Biology Commons^™

Role Of Ime4 Protein In Pho Regulon Of S.Cerevisiae., Jenisha Ghimire

LSU New Orleans Theses and Dissertations

In the yeast Saccharomyces cerevisiae, the IME4 methyltransferase, interacts genetically with methyl binding protein, Pho92, to affect the expression of PHO regulon target genes. Cells mutant in IME4 or PHO92 show increases in the RNA abundance of PHO regulon target genes. The increase in the RNA abundance of the PHO regulon target genes is not additive in the cells double mutant in IME4 and PHO92. Hence, Ime4 and Pho92 interact in a single pathway in PHO regulon. Surprisingly, cells overexpressing IME4 and MUM2 shows increase in some PHO regulon target genes, indicating that IME4 affects the PHO regulon target …

Chasin’ Tail In Southern Alabama: Delineating Programmed And Stimulus-Driven Grooming In Odocoileus Virginianus, Kyle Heine

LSU New Orleans Theses and Dissertations

This study examined variation in ectoparasite density and grooming behavior of naturally occurring white-tailed deer (Odocoileus virginianus) in southwest Alabama. Stimulus-driven grooming as well as the intraspecific body size and vigilance principles of programmed grooming were tested. During the rut, males had a higher average tick (Ixodidae) density than females and exhibited complete separation of tick parasitism between non-rutting and rutting periods, supporting the vigilance principle. Stimulus-driven grooming was supported, as both fawns and yearlings had significantly higher fly (Hippoboscidae) and combined fly/tick densities than adults, and fawns oral groomed at a significantly higher rate than adults, even …

Pervasive And Strong Effects Of Plants On Soil Chemistry: A Meta-Analysis Of Individual Plant ‘Zinke’ Effects, Bonnie G. Waring, Leonor Álvarez-Cansino, Kathryn E. Barry, Kristen K. Becklund, Sarah Dale, Maria G. Gei, Adrienne B. Keller, Omar R. Lopez, Lars Markesteijn, Scott A. Mangan, Charlotte E. Riggs, Maria Elizabeth Rodríguez-Ronderos, R. Max Segnitz, Stefan A. Schnitzer, Jennifer S. Powers

Biological Sciences Faculty Research and Publications

Plant species leave a chemical signature in the soils below them, generating fine-scale spatial variation that drives ecological processes. Since the publication of a seminal paper on plant-mediated soil heterogeneity by Paul Zinke in 1962, a robust literature has developed examining effects of individual plants on their local environments (individual plant effects). Here, we synthesize this work using meta-analysis to show that plant effects are strong and pervasive across ecosystems on six continents. Overall, soil properties beneath individual plants differ from those of neighbours by an average of 41%. Although the magnitudes of individual plant effects exhibit weak relationships with …

The Role Of Arabidopsis Aminoalcoholphosphotransferase 1 And 2 In Plant Development And Oil Production And Transcriptional Regulation Of Seed Oil Accumulation By Glabra2, Yu Liu

Dissertations

Vegetable oils are important commodities as human foods, animal feeds, renewable industrial feedstocks, and biofuels. Many biochemical and regulation events are involved in seed oil formation, including phospholipids metabolism and transcriptional regulation. In this work, I investigated 1) the role of aminoalcoholphosphotransferases (AAPTs) in phospholipid synthesis and plant development, 2) the effects of AAPTs on seed storage lipid production in Arabidopsis and the emerging oil crop Camelina, and 3) the interaction of the lipid mediator phosphatidic acid (PA) with GLABRA2 (GL2), a negative regulator in seed oil production. AAPTs are the enzymes that produce phosphatidylcholine (PC) and phosphatidylethanolamine (PE). The …

Proteins Of Bartonella Bacilliformis:Candidates For Vaccine Development, Cesar Henriquez-Camocho, Palmira Ventosilla, Michael F. Minnick, Joaquim Ruiz, Ciro Maguina

Biological Sciences Faculty Publications

Bartonella bacilliformis is the etiologic agent of Carrion's disease suggest complex adaptations by the bacterium to the human host, with the overall objectives of persistence, maintenance of a reservoir state for vectorial transmission, and immune evasion. These events include a multitude of biochemical and genetic mechanisms involving both bacterial and host proteins. This review focuses on proteins involved in interactions between B. bacilliformis and human host. Some of them (e.g., flagellin, Brps, IalB, FtsZ, Hbp/Pap31, and other outer membrane proteins) are potential protein antigen candidates for a synthetic vaccine.

