Biology Commons^™

An Investigation Into The Biological Responses Induced Following Oral Exposure To Silver Nanoparticles, Anna Murphy

Doctoral

This study aims to investigate the biological responses induced by silver nanoparticles (AgNP) following oral exposure. The commonality of AgNP in consumer goods highlights the need for a thorough investigation into the interaction with and subsequent responses evoked in living systems following exposure. Firstly, the potential interaction with and effect of biofluid components, namely cholic acid (CA), deoxycholic acid (DCA) and ursodeoxycholic acid (UDCA), on AgNP toxicity was investigated. Two cell lines corresponding to organs related to the biofluid components, HepG-2 a hepatocellular carcinoma derived from liver tissue and Hep2 an epithelial cell line, were employed. Physicochemical and cytotoxic screening …

Isolation & Characterization Of Bacteria In The Built Environment: Measuring The Effect Of Pharmaceuticals On Growth, Amanda V. Finck, Kelly J. Digeronimo, Nene S. Sy, Zakiya Whatley

Student Publications

This work reports the isolation and characterization of bacteria from the built environment at Gettysburg College in Gettysburg, PA. Surfaces of a water fountain on campus were swabbed and serially streaked to isolate multiple bacteria on R2A agar. Following multiple rounds of growth, the unknown microbial candidates were narrowed to two visibly­distinct organisms. Morphological characterization and phylogenetic identification based on 16S rDNA sequencing revealed that the isolates were Chryseobactierum hispalense and Microbacterium maritypicum. We report synergistic biofilm formation between Chryseobactierum hispalense and Microbacterium maritypicum. The contamination of drinking water with varying levels of personal care products and pharmaceuticals (PCPPs) is …

Molecular Phylogeny And Systematics Of Spider Wasps (Hymenoptera: Pompilidae): Redefining Subfamily Boundaries And The Origin Of The Family, Caleb T. Walker, J. Rodriguez, M. S. Wasbauer, Carol D. Von Dohlen, James P. Pitts

Biology Faculty Publications

Spider wasps (Hymenoptera: Pompilidae) constitute a monophyletic family supported by numerous morphological and behavioural traits. The subfamilial and tribal classifications, however, have a history of conflicting and confusing designations and nomenclature. Here, we reconstruct a molecular phylogeny of Pompilidae from Bayesian and maximum-likelihood analyses of four nuclear molecular markers (elongation factor-1 ë± F2 copy, long-wavelength rhodopsin, RNA polymerase II, and 28S ribosomal RNA). A Bayesian divergence-time estimation analysis was performed using four calibration points and an ancestral-area reconstruction was performed with a Bayesian binary Markov chain Monte Carlo method. New relationships are recovered, and new subfamilial delimitations are proposed and …

Principles Of Biology Ii Lab Manual, Susan Burran, David Desrochers

Biological Sciences Open Textbooks

This lab manual was created for BIOL 1108, Principles of Biology II, through an ALG Textbook Transformation Grant. Copies of this lab manual by chapter are also available at http://libguides.daltonstate.edu/PrinciplesofBiology/labmanual.

Accessible files with optical character recognition (OCR) and auto-tagging provided by the Center for Inclusive Design and Innovation.

Principles Of Biology I Lab Manual, Susan Burran, David Desrochers

Biological Sciences Open Textbooks

This lab manual was created for BIOL 1107, Principles of Biology I, through an ALG Textbook Transformation Grant. Copies of this lab manual by chapter are also available at http://libguides.daltonstate.edu/PrinciplesofBiology/labmanual.

Accessible files with optical character recognition (OCR) and auto-tagging provided by the Center for Inclusive Design and Innovation.

The Effectiveness Of Background Noise During A Sleep Deprived Eeg: A Randomised Control Trial, Louise Grant

Masters

Introduction Sleep Deprived Electroencephalogram’s (EEG’s) are usually carried out routinely in dedicated children’s Hospitals as they have been shown to increase the yield of the study. However, despite sleep deprivation being successfully carried out prior to the EEG the patient may fail to fall asleep. Various techniques have been developed to enhance sleep, such as the use of “white or background noise”. This study examined the use of background noise during the sleep portion of the EEG in comparison with a control group. Methodology This was a randomised control trial with two interventions (two different types of background noise) and …

Groundwater Thresholds For Root Decomposition And The Relation To Barrier Island Ecological State Changes, Matthew Lee Smith

