Biology Commons^™

Latitudinal Variation In Thermal Tolerance And Preference Of Fundulus Notatus And F. Olivaceus: Implications For Temperature Mediated Reproductive Isolation, Laura Kristin Stewart

Master's Theses

Temperature is one of the most pervasive and influential abiotic factors affecting the life histories of fish, regulating a host of physiological processes and influencing behavioral thermoregulation. Fundulus notatus, the blackstripe topminnow, and F. olivaceus, the blackspotted topminnow, are widely distributed species located in drainages along the northern part of Gulf of Mexico (30°N latitude) and as far north as southern Illinois (39°N latitude). However, F. notatus has a much broader range reaching up into the Great Lakes (43°N latitude). Due to their broad geographical range, these populations inhabit a wide range of thermal regimes, thus …

Naturalists’ Perspectives On The Use Of Mobile Technology During A Nature Hike, Aubin Marishka Radzewicz St. Clair

Master's Theses

Naturalists act as our link between scientific knowledge and the public’s understanding of natural history and conservation efforts. In order for them to succeed, they need access to reference materials as well as up-to-date information (Mankin, Warner, & Anderson, 1999). Incorporating mobile technology (i.e. tablets) into naturalists’ endeavors in natural history and environmental education can be used as supportive and educational tools. My project investigated how newly trained naturalists used tablet technology while leading groups of children on nature hikes. I investigated naturalists’ views on the use of mobile technology as a tool during the hikes. My research was guided …

Elucidating The Molecular Function Of Reprolysin Metalloproteases In Tick-Host-Pathogen Interaction, Jaclyn Bo Williams

Master's Theses

Ticks are ectoparasites that attach to their host for many days to weeks, feeding to engorgement and continuing their species life cycle. The mechanisms behind the successful feeding and manipulation of host immune responses have been associated with the secretion of their specialized saliva. Tick saliva includes a variety of modulatory molecules that must disrupt and counteract defense mechanisms, including a variety of proteases. Reprolysin Metalloproteases, in the Zn²⁺ dependent family, is secreted as a proenzyme and is shown to have proteolytic activity, degrading fibrinogen and gelatinase activity, as well as disturbing homeostasis¹². Previous work with …

Community-Acquired Methicillin-Resistant Staphylococcus Aureus (Ca-Mrsa) Usa300 Perturbs Acquisition Of Lysosomal Hydrolases And Requires Phagosomal Acidification For Survival In A Human Macrophage Cell Line, Zachary Ronald Tranchemontagne

All Theses And Dissertations

Community-acquired Methicillin-resistant Staphylococcus aureus (CA-MRSA) strain USA300 is a major cause of invasive drug-resistant skin and soft tissue infections in humans. Although S. aureus is a well-recognized extracellular pathogen, recent reports that USA300 survives inside host macrophages suggest that the intramacrophage environment may be a niche for persistent infection. Intramacrophage survival requires bacteria to avoid destruction in the phagosome; however, mechanisms by which USA300 evades phagosomal defenses are unclear. We examined the fate of the USA300-containing phagosome in human THP-1 macrophages by evaluating phagosomal acidification and maturation, and by testing the impact of phagosomal conditions on bacterial viability. Utilizing confocal …

A Search For Parent-Of-Origin Effects On Honey Bee Gene Expression, Sarah D. Kocher, Jennifer M. Tsuruda, Joshua D. Gibson, Christine M. Emore, Miguel E. Arechavaleta-Velasco, David C. Queller, Joan E. Strassmann, Christina M. Grozinger, Michael R. Gribskov, Phillip San Miguel, Rick Westerman, Greg J. Hunt

Biology Faculty Research

Parent-specific gene expression (PSGE) is little known outside of mammals and plants. PSGE occurs when the expression level of a gene depends on whether an allele was inherited from the mother or the father. Kin selection theory predicts that there should be extensive PSGE in social insects because social insect parents can gain inclusive fitness benefits by silencing parental alleles in female offspring. We searched for evidence of PSGE in honey bees using transcriptomes from reciprocal crosses between European and Africanized strains. We found 46 transcripts with significant parent-of-origin effects on gene expression, many of which overexpressed the maternal allele. …

