napus (rapeseed) to excess Zn after long-term exposure. Results showed that Zn bioaccumulation in the roots and leaves of plants treated with 350 μM Zn2+ was severely increased, …

Pluripotent Stem Cells And Their Use In Hearing Loss, Ahmet Hamdi̇ Kepekçi̇, Okan Özgür Özturan, Mustafa Yavuz Köker

Turkish Journal of Biology

Throughout its half a century of development, stem cell research has included two main fields: embryonic stem (ES) cell research and the reprogramming of body somatic cells. In the present review we focused on stem cell reprogramming and its relation with otolaryngology. The human body somatic cells are transformed into pluripotent cells by three basic methods: the somatic nuclear transfer method, the somatic cell fusion method (getting cellular pluripotent capacity in cellular reprogramming), and by transcription factors influencing the body somatic cells to generate reprogrammed induced pluripotent stem (iPS) cells. ES cells and iPS cells have pluripotency and differentiate into …

Comparison Of Enzymatic And Nonenzymatic Isolation Methods For Endometrial Stem Cells, Polen Koçak, Serli̇ Cani̇kyan, Meli̇ke Batukan, Rukset Attar, Fi̇kretti̇n Şahi̇n, Di̇lek Telci̇

Turkish Journal of Biology

Human endometrial stem cells (hESCs) are mesenchymal stem cells, which are responsible for the monthly renewal of the basal layer of the human endometrium by facilitating stromal and vascular regeneration. In this study, hESCs were isolated by using three different isolation methods including nonenzymatic and enzymatic digestion with trypsin and collagenase type 1. To determine the efficiency of these three methods, cells were characterized using a cell proliferation assay and mesenchymal and hematopoietic stem cell markers. Our results demonstrate that although the nonenzymatic isolation method gave rise to hESCs that had a higher proliferative rate, the mesenchymal stem cell profiles …

Ultra-Thin Microfluidic Devices Built Via Thermal Lamination, Fernando Ontiveros, J Ryan Mcdowell

Biology Faculty/Staff Publications

Widespread adoption of lab-on-a-chip technologies may be encouraged by the development of methods and devices that require minimal investment and expertise. Here we describe a type of device that makes exclusive use of consumer-grade components and equipment. The devices consist of as little as three layers of a polymer film, with microchannels shaped by an inexpensive craft cutter, and sealed by thermal lamination. Fabrication time is in the order of minutes, and the method does not require any prior training. To showcase the properties and demonstrate the versatility of the devices, we describe their use to generate fully biocompatible lipid-based …

Aryl Hydrocarbon Receptor Activation By Tcdd Modulates Expression Of Extracellular Matrix Remodeling Genes During Experimental Liver Fibrosis, Cheri L. Lamb, Giovan Cholico, Daniel E. Perkins, Michael T. Fewkes, Julia T. Oxford, Trevor J. Lujan, Erica E. Morrill, Kristen A. Mitchell

Biology Faculty Publications and Presentations

The aryl hydrocarbon receptor (AhR) is a soluble, ligand-activated transcription factor that mediates the toxicity of 2,3,7,8- tetrachlorodibenzo-p-dioxin (TCDD). Increasing evidence implicates the AhR in regulating extracellular matrix (ECM) homeostasis. We recently reported that TCDD increased necroinflammation and myofibroblast activation during liver injury elicited by carbon tetrachloride (CCl₄).However, TCDD did not increase collagen deposition or exacerbate fibrosis in CCl₄-treated mice, which raises the possibility that TCDD may enhance ECM turnover. The goal of this study was to determine how TCDD impacts ECM remodeling gene expression in the liver. Male C57BL/6 mice were treated for …

Loblolly Pine Genetics Structure Its Mycorrhizal Community, Bridget Joan Piculell

Electronic Theses and Dissertations

Plant populations are constantly exposed to a multitude of biotic and abiotic environmental selection pressures. The ability of a population to persist in or adapt to its environment is heavily influenced by the genetic underpinnings of the traits involved. Thus, in order to understand patterns in current plant populations, and to predict future populations dynamics, an understanding of the genetic basis of adaptive traits is necessary. For example, genetic correlations between traits (driven by pleiotropy or linkage disequilibrium) could influence how species evolve under multiple, conflicting selection pressures, potentially either constraining or enhancing the adaptation of species to each other. …

Influence Of Plant Species, Location, And Seasonality On Rhizosphere Bacterial Communities In Freshwater Wetlands, Hakchul Lee

Electronic Theses and Dissertations

Plant-associated microbes influence plant functions, including development and growth and abiotic stress tolerance. Rhizosphere microbial communities have been shown to vary according to differences in wetland vegetation. Owing to the complexity of factors influencing soil microbial community structure, a greater knowledge of the relationship between rhizosphere microbial communities and different types of plant species will lead to a deeper understanding of plant-microbe interactions in wetlands. Thus, the purpose of my research was to determine the influence of plant species on rhizosphere microbial communities from different freshwater wetlands. The spatial variability, associated with different wetland sites, of rhizosphere microbial communities was …