A Novel Synthetic Yeast For Enzymatic Biodigester Pretreatment, Tianyu Tan, Mark S. Aronson, Arren Liu, Jill H. Osterhus, Melissa Robins, Suraj Mohan, Erich Leazer, Bowman Clark, Alexa Petrucciani, Katherine Lowery, James Welch, Casey Martin, Helena Lysandrou, Michael E. Scharf, Jenna Rickus

The Summer Undergraduate Research Fellowship (SURF) Symposium

Lignin, a complex organic polymer, is a major roadblock to the efficiency of biofuel conversion as it both physically blocks carbohydrate substrates and poisons biomass degrading enzymes, even if broken down to monomer units. A pretreatment process is often applied to separate the lignin from biomass prior to biofuel conversion. However, contemporary methods of pretreatment require large amounts of energy, which may be economically uncompelling or unfeasible. Taking inspiration from several genes that have been isolated from termites and fungi which translate to enzymes that degrade lignin, we want to establish a novel “enzymatic pretreatment” system where microbes secrete these …

Viewing The Extracellular Matrix: An Imaging Method For Tissue Engineering, Michael Drakopoulos, Sarah Calve

The Summer Undergraduate Research Fellowship (SURF) Symposium

The field of regenerative medicine seeks to create replacement tissues and organs, both to repair deficiencies in biological function and to treat structural damage caused by injury. Scaffoldings mimicking extracellular matrix (ECM), the structure to which cells attach to form tissues, have been developed from synthetic polymers and also been prepared by decellularizing adult tissue. However, the structure of ECM undergoes significant remodeling during natural tissue repair, suggesting that ECM-replacement constructs that mirror developing tissues may promote better regeneration than those modeled on adult tissues. This work investigated the effectiveness of a method of viewing the extracellular matrix of developing …

Detecting Genomic Regions Responsible For Resistance In Arabidopsis, Valeria Cancino, Anjali Iyer-Pascuzzi, Rucha Karve

The Summer Undergraduate Research Fellowship (SURF) Symposium

Ralstonia solanacearum is a soil-borne plant root colonizing pathogen and the casual agent of bacterial wilt (BW) disease. BW leads to severe yield loss in a wide variety of agricultural commodity crops, such as tomato, banana, and pepper. In this study, we look at the plant-pathogen interaction between Ralstonia solanacearum and various ecotypes of Arabidopsis thaliana with the goal of finding resistant ecotypes. To identify resistant ecotypes, seeds are first sterilized and left to soak in the dark. Then the seeds are plated on agar media, transferred to a growth chamber, and allowed to grow for 5 days. On day …

Seasonality Of Forensically Relevant Diptera In Northwestern Indiana, Sarah M. Stanley, Trevor Stamper

The Summer Undergraduate Research Fellowship (SURF) Symposium

Minimum postmortem interval (mPMI) estimations are critical to solving cases of equivocal death and the accuracy of these predictions can depend on the understanding of necrophagous fly successional patterns. In order to better understand the successional patterns of necrophagous flies, it is important to know the seasonality of forensically relevant fly species—that is, the baseline pattern of their presence and absence in relation to annually cyclic environmental factors. Since many environmental factors play a role in insect seasonality, it is possible that some of these factors can be summed to create an index that represents seasonality in a simpler form. …

Novel Seed Germination In Response To California’S Historic Drought May Deplete Soil Seed Banks, Amanda M. Burns, Victoria M. Lekson, Helen I. Holmlund, Stephen D. Davis

Biology

We observed novel seed germination, without a fire cue, in an obligate seeding species of chaparral (Ceanothus megacarpus) during historic drought in California (2014). We hypothesized that premature germination was promoted by drought-induced canopy dieback among adults that allowed high radiation loads to reach normally shaded soils, cracking seed coats, facilitating water uptake. We hypothesized that because premature seed germination was late in the season (April, when December is typical) roots would not have time to penetrate deep moisture resources before the onset of summer drought, leading to excessive mortality and eventual depletion of soil seed banks. We …

How Diverse Detrital Environments Influence Nutrient Stoichiometry Between Males And Females Of The Co-Occurring Container Mosquitoes Aedes Albopictus, Ae. Aegypti, And Culex Quinquefasciatus, Donald A. Yee, Michael G. Kaufman, Nnaemeka F. Ezeakacha