Biological Sciences Theses & Dissertations

Barrier islands off the eastern shore of Virginia exhibit distinct habitats that abruptly transition between periodically brackish/freshwater marshes, wooded swales, and sparsely vegetated dunes. There is strong evidence that the plant communities and ecosystem processes occurring in each habitat are primarily influenced by nutrient availability and the distance between two of the three free surfaces: land and freshwater. At the Virginia Coast Reserve-Long Term Ecological Research Site in Virginia, USA, thresholds to belowground decomposition rates were identified by measuring decay of native roots and rhizomes at 32 elevations in relation to mean annual groundwater levels (-0.356 – 1.937 m). Negative …

Lianas Reduce Carbon Accumulation And Storage In Tropical Forests, Geertje M. F. Van Der Heijden, Jennifer S. Powers, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Tropical forests store vast quantities of carbon, account for one-third of the carbon fixed by photosynthesis, and are a major sink in the global carbon cycle. Recent evidence suggests that competition between lianas (woody vines) and trees may reduce forest-wide carbon uptake; however, estimates of the impact of lianas on carbon dynamics of tropical forests are crucially lacking. Here we used a large-scale liana removal experiment and found that, at 3 y after liana removal, lianas reduced net above-ground carbon uptake (growth and recruitment minus mortality) by ∼76% per year, mostly by reducing tree growth. The loss of carbon uptake …

GabaB Receptors Couple To GαQ To Mediate Increases In Voltage-Dependent Calcium Current During Development, Andrew S. Karls, Michelle Mynlieff

Biological Sciences Faculty Research and Publications

Metabotropic GABA_B receptors are known to modulate the activity of voltage-dependent calcium channels. Previously, we have shown that GABA_B receptors couple to a non-G_i/o G-protein to enhance calcium influx through L-type calcium channels by activating protein kinase C in neonatal rat hippocampal neurons. In this study, the components of this signaling pathway were investigated further. Gα_q was knocked down using morpholino oligonucleotides prior to examining GABA_B-mediated enhancement of calcium influx. When Gα_q G-proteins were eliminated using morpholino-mediated knockdown, the enhancing effects of the GABA_B receptor agonist baclofen (10 μM) on calcium current …

Whole-Genome Sequencing Of Kshv From Zambian Kaposi’S Sarcoma Biopsies Reveals Unique Viral Diversity, Landon N. Olp, Adrien Jeanniard, Clemence Marimo, John T. West, Charles Wood

Nebraska Center for Virology: Faculty Publications

Kaposi’s sarcoma-associated herpesvirus (KSHV) is the etiological agent for Kaposi’s sarcoma (KS). Both KSHV and KS are endemic in sub-Saharan Africa where approximately 84% of global KS cases occur. Nevertheless, whole-genome sequencing of KSHV has only been completed using isolates from Western countries—where KS is not endemic. The lack of whole-genome KSHV sequence data from the most clinically important geographical region, sub-Saharan Africa, represents an important gap as it remains unclear whether genomic diversity has a role on KSHV pathogenesis. We hypothesized that distinct KSHV genotypes might be present in sub-Saharan Africa compared to Western countries. Using a KSHV-targeted enrichment …

Systematics And Evolution Of The Ronnbergia Alliance (Bromeliaceae): History Of Disjunct Diversification In Three Biodiversity Hotspots Of The Neotropics, Julian Andres Aguirre Santoro

Dissertations, Theses, and Capstone Projects

The systematics, biogeography and evolution of the 'Ronnbergia Alliance,' a nested lineage within the Core Bromelioideae, were investigated. In the first chapter, the phylogenetic relationships of the Ronnbergia Alliance were reconstructed using three chloroplast and three nuclear DNA sequence markers in combination with a wide species sampling across the Core Bromelioideae and a nearly complete species-level sampling of the five species complexes that likely comprise the Ronnbergia Alliance. The analysis indicates that the Ronnbergia Alliance is a robust monophyletic group sister to the remaining Core Bromelioideae, and it is composed by species of the polyphyletic genera Aechmea, Hohenbergia and Ronnbergia. …

Musical Regularity And Rhythmic Patterns: A Quantitative Analysis Of Birdsong Structure, Eathan Ezra Janney

Dissertations, Theses, and Capstone Projects

Birdsong is a complex, learned behavior that, like music, has meaningful units at multiple timescales. Birds perform by constructing extended presentations of their phrase repertoire. Each bird's repertoire is built from small units, such as syllables, or groups of syllables with characteristic pitch, rhythm, and timbre. Like a musician each bird has its unique structure of performance that communicates its individual identity. Also contained within a bird's performance, is information about its group identity and species identity. Like a musician's performance, a bird's singing affects the behavioral state of listeners'birds perform to attract mates and defend territory.