Evaluation And Application Of Population Size Estimators To Assess Brook Trout (Salvelinus Fontinalis) Response To A Non-Native Salmonid Removal In A Small Michigan Coldwater Stream, Joseph P. Gerbyshak

All NMU Master's Theses

Non-native salmonids have been stocked into the Great Lakes since the 1870s and now naturalized populations use tributary environments to reproduce and for their juvenile life stage. Historically, brook trout were the only salmonid to inhabit the tributary environment and numerous studies suggest that exotic salmonids negatively affect brook trout by competing for limited resources. Other studies have been successful at removing non-native salmonids and the native populations increased. During this project 5,320 exotic salmonids were removed from a tributary of Lake Superior from 2008 to 2010 significantly reducing their density and young-of-year brook trout density increased by 260% the …

Long-Term Shifts In The Phenology Of Rare And Endemic Rocky Mountain Plants, Seth M. Munson, Anna A. Sher

Biological Sciences: Faculty Scholarship

Premise of the study: Mountainous regions support high plant productivity, diversity, and endemism, yet are highly vulnerable to climate change. Historical records and model predictions show increasing temperatures across high elevation regions including the Southern Rocky Mountains, which can have a strong influence on the performance and distribution of montane plant species. Rare plant species can be particularly vulnerable to climate change because of their limited abundance and distribution.

• Methods: We tracked the phenology of rare and endemic species, which are identified as imperiled, across three different habitat types with herbarium records to determine if flowering time has changed …

The Effects Of Triiodothyronine, Glucose, Alanine, And Iodide As Nutrients On The Survival And Successful Metamorphosis Of Aeolidiella Stephanieae Veligers, Bryan Tate

All Theses And Dissertations

During early life stages, nutrients are crucial to the proper development of larval marine invertebrates. Many such larvae are lecithotrophic and therefore do not actively feed; however, a large body of research has shown that lecithotrophic larvae take in dissolved organic material (DOM) including amino acids and sugars, contributing heavily to metabolic requirements. Another dissolved nutrient, iodine, is useful to marine invertebrates for the production of organic compounds. Some of these compounds (thyroid hormones, THs) are historically thought to be used almost exclusively by vertebrates, though studies have shown that THs are also useful to some marine invertebrates for developmental …

Gating Mechanisms Of The Canonical Trp Channel Isoform Trpc4, Dhananjay P. Thakur

Dissertations and Theses (Open Access)

Non-selective cation channels formed by Transient Receptor Potential Canonical (TRPC) proteins play important roles in regulatory and pathophysiological processes. These channels are known to be activated downstream from phospholipase C (PLC) signaling. However, the mechanism by which the PLC pathway activates TRPC4/C5 remains unclear. Uniquely, TRPC4 is maximally activated only when two separate G protein pathways, G_q/11 and G_i/o, are co-stimulated, making it a coincidence detector of G_q/11- and G_i/o -coupled receptor activation. Using HEK293 cells co-expressing mouse TRPC4β and selected G protein-coupled receptors, I observed that coincident stimulation of G_i/o proteins and …

Investigating The Interaction Of Aurka And Ube2c In Colorectal Cancer Cells, Apurva M. Hegde

Dissertations and Theses (Open Access)

Colorectal cancer (CRC) is the third leading cause of cancer-related deaths in the US. Among the many genomic aberrations previously implicated in colorectal cancer, recurrent amplification of chromosome 20q is frequently associated with liver metastasis. Previous research in our lab identified a gene signature on chromosome 20q associated with colorectal cancer progression. In this study, one of the genes in the signature, the ubiquitin conjugating enzyme UBE2C, was identified through preliminary bioinformatics analysis as a candidate for further examination of its role in CRC progression. Co-expression analysis of UBE2C in tumor-normal datasets from the public database Oncomine revealed all the …