Biochemical Composition Of Caribbean Gorgonian Corals And Their Symbiosis Under Ambeint And Stressful Conditions, Kartick Prakash Shirur

Electronic Theses and Dissertations

Gorgonian corals are the dominant benthic fauna on Caribbean reefs. Unlike scleractinian corals, gorgonian abundance on these reefs has remained stable or has increased. Therefore, to predict how climate change will affect the reef community, it is essential to understand gorgonian physiology under ambient and stressful situations. Under ambient conditions, eight gorgonian species hosted different clade B Symbiodinium, and in two gorgonian species in which the bacterial microbiomes were investigated, two distinct communities were found. In the eight gorgonian species, skeletal content varied from 75-96%, with those having more tissue also having more Symbiodinium density within their branches. The composition …

The Role Of Nuclear Factor-Erythroid-2-Related Factor 2 In Sensitivity To Thymidylate Synthase Inhibitors In Colon Cancer Cells, Sarah Ashley Clinton

Theses and Dissertations

Nuclear factor-erythroid-2-related factor 2 (NRF2), a member of the cap ‘n’ collar family of bZIP transcription factors, confers protection against oxidative and electrophilic stress. NRF2 is of great interest in cancer research, due to its role in response to chemotherapy. The class of drugs targeting thymidylate synthase (TYMS) has been useful in the treatment of colorectal cancer, among other cancers. It has long been known that inhibition of TYMS leads to depletion of thymidine levels and the onset of programmed cell death, deriving from the enzyme’s function as the sole de novo source of thymidine for DNA replication and repair. …

Introgression Lines Obtained From The Cross Between Triticum Aestivumand Triticum Turgidum (Durum Wheat) As A Source Of Leaf And Stripe (Yellow)Rust Resistance Genes, Naimat Ullah, Muhammad Asif, Hussain Badshah, Tasmia Bashir, Abdul Samad Mumtaz

Turkish Journal of Biology

Introgression lines (ILs) were produced from crosses of common hexaploid bread wheat (Triticum aestivum L.) (AABBDD) cultivars with tetraploid durum wheat (Triticum turgidum) (AABB). These ILs were checked against diversity of crop-damaging fungal diseases and especially for leaf and stripe rusts, proved to be the most damaging biotic enemies in the world and especially in South Asia and the southern region of Pakistan. Microsatellite markers (STRs) were used to determine the frequency of translocations found on different chromosomes during the localization of durum wheat (Triticum turgidum). Two independent loci for stripe and leaf rust resistance were found on 2B and …

Effect Of The Ethylene Inhibitors Silver Nitrate, Silver Sulfate, And Cobalt Chloride On Micropropagation And Biochemical Parameters In The Cherryrootstocks Cab-6p And Gisela 6, Virginia Sarropoulou, Kortessa Dimassi-Theriou, Ioannis Therios

Turkish Journal of Biology

In the present study, the effects of three ethylene inhibitors, silver nitrate (AgNO3), silver sulfate (Ag2SO4), and cobalt chloride (CoCl2), on the morphogenic and biochemical responses in CAB-6P and Gisela 6 cherry rootstocks were investigated. In both rootstocks, AgNO3 and Ag2SO4 promoted shoot regeneration while CoCl2 had such an effect only in Gisela 6. The rooting percentage of CAB-6P and Gisela 6 explants was diminished with AgNO3, Ag2SO4, and CoCl2. AgNO3 increased root number (40 μM) and root length (50 μM) in the CAB-6P rootstock while it had an inhibitory effect in Gisela 6. Ag2SO4 and CoCl2 enhanced root length …

Development Of A Dreissena Bioassay To Assess The Toxicity Of Contaminants Across Two Life-History Stages, Caroline Joyce Addis

Wayne State University Theses

Dreissenid mussels (Dreissena polymorpha and D. bugensis) have rapidly become widespread and ubiquitous in North America since their introduction into the Great Lakes in the 1980s. The resulting environmental and economic impacts of their invasion have been extensive, negatively affecting biodiversity and costing millions of dollars in control efforts and damage to power generation and water treatment facilities. Although dreissenids are often associated with negative impacts, they may present a practical tool for toxicology studies. The typically sessile behavior of the benthic adults coupled with the planktonic nature of the veligers allow for a more complete evaluation of water quality …

Functional Characterization Of The Novel Prdm Gene Apox In Tribolium Castaneum, Xin Wang

Wayne State University Theses

Previous work revealed that embryonic and post-embryonic knockdown (KD) of Tribolium Prdm gene Apoptix (Apox) leads to phenotypes, such as melanotic spots in external tissue of larval and pupal body. One part of my research is screening for Apox-specific phenotypes by RNA interference with a second Apox dsRNA. My results revealed that Apox is essential for the embryonic and post-embryonic survival and plays an important role in the regulation of embryonic and post-embryonic development in Tribolium, such as bristle formation. In addition, previous work showed that phenotypes of Apox KD Tribolium were significantly rescued by combinatorial knockdown of Apox and …