Subjectively, many can …

Cultural Evolution In Natural Populations: A Quantitative Bioacoustic Analysis, Chenghui Ju

Dissertations, Theses, and Capstone Projects

Bird song is a powerful model system in behavioral biology, especially for learning and cultural evolution. Understanding the origins and maintenance of vocal diversity in nature is fundamentally important to acoustic biology. Here, we propose a large-scale, integrative population analysis of nearly 2000 songs of the house finch (Haemorhous mexicanus) (190 individuals) collected in western Long Island of New York during an interval of 37 years (between 1975 and 2012) to explore cultural change of bird songs. Generally, I have three aims in this study. In the chapter 1, to facilitate acoustic analysis for field recordings with ambient noise, of …

The Role Of The Vta Nmda Receptors, Vta Da Cells And Vta Terminal Regions In Reward-Related Learning, Karen Kest

Dissertations, Theses, and Capstone Projects

Reward-related learning occurs when an initially neutral stimulus acquires the capacity to elicit responses similar to an unconditioned stimulus (US) with which it is associated, in which case the stimulus now functions as a conditioned stimulus (CS). The mechanisms whereby stimuli come to function as CSs are not fully understood and comprise the theme of this dissertation. We have previously proposed that coincident signals from an unconditioned and the eventual conditioned stimulus (US and CS) signals on dopamine (DA) cells of the ventral tegmental area (VTA) leads to strengthening of CS synapses, allowing the CS to acquire the ability to …

Climate, Resource Phenology, And Demographic Population Structure Impacts On Songbird Habitat Quality, Ashley Ozelski

Dissertations, Theses, and Capstone Projects

Monitoring bird populations becomes more complex as climate change alters species' relationships with their habitats. The presence of a species does not necessarily indicate a thriving population; in fact, we expect to see changes in demography and nest success before extinction at a site. Here, I first model aspects of demography as a proxy for habitat quality across a large portion of a species' range, using land cover and climate predictors. I show a gradient of high to low habitat quality from north to south within the range for the Yellow Warbler (Setophaga petechia), with summer temperature and …

Pseudomonas Bacteriophage Phi6 As A Model For Virus Emergence, Brian Elwood Ford

Dissertations, Theses, and Capstone Projects

The Pseudomonas bacteriophage Φ6 has a long and well-established history as a model organism. Here we describe a set of experiments to extend this model system to concepts previously unclaimed. Chapter 1 presents a brief background of the ecology of viruses that infect microorganisms. Chapter 2 examines genetic mutations allowing for host range expansion. Chapter 3 presents a novel paired strain assay to study how a non genetic host-acquired factor affects fitness of these enveloped viruses on subsequent hosts. Chapter 4 is an extension of this system to include how the bacteria host is affected in virus-host coevolution.

Mechanisms Of Vocal Coordination In Zebra Finches, Jonathan I. Benichov

Dissertations, Theses, and Capstone Projects

Social animals frequently emit communication calls. Although these calls are often innate in their acoustic structure, they can be used adaptably to coordinate behavior with other individuals. It is not known, however, what each animal needs to learn in order to achieve and maintain synchronized call patterns with others. To study this process, we have developed a vocal robot that can be programed to generate call patterns or to sense a bird's contact (short) calls and respond with precisely timed call answers. By varying the robot's vocal behavior, including call timing and rhythm, we tested how interacting zebra finches adapt …

Systematic Studies Of Elaphoglossum Section Polytrichia (Dryopteridaceae), Fernando Bittencourt De Matos

Dissertations, Theses, and Capstone Projects

Elaphoglossum is the largest genus of the largest family of ferns, the Dryopteridaceae. It has over 600 species distributed in the temperate and tropical regions of the world, but it is especially diverse in the Neotropics, where ca. 80% of the species occur. Morphologically, the genus is usually characterized by simple entire leaves, free veins, acrostichoid sori, and phyllopodia. One of the major clades within Elaphoglossum is the "subulate-scaled clade," which includes all species with subulate scales on the leaves. These scales are often patent and enrolled lengthwise, imparting a bristly or shaggy appearance to the plants. Previous studies have …

Diversity And Phylogeography Of Anurans Of The Highlands Of Ethiopia, Xenia Freilich

Dissertations, Theses, and Capstone Projects

Located in Eastern Africa, Ethiopia is a country of unique geological features, among them the largest continuous Afro-alpine zone in Africa and the Great Rift Valley (GRV). The GRV formation began ~20 mya; it is a fault system that splits the central Ethiopian dome in two separate highland systems (Baker et al., 1972, Chorowicz, 2005). In spite of the general assumption that the GRV has played a major role in shaping the biodiversity of the country, its influence has not been fully investigated, as only a handful of studies have addressed its impact on the phylogeographic and evolutionary history of …