Metabolic Profiles Of Household Pseudomonas Species Groups., Ogochukwu S. Onyiri

Electronic Theses and Dissertations

Resources influence the distribution, behavior, growth and reproduction of bacterial species. Understanding how closely related species utilize resources will shed light on the ecological traits or principles that shape biogeographic patterns and promote coexistence of species. Twelve Pseudomonas strains isolated from a single human home and PA01, the standard laboratory strain were evaluated in Luria Bertani media to understand whether their growth traits are influenced by their species group and/or their environment of isolation. Total growth, growth rate, early cumulative area under the growth curve (CUC) over 48 hours and viability (viable bacteria count per ml) at 24 and 48 …

Effects Of Different Agricultural Management Systems On Arbuscular Mycorrhizal Fungal Diversity, Community Structure, And Ecosystem Services., Charles Bradford Gottshall

Electronic Theses and Dissertations

Disturbances associated with row-crop agricultural management systems include mechanical (tillage and cultivation) and chemical (fertilizer, pesticides, herbicides, fungicides) inputs and are often co-occurring. Many soil microbes are sensitive to these disturbances, including arbuscular mycorrhizal fungi (AMF), important plant mutualists in agricultural systems. AMF associate with many crop plants and provide direct benefits through root pathogen protection, drought resistance, nutrient acquisition and uptake, as well as contribute to ecosystem services by improving overall soil fertility. Examining how different row-crop management system disturbances affect the AMF community is important for understanding and enhancing benefits provided by these important mutualists, and key to …

Into The Light: Diurnality Has Evolved Multiple Times In Geckos, Tony Gamble, E. Greenbaum, Todd R. Jackman, Aaron M. Bauer

Biological Sciences Faculty Research and Publications

Geckos are the only major lizard group consisting mostly of nocturnal species. Nocturnality is presumed to have evolved early in gecko evolution and geckos possess numerous adaptations to functioning in low light and at low temperatures. However, not all gecko species are nocturnal and most diurnal geckos have their own distinct adaptations to living in warmer, sunlit environments. We reconstructed the evolution of gecko activity patterns using a newly generated time-calibrated phylogeny. Our results provide the first phylogenetic analysis of temporal activity patterns in geckos and confirm an ancient origin of nocturnality at the root of the gecko tree. We …

Infection Rates And Distribution Of Trypanosoma Cruzi In Triatomine Insects From Several Public Parks Of Starr, Hidalgo And Cameron Counties, Carlos Guzman Jr.

Theses and Dissertations - UTB/UTPA

Chagas disease is caused by the protozoan Trypanosoma cruzi and is a major public health concern in many areas of the world, including the United States. The disease is transmitted by insect vectors known as kissing bugs from the subfamily Triatominae. While the majority of studies focus on domestic and peri-domestic collections, this study collected insect vectors from state parks in the Lower Rio Grande Valley. PCR analysis was done to obtain infection rates for collected insects, and a morphological examination was done to check insects for gender. In total 18 insects were captured with 12 of the captured insects …

Ecosystem Services Of Urban Trees And The Impacts Of Urbanization, Jorge E. Cantu

Theses and Dissertations - UTB/UTPA

The University of Texas- Pan American has conducted a complete survey of campus trees in partial fulfillment of the requirements for membership in the International Society of Arboriculture Designation of Tree Campus USA. This tree inventory was accomplished with the help of students whom were trained by faculty and foresters. Other than the completion of the tree inventory, this thesis had two main goals; 1) valuate the ecosystem services provided by campus trees 2) create a unique service learning project that other institutions can model. According to our calculations, the trees on campus have sequestered 568,652 kg of CO2, avoided …

Loss Of Mitochondrial Dna Causes Decreased Cell Viability, Alan M. Herrera

Theses and Dissertations - UTB/UTPA

Mitochondria are an organellar network involved in cellular bioenergetics and apoptosis, and dynamically balance their organization between fusion and fission events. Mitochondrial DNA (mtDNA) and nuclear DNA combine to encode polypeptides for the complexes of oxidative phosphorylation (OXPHOS) in the mitochondrial inner membrane, which generate a transmembrane potential (ΔΨm) to synthesize ATP. Loss of ΔΨm causes mitochondrial fission, which appears to be associated with the progression of apoptosis, a critical cell death mechanism that allows tissue homeostasis, developmental sculpturing, and the removal of unwanted cells. Using cultured human cell models of decreased ΔΨm (both genetic mtDNA-depleted ρ 0 and pharmacological …