Probing The Functional Relevance Of Reactive Hippocampal Neurogenesis In A Model Of An Alcohol Use Disorder, Chelsea Rhea Geil Nickell

Theses and Dissertations--Pharmacy

Alcoholism, or alcohol use disorders (AUDs), represent a major public health concern both locally and globally. Critically, excessive alcohol consumption results in neurodegeneration in brain regions such as the hippocampus which is known for its role in learning and memory. Recovery of hippocampal volume loss has been observed after prolonged abstinence, but the mechanisms underlying this process are not well understood. Adult neurogenesis is thought to contribute to this recovery since after alcohol exposure a reactive increase in adult neurogenesis is observed. This reactive neurogenesis (the process by which brain insult results in a compensatory increase in neurogenesis) may represent …

3: "The Current Extinction: Defaunation & Ecosystem Disruption", Sarah O'Leary-Driscoll, Crystal Randall

Ecosystem Disruption & Climate Change

Information taken from: Dirzo, R. et al (2014). Defaunation in the Anthropocene. Science, 345(401).

Scientists estimate, conservatively, that there are 5 to 9 million different animal species on the planet. But that number is continually changing, and unfortunately, dropping, as we are likely losing 11,000- 58,000 species annually, and evidence suggests that on average, there has been a decline of about 28% in terms of numbers of individuals within a species over the last four decades. Both of these statistics are vitally important. The critical nature of the first is perhaps more obvious, as total loss of a species is …

2a: "Illinois Carbon Dioxide Emissions Activity", Sarah O'Leary-Driscoll, Crystal Randall

Ecosystem Disruption & Climate Change

Your goal for this activity is to compare the different sources of carbon dioxide emissions, stemming from the consumption of fossil fuels, in Illinois. To do this you will be working with data spanning from 1980 to 2012.

The Greenhouse Effect: Does The Concentration Of Carbon Dioxide Affect The Air Temperature In A Closed Environment?, Climate Science Investigations - Nasa

Ecosystem Disruption & Climate Change

The purpose of this lesson is to investigate the effect of carbon dioxide (CO2) concentration on air temperature in a closed environment.

Human Anatomy And Physiology Preparatory Course: Part 3 Of 4 (Interactive), Carlos Liachovitzky

Open Educational Resources

he overall purpose of these preparatory course set of learning objectives is to help students familiarize with some terms and some basic concepts they will find later in the Human Anatomy and Physiology I course.

These 40+ learning objectives to prepare for Human Anatomy and Physiology can be downloaded and played in a desktop, or laptop (windows exe file).

The entire course has four parts:

• Part 1
• Part 2
• Part 3
• Part 4

Each learning objective is followed by a set of multiple choice question similar to those found later in a Human Anatomy and Physiology course.

Screening For Pathogenic Escherichia Coli In The Chattahoochee River, Columbus, Georgia, Micah A. Staples

Theses and Dissertations

Escherichia coli testing is frequently used to indicate the possible presence of harmful pathogens, but E. coli itself can be pathogenic. Serotype 0157:H7, enterohemorrhagic E. coli, is likely the most medically important pathogenic strain of E. coli in the United States. In this study, we surveyed for 0157:H7 and three strains of another pathogenic subtype: enterotoxigenic E. coli. We isolated E. coli colonies from samples taken from the Chattahoochee River in Columbus, Georgia at two different locations, above and below wastewater outputs. We used PCR to test for the individual subtypes and then used a nested PCR protocol …

The Loss Of Methanol Utilization In Methylobacteria, Justin T. Skariah

Theses and Dissertations

Methylobacteria primary uses Cl substrates as a carbon and energy source. This experiment was performed to see if Methylobacteria would lose the ability to use Cl compound methanol after prolonged exposure to multi-carbon substrates. To determine this, the bacteria was grown on MR2A3 (multi-carbon substrates) and MOM (single-carbon substrates) for multiple generations and tested for loss of function on a series of generations. These tests include streaking plates of MOM and R2A with bacteria from MR2A3 then getting a bacterial colony count and also toothpick transfers of the colonies to verify findings. After 20 generations there were no significant decrease …

Novel Cell Penetrating Peptide-Adaptors Effect Intracellular Delivery And Endosomal Escape Of Protein Cargos, John C. Salerno, Verra M. Ngwa, Scott J. Nowak, Carol A. Chrestensen, Allison N. Healey, Jonathan L. Mcmurry

Faculty Articles

The use of cell penetrating peptides (CPPs) as biomolecular delivery vehicles holds great promise for therapeutic and other applications, but development has been stymied by poor delivery and lack of endosomal escape. We have developed a CPP-adaptor system capable of efficient intracellular delivery and endosomal escape of user-defined protein cargos. The cell penetrating sequence of HIV transactivator of transcription was fused to calmodulin, which binds with subnanomolar affinity to proteins containing a calmodulin binding site. Our strategy has tremendous advantage over prior CPP technologies because it utilizes high affinity noncovalent, but reversible coupling between CPP and cargo. Three different cargo …