Faculty Publications

Allocation patterns of carbon and nitrogen in animals are influenced by food quality and quantity, as well as by inherent metabolic and physiological constraints within organisms. Whole body stoichiometry also may vary between the sexes who differ in development rates and reproductive allocation patterns. In aquatic containers, such as tree holes and tires, detrital inputs, which vary in amounts of carbon and nitrogen, form the basis of the mosquito-dominated food web. Differences in development times and mass between male and female mosquitoes may be the result of different reproductive constraints, which could also influence patterns of nutrient allocation. We examined …

Comparative Foliar Water Uptake And Leaf Hydrophobicity In Island Versus Mainland Ferns, Victoria M. Lekson, Helen I. Holmlund, Nicole A. Nakamatsu, Amanda M. Burns, Stephen D. Davis

Biology

In 2014, Southern California experienced the worst drought in the last 1,200 years. In this study, the mechanisms of drought tolerance for eight species of ferns in the Santa Monica Mountains were assessed with a focus on foliar water uptake and hydrophobicity of frond (leaf) surfaces. We measured gravimetric foliar water uptake and angle of contact for a drop of water on a frond. Seasonal shifts were tracked as a method of following drought response patterns.

Fog is becoming more important due to limited ground water. Fog is far more common on Santa Cruz Island off the coast of California …

Large Amplitude, Short Wave Peristalsis And Its Implications For Transport, Lindsay D. Waldrop, Laura A. Miller

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Valveless, tubular pumps are widespread in the animal kingdom, but the mechanism by which these pumps generate fluid flow is often in dispute. Where the pumping mechanism of many organs was once described as peristalsis, other mechanisms, such as dynamic suction pumping, have been suggested as possible alternative mechanisms. Peristalsis is often evaluated using criteria established in a technical definition for mechanical pumps, but this definition is based on a small-amplitude, long-wave approximation which biological pumps often violate. In this study, we use a direct numerical simulation of large-amplitude, short-wave peristalsis to investigate the relationships between fluid flow, compression frequency, …

Predicting Landscape-Scale Co 2 Flux At A Pasture And Rice Paddy With Long-Term Hyperspectral Canopy Reflectance Measurements, J. H. Matthes, S. H. Knox, C. Sturtevant, O. Sonnentag

Dartmouth Scholarship

Measurements of hyperspectral canopy reflectance provide a detailed snapshot of information regarding canopy biochemistry, structure and physiology. In this study, we collected 5 years of repeated canopy hyperspectral reflectance measurements for a total of over 100 site visits within the flux footprints of two eddy covariance towers at a pasture and rice paddy in northern California. The vegetation at both sites exhibited dynamic phenology, with significant interannual variability in the timing of seasonal patterns that propagated into interannual variability in measured hyperspectral reflectance. We used partial least-squares regression (PLSR) modeling to leverage the information contained within the entire canopy reflectance …

Hydrologic Modeling Of The Effects Of Stormwater Runoff In Plaster Creek Watershed, Ryan Degroot, Julie Wildschut, Robert Hoeksema

Student Papers and Reports

No abstract provided.

Installation Of Rain Gardens In The Alger Heights Community, Wesley Dykstra, Dena De Kryger, Mike Ryskamp, David P. Warners

Student Papers and Reports

No abstract provided.

The Effect Of Environmental Selection Pressure On The Rate Of Recombination To An Advantageous Receptor Mutation In Bovine Coronavirus, Gavin Schroter, Sally Hall, Mona Hwang, Monica Borucki

STAR Program Research Presentations

Bovine Coronavirus (BCoV) is an important analogue in understanding the effectiveness of zoonotic, single-stranded, positive sense RNA viruses. Many of the most recent viral outbreaks have been attributed to RNA viruses that have one, or more, animal reservoirs [1]. BCoV is such a great candidate for studying these types of viruses because they are from the family Coronaviridae, which also contains the viruses that cause severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS). The goal of this study was to observe changes in genetic makeup of the virus’ outer membrane Spike protein via recombination between two …

Chemical Oxygen Demand Reduction Using The Algae Dunaliella Primolecta And Chlorella Vulgaris, Angeles L. Mora, Alejandro Hernandez, Alejandro Calderón-Urrea