The Roles Of Human Cytomegalovirus Us27 Gene Product During Virus Infection, Carolyn C. Tu

Master's Theses

Human cytomegalovirus (HCMV) is a widespread pathogen that causes lifelong latent infection. Successful persistence of HCMV in healthy individuals involves extensive manipulation of host cellular functions and immune responses. HCMV encodes four genes for putative G protein-coupled receptors (GPCRs): US27, US28, UL33, and UL78. The US28 gene product is a functional chemokine receptor that exhibits a variety of signaling outcomes. In contrast, the US27 gene product is an orphan with no known chemokine ligands. We have found that US27 triggers several biological effects: increased cellular proliferation, changes in gene expression, and enhanced signaling of cellular chemokine receptor CXCR4. Enhanced cell …

Evidence For The Persistence Of Food Web Structure After Amphibian Extirpation In A Neotropical Stream, Thomas R. Barnum, John M. Drake, Jose Checo Colón-Gaud, Amanda T. Rugenski, Therese C. Frauendorf, Scott Connelly, Susan S. Kilham, Matt R. Whiles, Karen R. Lips, Catherine M. Pringle

Biology: Faculty Publications

Species losses are predicted to simplify food web structure, and disease‐driven amphibian declines in Central America offer an opportunity to test this prediction. Assessment of insect community composition, combined with gut content analyses, was used to generate periphyton–insect food webs for a Panamanian stream, both pre‐ and post‐amphibian decline. We then used network analysis to assess the effects of amphibian declines on food web structure. Although 48% of consumer taxa, including many insect taxa, were lost between pre‐ and post‐amphibian decline sampling dates, connectance declined by less than 3%. We then quantified the resilience of food web structure by calculating …

Paenibacillus Larvae Spore Germination And American Foulbrood Disease Development In Honey Bee Larvae, Israel Alvarado

UNLV Theses, Dissertations, Professional Papers, and Capstones

Honey bee (Apis mellifera) pollination plays an important role in meeting our agricultural needs, yet we are incapable of completely preventing a decline in bee health, partially due to bacterial diseases. American Foulbrood (AFB), a bacterial disease of honey bee larvae, is particularly troublesome because the infectious agent is the bacterial spore of Paenibacillus larvae. Bacterial spores are resistant to extreme temperatures, unaffected by antibiotics, withstand exposure to disinfectants, and can remain dormant for years until they can revert back to vegetative cells.

Our research investigated P. larvae spore germination at the functional and pathogen-host level. We have found that …

Cultivation-Dependent Analysis Of Microorganisms Associated With Various Hydraulic Fracturing Fluids, Anthony Harrington

UNLV Theses, Dissertations, Professional Papers, and Capstones

The overarching goal of this study is to gain more insight to the microbial interactions associated with hydraulic fracturing by studying the culturable microorganisms present in various types of hydraulic fracturing fluids. Extraction of natural gas and other unconventional resources using hydraulic fracturing has increased in the last decade and very few studies have been conducted on the microorganisms associated with the various water types used in the process. From the very few published studies, the only cultivation-dependent method used involved determining the most probable number (MPN) of various metabolic groups, however the researchers failed to ask more in-depth questions …

Analysis Of Variables Related To Corridor Use By Ocelots And Bobcats In South Texas, Sarah E. Nordlof

Theses and Dissertations - UTB/UTPA

Biologists estimate that less than 50 endangered ocelots (Leopardus pardalis) remain in the United States, restricted to two small populations in Cameron and Willacy Counties located in deep south Texas. Conversely, bobcats (Lynx rufus) are abundant in south Texas; however, two of the biggest threats to both species are vehicle collisions and habitat fragmentation. To mitigate these threats, the installation of wildlife crossings has been proposed to decrease the number of road mortalities, and wildlife corridors have been suggested as a useful tool for providing increased habitat connectivity. However, research on ocelot use of corridors and wildlife crossings in Texas …

Exploration Of Nickel Tolerance And Hyperaccumulation In Arabidopsis Thaliana Transformed With Streptanthus Polygaloides Metal Tolerance Protein 1 (Spmtp1) Cdna, Madeleine K. Sano