Incipient Speciation In Freshwater Fish Species From Two Isolated Watersheds, Paula Gore Miller

Dissertations, Theses, and Capstone Projects

The process of speciation occurs as a result of restricted gene flow between segments of an interbreeding population occupying different geographic areas. This separation may result in isolated populations which undergo genetic and phenotypic changes. The Wisconsin glacial period, which ended approximately 17,500 years ago, dramatically altered the geography of North America. The glacier covered almost the entire North America as it advanced. Areas that were not covered with ice provided suitable habitats (refugia) for relict species that were previously widespread in the northern section of the continent. As the ice sheet retreated, animals and plants were able to return …

Population Genomics Of White-Footed Mice (Peromyscus Leucopus) In New York City, Stephen Edward Harris

Dissertations, Theses, and Capstone Projects

Urbanization significantly alters natural ecosystems. New York City (NYC) is one of the oldest and most urbanized cities in North America, but still maintains substantial populations of some native wildlife. The white-footed mouse, Peromyscus leucopus, is a common resident of NYC's forest fragments, and isolated populations may adapt in response to novel urban ecosystems. Using pooled transcriptome-wide RNAseq data, individually barcoded transcriptome-wide RNAseq data, and genome-wide RADseq data, I found genetic differentiation between urban and rural P. leucopus populations and evidence suggestive of local adaptation. I compared genome and transcriptome-wide SNP data in P. leucopus from relatively large urban …

The Ecology Of Winter Flounder From An Otolith Perspective, George William Jackman

Dissertations, Theses, and Capstone Projects

In this dissertation, sagittal otoliths were used as a lens to examine latent life history patterns in winter flounder (Pseudopleuronectes americanus) and also as a means of interpreting the species' relationship to their abiotic and biotic environment. Otoliths provide a unique and powerful perspective into the lives of the telost fishes, because they permanently record the spatial and temporal histories through sequential growth patterns from conception to capture. The patterns of growth and dormancy in the otolith are regulated by endogenous and exogenous rhythms, and as the otolith grows, trace elements are absorbed from the ambient environment and …

Matrix Stiffness Regulates Glial Cell Morphology And Differentiation, Mateusz M. Urbanski

Dissertations, Theses, and Capstone Projects

Studies from our laboratory have shown that inhibition of non-muscle myosin II (NMII) activity has opposite effects on the formation of myelin by oligodendrocytes (OL), the myelinating glia of the central nervous system (CNS) and Schwann cells (SC), which perform the same function in the peripheral nervous system (PNS). The decrease of NMII activity in SC impairs their ability to establish polarity and myelinate, while its inhibition in OL enhances process branching and increases the amount of myelin formed in vitro an in vivo. A growing number of studies have shown that NMII also plays a role in the ability …

The Rediscovery And Precarious Status Of Chihuahuan Dwarf Crayfish Cambarellus Chihuahuae, Evan W. Carson, Carlos Pedraza-Lara, María De Lourdes Lozano-Vilano, Gabino A. Rodríguez-Almaráz, Iris Banda-Villanueva, Lissette A. Sepúlveda-Hernández, Lilia Vela-Valladares, Andrea Cantú-Garza, Mauricio De La Maza-Benignos

Occasional Papers

We report rediscovery of the Chihuahuan Dwarf Crayfish Cambarellus chihuahuae at the desert spring Ojo Solo in Ejido Rancho Nuevo in Chihuahua, México. This species was reported to be extinct. Morphological evaluation of 12 voucher specimens confirmed the population as C. chihuahuae. Crayfish were abundant upon rediscovery in September 2012 and remained so throughout bimonthly monitoring from February 2014 to April 2015. Despite abundance at Ojo Solo, the species is critically imperiled, with four of its five native habitats dry and the remaining one in decline; however, a population was established at Ojo Caliente, a nearby natural refuge habitat we …

Reproductive Constraints Influence Habitat Accessibility, Segregation, And Preference Of Sympatric Albatross Species, Michelle Kappes, Scott Shaffer, Yann Tremblay, David Foley, Daniel Palacios, Steven Bograd, Daniel Costa