STAR Program Research Presentations

Farm industry wastewater is characterized by high organic materials and by high chemical oxygen demand (COD). Farms with large livestock and poultry operations can be a major source of wastewater thus a major concern for effective environmental and industrial management. Effective environmental and industrial management are high in cost therefor biofuels produced from plants have a potential of replacing a portion of fossil fuel consumption with a renewable efficient alternative. Due to California’s water crisis in the recent years, it is questioned if a biological treatment system that uses algal growth to create renewable energy in the form of biodiesel …

Using High Throughput Genomic Sequencing To Predict Ecological Impacts On Sea Turtle Populations, Lesley Anderson

STAR Program Research Presentations

Marine turtles are long-lived, migratory vertebrates that encounter a variety of human and natural stressors throughout their lives. Understanding the biology and threats of these animals is challenging because they are hard to observe, and can migrate across whole ocean basins. Minimally invasive sampling techniques (e.g., blood samples) allow us to learn about their physiology, genetics, and the environmental conditions they have experienced. In this project, we developed a novel method to extract the RNA from whole green and loggerhead turtle blood from animals inhabiting a variety of sites across the Pacific Ocean. Some habitats are more pristine, while others …

Characterization Of Putative Wnt3a-Inducible Enhancers, Katelynn C. Lee, Nicholas Hum, Aimy Sebastian, Gabriela Loots

STAR Program Research Presentations

The Wnt signaling pathway has been previously shown to play a major role in regulating bone metabolism and it is emerging as a target for the therapeutic intervention of bone thinning disorders such as osteoporosis. Several Wnt proteins have been shown to be expressed in bone and mutations in Wnt pathway members such as Wnt co-receptor Lrp5 and Wnt inhibitor Sost have been shown to be associated with low or high bone mass disorders, however, very little is known about specific roles played by different Wnt ligands in bone development, repair and remodeling. To identify downstream targets of Wnt signaling …

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Estrogen-Dependent Expression And Subcellular Localization Of The Tight Junction Protein Claudin-4 In Hec-1a Endometrial Cancer Cells, M. E. Cuevas, J. M. Gaska, A. C. Gist, Jonathan M. King, R. A. Sheller, M. C. Todd

Biology Faculty Research

Endometrial cancer is the most common female reproductive cancer in the United States and is associated with deregulated tight junction protein expression. Given the highly estrogen-responsive nature of this tissue, we investigated the effects of estrogen and its agonist, 4-OH TAM, on the expression and subcellular localization of the tight junction protein claudin-4 (CLDN-4), in HEC-1A endometrial cancer cells. In untreated HEC-1A cells, we observed dramatic overexpression of claudin-4 protein. In addition, differential detergent extraction analysis indicated that claudin-4 was localized primarily in the membrane but also found in the cytosolic, nuclear and cytoskeletal fractions. Upon exposure of HEC-1A to …

Tradeoffs Of Warm Adaptation In Aquatic Ectotherms: Live Fast, Die Young?, A. P. Porreca, E. Martinez, R. E. Colombo, Michael A. Menze

Faculty Research & Creative Activity

In the face of a changing climate, questions regarding sub-lethal effects of elevated habitat temperature on the physiology of ectotherms remain unanswered. In particular, long-term responses of ectotherms to the warming trend in tropical regions are unknown and significantly understudied due primarily to the difficulties in specimen and community traceability. In freshwater lakes employed as cooling reservoirs for power plants, increased physiological stress from high water temperature can lead to an increase in mortality, reduce growth, and potentially alter the community structure of fishes. Throughout this study, we employ this highly tractable system to assess how elevated thermal regimes can …

Overexpression Of Patatin‐Related Phospholipase Aiiiδ Altered Plant Growth And Increased Seed Oil Content In Camelina, Xuemin Wang, Maoyin Li, Fang Wei, Amanda Tawfall, Michelle Tang, Allison Saettele

Biology Department Faculty Works

Camelina sativa is a Brassicaceae oilseed species being explored as a biofuel and industrial oil crop. A growing number of studies have indicated that the turnover of phosphatidylcholine plays an important role in the synthesis and modification of triacylglycerols. This study manipulated the expression of a patatin‐related phospholipase AIIIδ (pPLAIIIδ) in camelina to determine its effect on seed oil content and plant growth. Constitutive overexpression of pPLAIIIδ under the control of the constitutive cauliflower mosaic 35S promoter resulted in a significant increase in seed oil content and a decrease in cellulose content. In addition, the content of major membrane phospholipids, …