Theses and Dissertations - UTB/UTPA

This study evaluated the role of hyperaccumulator S. polygaloides Metal Tolerance Protein 1 (SpMTP1) in conferring Ni tolerance and accumulation in the non-accumulator Arabidopsis thaliana. Analysis for Ni content in transgenic Arabidopsis transformed with SpMTP1, following a 12-day treatment of 100 µM Ni, showed a significant increase in Ni concentration in comparison to the wild-type Arabidopsis and empty vector transformed plants. Exposure of transgenic Arabidopsis to nickel also resulted in a coordinated increase of antioxidant enzyme (superoxide dismutase, glutathione reductase, and catalase) activities in the transgenic Arabidopsis, suggesting that increased activities of these oxidative stress response (OSR) proteins may be …

Characterization Of Oxidative Stress Response Proteins In Metal-Tolerant And Metal-Sensitive Brassicaceae Plant Species, Luis M. De Santiago

Theses and Dissertations - UTB/UTPA

In this study the expression of oxidative stress response (OSR) proteins in nonaccumulator and hyperaccumulator plant species of the Brassicaceae family were characterized. Oxidative stress was induced via nickel treatment and proteins were characterized through western blotting and image analysis. Statistical analysis indicated that the nonaccumulator species Arabidopsis thaliana significantly decreased catalase (CAT), glutathione reductase (GR), copper/zinc-dependent superoxide dismutase (Cu/ZnSOD), iron-dependent SOD (FeSOD), manganese-dependent SOD (MnSOD) and metal tolerance protein 1 (MPT1) expression in response to Ni-treatment. The hyperaccumulator species Thlaspi montanum variety montanum displayed either no significant change or a significant increase in OSR regulation following Ni-treatment with the …

Kaposi’S Sarcoma-Associated Herpesvirus Transmission And Infection Among Young Zambian Children, Landon N. Olp

School of Biological Sciences: Dissertations, Theses, and Student Research

Kaposi’s sarcoma-associated herpesvirus (KSHV) is the etiologic agent for all forms of Kaposi’s sarcoma (KS)—one of the most common pediatric cancers in sub-Saharan Africa during the AIDS epidemic. KS was endemic in sub-Saharan Africa prior to the HIV/AIDS epidemic, but KS cases drastically increased thereafter. Our laboratory previously observed that KSHV infection is common among Zambian children and saliva is the major route of transmission. However, additional factors associated with the transmission of KSHV to children are poorly understood. Since a vaccine against KSHV is not currently available, it is paramount to understand factors associated with transmission so that alternative …

Estimating Tiger (Panthera Tigris) Prey Density Using Camera Traps And Fecal Accumulation Rates, Jenifer Bunty

All Theses

The conservation of tiger populations requires the preservation of their prey. Assessing prey populations is therefore important, but challenges arise due to the elusive nature of many prey species. We used two indirect methods to estimate the density of sika deer (Cervus nippon), an elusive tiger prey species, in the Sikhote-Alin Biosphere Reserve in the Russian Far East. The fecal accumulation rate (FAR) is widely used and provides estimates of ungulate density based on the accumulation of fecal pellet groups in previously cleared plots. More recently, the random encounter model (REM) was developed to estimate population density from …

Tradeoffs Of Warm Adaptation In Aquatic Ectotherms : Live Fast, Die Young?, A. Porreca, E. Martinez, R. Colombo, Michael Menze

Faculty and Staff Scholarship

In the face of a changing climate, questions regarding sub-lethal effects of elevated habitat temperature on the physiology of ectotherms remain unanswered. In particular, long-term responses of ectotherms to the warming trend in tropical regions are unknown and significantly understudied due primarily to the difficulties in specimen and community traceability. In freshwater lakes employed as cooling reservoirs for power plants, increased physiological stress from high water temperature can lead to an increase in mortality, reduce growth, and potentially alter the community structure of fishes. Throughout this study, we employ this highly tractable system to assess how elevated thermal regimes can …