Faculty Publications, Biological Sciences

The spatiotemporal distribution of animals is dependent on a suite of factors, including the distribution of resources, interactions within and between species, physiological limitations, and requirements for reproduction, dispersal, or migration. During breeding, reproductive constraints play a major role in the distribution and behavior of central place foragers, such as pelagic seabirds. We examined the foraging behavior and marine habitat selection of Laysan (Phoebastria immutabilis) and black-footed (P. nigripes) albatrosses throughout their eight month breeding cycle at Tern Island, Northwest Hawaiian Islands to evaluate how variable constraints of breeding influenced habitat availability and foraging decisions. We used satellite tracking and …

Toward A More Ecologically Informed View Of Severe Forest Fires, Richard L. Hutto, Robert E. Keane, Rosemary L. Sherriff, Christopher T. Rota, Lisa A. Eby, Victoria A. Saab

Biological Sciences Faculty Publications

We use the historical presence of high-severity fire patches in mixed-conifer forests of the western United States to make several points that we hope will encourage development of a more ecologically informed view of severe wildland fire effects. First, many plant and animal species use, and have sometimes evolved to depend on, severely burned forest conditions for their persistence. Second, evidence from fire history studies also suggests that a complex mosaic of severely burned conifer patches was common historically in the West. Third, to maintain ecological integrity in forests born of mixed-severity fire, land managers will have to accept some …

A Phantom Road Experiment Reveals Traffic Noise Is An Invisible Source Of Habitat Degradation, Heidi E. Ware, Christopher J.W. Mcclure, Jay D. Carlisle, Jesse R. Barber

Biology Faculty Publications and Presentations

Decades of research demonstrate that roads impact wildlife and suggest traffic noise as a primary cause of population declines near roads. We created a “phantom road” using an array of speakers to apply traffic noise to a roadless landscape, directly testing the effect of noise alone on an entire songbird community during autumn migration. Thirty-one percent of the bird community avoided the phantom road. For individuals that stayed despite the noise, overall body condition decreased by a full SD and some species showed a change in ability to gain body condition when exposed to traffic noise during migratory stopover. We …

Book Reviews, Robert D. Aldridge, Michael B. Thompson, Malorie M. Hayes, Rafael O. De Sá, Christopher G. Lowe

Biology Faculty Publications

Reproductive Biology and Phylogeny of Lizards and Tuatara. J. L. Rheubert, D. S. Siegel, and S. E. Trauth (Eds.). 2014. CRC Press. ISBN 9781466579866. 760 p. $143.96 (hardcover).—

According to the authors, this book was intended to summarize the current knowledge of phylo- geny and reproduction of the Lepidosauria. I believe the authors have achieved their goal. Many of the chapters in this book are derived from presentations that took place at the Symposium on Reproductive Biology of Lizards at the Joint Meeting of Ichthyologists and Herpetologists held in Chattanooga, Tennessee in 2014. Although the majority of the authors are …

Metabolism, Gas Exchange, And Carbon Spiraling In Rivers, Robert O. Hall Jr, Jennifer L. Tank, Michelle A. Baker, Emma J. Rosi-Marshall, Erin R. Hotchkiss

Biology Faculty Publications

Ecosystem metabolism, that is, gross primary productivity (GPP) and ecosystem respiration (ER), controls organic carbon (OC) cycling in stream and river networks and is expected to vary predictably with network position. However, estimates of metabolism in small streams outnumber those from rivers such that there are limited empirical data comparing metabolism across a range of stream and river sizes. We measured metabolism in 14 rivers (discharge range 14–84 m3 s−1) in the Western and Midwestern United States (US). We estimated GPP, ER, and gas exchange rates using a Lagrangian, 2-station oxygen model solved in a Bayesian framework. GPP ranged from …

Clusterin Seals The Ocular Surface Barrier In Mouse Dry Eye, Aditi Bauskar, Wendy J. Mack, Jerome Mauris, Pablo Argüeso, Martin Heur, Barbara A. Nagel, Grant R. Kolar, Martin E. Gleave, Takahiro Nakamura, Shigeru Kinoshita, Janet Moradian-Oldak, Noorjahan Panjwani, Stephen C. Pflugfelder, Mark R. Wilson

Biological Sciences Faculty Research & Creative Works

Dry eye is a common disorder caused by inadequate hydration of the ocular surface that results in disruption of barrier function. The homeostatic protein clusterin (CLU) is prominent at fluid-tissue interfaces throughout the body. CLU levels are reduced at the ocular surface in human inflammatory disorders that manifest as severe dry eye, as well as in a preclinical mouse model for desiccating stress that mimics dry eye. Using this mouse model, we show here that CLU prevents and ameliorates ocular surface barrier disruption by a remarkable sealing mechanism dependent on attainment of a critical all-or-none concentration. When the CLU level …