Shark Bay Crab Managed Fishery Draft Management Plan 2015, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

The Non-Native Plant Rosa Multifl Ora Expresses Shade Avoidance Traits Under Low Light Availability, Rebecca E. Drenovsky, Daniel M. Dlugos, Hillary Collins, Elise M. Bartelme

Biology

PREMISE OF THE STUDY: Shade tolerance is a key trait promoting invasive plant performance in forest interiors. Rosa multifl ora is a problematic invasive shrub in the northeastern United States, occurring in edge habitats and encroaching into forests. Our objective was to evaluate the shade tolerance of R. multifl ora to assess how ecophysiological traits may facilitate its spread into forest interiors. METHODS: In the fi eld, we documented shrub and seed bank density, fecundity, phenology, and seasonal photosynthetic rates of R. multifl ora in contrasting light environments. In the greenhouse, we exposed seedlings to simulated canopy treatments by altering …

Riparian Vegetation, Colorado River, And Climate: Five Decades Of Spatiotemporal Dynamics In The Grand Canyon With River Regulation, Joel B. Sankey, Barbara Ralston, Paul E. Grams, John C. Schmidt, Laura E. Cagney

Watershed Sciences Faculty Publications

Documentation of the interacting effects of river regulation and climate on riparian vegetation has typically been limited to small segments of rivers or focused on individual plant species. We examine spatiotemporal variability in riparian vegetation for the Colorado River in Grand Canyon relative to river regulation and climate, over the five decades since completion of the upstream Glen Canyon Dam in 1963. Long-term changes along this highly modified, large segment of the river provide insights for management of similar riparian ecosystems around the world. We analyze vegetation extent based on maps and imagery from eight dates between 1965 and 2009, …

Estimating Bighorn Sheep (Ovis Canadensis) Abundance Using Noninvasive Sampling At A Mineral Lick Within A National Park Wilderness Area, Kathryn A. Schoenecker, Mary Kay Watry, Laura E. Ellison, Michael K. Schwartz, Gordon Luikart

Biological Sciences Faculty Publications

Conservation of species requires accurate population estimates. We used genetic markers from feces to determine bighorn sheep abundance for a herd that was hypothesized to be declining and in need of population status monitoring. We sampled from a small but accessible portion of the population's range where animals natural congregate at a natural mineral lick to test whether we could accurately estimate population size by sampling from an area where animals concentrate. We used mark-recapture analysis to derive population estimates, and compared estimates from this smaller spatial sampling to estimates from sampling of the entire bighorn sheep range. We found …

Contrasting Styles In Cognition And Behaviour In Bumblebees And Honeybees., David F Sherry, Caroline G Strang

Psychology Publications

Bumblebees and honeybees have been the subjects of a great deal of recent research in animal cognition. Many of the major topics in cognition, including memory, attention, concept learning, numerosity, spatial cognition, timing, social learning, and metacognition have been examined in bumblebees, honeybees, or both. Although bumblebees and honeybees are very closely related, they also differ in important ways, including social organization, development, and foraging behaviour. We examine whether differences between bumblebees and honeybees in cognitive processes are related to differences in their natural history and behaviour. There are differences in some cognitive traits, such as serial reversal learning and …

Bioregulatory Systems Medicine: An Innovative Approach To Integrating The Science Of Molecular Networks, Inflammation, And Systems Biology With The Patient's Autoregulatory Capacity?, Alyssa W Goldman, Yvonne Burmeister, Konstantin Cesnulevicius, Martha Herbert, Mary Kane, David Lescheid, Timothy Mccaffrey, Myron Schultz, Bernd Seilheimer, Alta Smit, Georges St Laurent, Brian Berman

Medicine Faculty Publications

Bioregulatory systems medicine (BrSM) is a paradigm that aims to advance current medical practices. The basic scientific and clinical tenets of this approach embrace an interconnected picture of human health, supported largely by recent advances in systems biology and genomics, and focus on the implications of multi-scale interconnectivity for improving therapeutic approaches to disease. This article introduces the formal incorporation of these scientific and clinical elements into a cohesive theoretical model of the BrSM approach. The authors review this integrated body of knowledge and discuss how the emergent conceptual model offers the medical field a new avenue for extending the …