Physiological Performance Of Warm-Adapted Marine Ectotherms : Thermal Limits Of Mitochondrial Energy Transduction Efficiency., Eloy Martinez, Eric Hendricks, Michael Menze, Joseph Torres

Faculty and Staff Scholarship

Thermal regimes in aquatic systems have profound implications for the physiology of ectotherms. In particular, the effect of elevated temperatures on mitochondrial energy transduction (i.e. energy from carbon substrates to ATP) in tropical and subtropical teleosts may have profound consequences on organismal performance and population viability. Upper and lower whole-organism critical temperatures for teleosts suggest that subtropical and tropical species are not susceptible to the warming trends associated with climate change, but sub-lethal effects on energy transduction efficiency and population dynamics remain unclear. The goal of the present study was to compare the thermal sensitivity of processes associated with mitochondrial …

The Dynamics Of Human And Rattlesnake Conflict In Southern California, Aaron Grant Corbit

Loma Linda University Electronic Theses, Dissertations & Projects

Human-rattlesnake conflict occurs when rattlesnakes are discovered in human-dominated areas and are deemed to pose an unacceptable risk to humans because of their venomous bite. In this dissertation, I investigated the nature of this conflict from the perspectives of both the behavioral and survival risks posed to rattlesnakes and the medical risks posed to humans. In the first of three studies, I investigated the effects of short- and long-distance translocation (SDT and LDT) of nuisance wildlife as a way of mitigating conflict between humans and naturally occurring Red Diamond Rattlesnakes (Crotalus ruber) near residential development in southern California. Snake activity …

Traditional Medicinal Uses Of Small Mammal Products: A Case Study Of The African Savannah Hares, Crested Porcupines And Rock Hyraxes In Serengeti District, Tanzania, Flora John Magige

Tanzania Journal of Science

Traditional medicines, both plant and animal products, have been used to cure various diseases since time immemorial especially in rural areas worldwide. Many studies have focused on traditional plant products, but little research has been conducted on animal traditional medicines. This study investigated  the use of small mammal  products for medicinal purposes in three villages bordering Serengeti National Park in Serengeti District, Tanzania. A total of 71 respondents were interviewed in Kisangura, Nyamburi and Machochwe villages in November 2010, using questionnaires. Villagers hunted small mammals mainly by dogs for cultural and ornamental reasons. Products of African savannah hare (Lepus microtis), …

Geospatial Resolution Of Human And Bacterial Diversity With City-Scale Metagenomics, Ebrahim Afshinnekoo, Cem Meydan, Shanin Chowdhury, Dyala Jaroudi, Collin Boyer, Nick Bernstein, Julia M. Maritz, Darryl Reeves, Jorge Gandara, Sagar Chhangawala, Sofia Ahsanuddin, Amber Simmons, Timothy Nessel, Bharathi Sundaresh, Elizabeth Pereira, Ellen Jorgensen, Sergios-Orestis Kolokotronis, Nell Kirchberger, Isaac Garcia, David Gandara, Sean Dhanraj, Tanzina Nawrin, Yogesh Saletore, Noah Alexander, Priyanka Vijay, Elizabeth M. Hénaff, Paul Zumbo, Michael Walsh, Gregory D. O'Mullan, Scott Tighe, Joel T. Dudley, Anya Dunaif, Sean Ennis, Eoghan O'Halloran, Tiago R. Magalhaes, Braden Boone, Angela L. Jones, Theodore R. Muth, Katie Schneider Paolantonio, Elizabeth Alter, Eric E. Schadt, Jeanne Garbarino, Robert J. Prill, Jane M. Carlton, Shawn Levy, Christopher E. Mason

Publications and Research

The panoply of microorganisms and other species present in our environment influence human health and disease, especially in cities, but have not been profiled with metagenomics at a city-wide scale. We sequenced DNA from surfaces across the entire New York City (NYC) subway system, the Gowanus Canal, and public parks. Nearly half of the DNA (48%) does not match any known organism; identified organisms spanned 1,688 bacterial, viral, archaeal, and eukaryotic taxa, which were enriched for harmless genera associated with skin (e.g., Acinetobacter). Predicted ancestry of human DNA left on subway surfaces can recapitulate U.S. Census demographic data, and bacterial …