Biology Commons^™

Muscle Fatigue Resistance Via Energy Drink Consumption — Assessment Of Pre- And Post- Experiment Participant Feedback, Mary Kathleen Robbins

Honors Theses

Energy drink consumption poses a health risk among college students, and long-term health implications are unclear. Because energy drinks are classified as dietary supplements, the FDA is not responsible for proving consumption is safe for the consumer. This research project studies the consumption of an energy drink and an energy bean's effect on muscle fatigue using a grip force transducer, subjective perceptions of the participants after consumption across the two trials, and subjects' opinion of energy drinks after the conclusion of the experiment. All subjects, ages 18-24 and regular users of caffeine, were recruited through email at the University of …

Understanding The Implications Of Climate Change For Birds Of The Family Phasianidae: Incorporating Fleshy Structures Into Models Of Heat Dissipation Capacity, Megan L. Smith

Honors Theses

Though widespread acceptance of global warming has generated a plethora of studies evaluating the potential responses of species to increased temperatures, until recently, species and genus-specific studies were not common and for many taxa such studies have yet to be completed. One particularly understudied group in this regard is the avian order Galliformes. In this study, I focus on the tribe Phasianidae. Furthermore, most studies evaluating the potential range changes of species in response to a changing climate fail to account for the ability of organisms to adapt to the changing climatic conditions, either via plastic adaptations or genetic adaptations. …

The Effects Of Acoustic Signals On The Endocrine Physiology Of Female Green Treefrogs, Hyla Cinerea, Melissa Paige Dent

Honors Theses

The vocalizations of male H. cinerea stimulate cortisol production in male receivers during close-range interactions. In many vertebrate species, males and females possess similar sensory neuroendocrine pathways, suggesting that acoustic signals may also stimulate CORT production in females. Males of this species would potentially benefit from stimulating CORT production in females because elevated CORT levels significantly decrease the strength of female preferences for energetically costly calls (i.e., calls produced at rapid rates). The primary objective of my honors research was to assess how the acoustic signals produced by male green treefrogs, Hyla cinerea, influence the endocrine physiology of female signal …

Oxygen Saturation During A Simulation Dive Response: Development Of An Experimental Protocol For An Undergraduate Physiology Laboratory, Michael S. Pergola

Honors Theses

There are issues concerning the amount of learning that actually takes place in the laboratory environment, and whether or not it is worth the investment of money, resources, and time. A laboratory protocol was designed to examine the human dive response, with the goals of generating multiple robust variables, creating a truly integrative laboratory experiment and improving lab education. The objectives of this exercise were to promote critical thinking, maximize collaboration, minimize social loafing and student engagement, promote critical thinking, and meet as many of the National Science Foundation's core competencies and assess effectiveness in achieving these objectives. The dive …

The Effects Of Testosterone On Calling Behavior In Green Treefrogs, Hyla Cinerea, Brandon Bunol

Honors Theses

Circulating androgen levels can have a profound effect on the expression of elaborate male traits and courtship behaviors that are important in attracting females. For example, elevated androgens are necessary for the expression of vocal displays used by male anurans (frogs and toads) to attract mates. However, the nature of the relationship between androgen levels and the extent, or magnitude, of vocalization in male anurans is unclear. For example, androgens may have a threshold effect on vocalization wherein elevation in androgens is required for vocal expression, but elevations above threshold do not mediate an increase in the magnitude or extent …

Does This Have Gluten? Comparison Of Gluten-Free And Unrestricted Diets In Intestinal Bacterial Populations And Diversity, Bradshaw Hammond

Honors Theses

As different diets continue to grow in popularity within the United States, the effect of these diets upon bacteria in the intestines is only beginning to be understood. This study focused on the effect that a shift to a gluten-free diet has on the human gut microbiome. Three genetically close subjects were selected for observation over a six month time period. One subject observed a consistent gluten-free diet. A second subject started on an unrestrictive diet, switched to a gluten-free diet for three months, then returned to an unrestricted diet for an additional three months. The third subject left an …

A Shifting Terrain: A Brief History Of The Adaptive Landscape, Michael Dietrich, Robert A. Skipper Jr.

Dartmouth Scholarship

This volume brings together prominent historians of science, philosophers, ecologists, and evolutionary biologists, with the aim of discussing the state of the art of the Adaptive Landscape from several different perspectives.

Functional Analysis Of The Ovarian Cancer Susceptibility Locus At 9p22.2 Reveals A Transcription Regulatory Network Mediated By Bnc2 In Ovarian Cells, Melissa Buckley

USF Tampa Graduate Theses and Dissertations

GWAS have identified several chromosomal loci associated with ovarian cancer risk. However, the mechanism underlying these associations remains elusive. We identify candidate functional Single Nucleotide Polymorphisms (SNPs) at the 9p22.2 ovarian cancer susceptibility locus, several of which map to transcriptional regulatory elements active in ovarian cells identified by FAIRE-seq (Formaldehyde assisted isolation of regulatory elements followed by sequencing) and ChIP-seq (Chromatin Immunoprecipitation followed by sequencing) in relevant cell types. Reporter and electrophoretic mobility shift assays (EMSA) determined the extent to which candidate SNPs had allele specific effects. Chromosome conformation capture (3C) reveals a physical association between Basonuclin 2 (BNC2) and …

High-Throughput Screening Of Age-Related Changes In Caenorhabditis Elegans, Neil Copes

USF Tampa Graduate Theses and Dissertations

This project was developed to identify novel methods for high-throughput culturing and screening of C. elegans to investigate age-related metabolic changes and to survey the proteomic and metabolomic factors associated with age-related changes. To accomplish these goals we developed a novel way to grow C. elegans in liquid culture in 96-well microplates for several weeks without suffering significant fluid loss due to evaporation and without needing to shake or unseal the plates for aeration. We also developed methods for assaying the total volume of live C. elegans in microplate cultures using a fluorescence microplate reader and for performing RNAi experiments …

The Effects Of Supplemented Metabolites On Lifespan And Stress Response Pathways In Caenorhabditis Elegans, Clare B. Edwards

USF Tampa Graduate Theses and Dissertations

Understanding how metabolites contribute to anaplerosis, antioxidant effects, and hormetic pathways during aging is fundamental to creating supplements and dietary habits that may decrease age-associated disease and decline, thus improving the quality of life in old age. In order to uncover metabolic pathways that delay aging, the effects of large sets of metabolites associated with mitochondrial function on lifespan were investigated.

Malate, the tricarboxylic acid (TCA) cycle metabolite, increased lifespan and thermotolerance in C. elegans. Addition of fumarate and succinate also extended lifespan and all three metabolites activated nuclear translocation of the cytoprotective DAF-16/FOXO transcription factor and protected from paraquat-induced …

Mmv Malaria Box Activity Screening In Dormant Plasmodium Falciparum Phenotypes, Sandra Galusic

USF Tampa Graduate Theses and Dissertations

The causative agent of malignant tertian malaria, Plasmodium falciparum undergoes an arrested growth phenotype of its erythrocytic stage when under drug-stress. Recent artemisinin treatment failures seem to be indicative of such induction followed by recrudescence rather than actual therapeutic failure. Likewise, P. vivax hypnozoites are the prototypic dormants and the latent infections for which they are responsible prove most difficult to treat. Dihydroartemisinin, an artemisinin-derivative, can be used to exploit this mechanism by inducing a dormant state in ring-stage P. falciparum parasites and in turn, their recovery may be used as a screening period for compounds that inhibit or foster …

Population Dynamics Of The Little Gulper Shark (Centrophorus Uyato) And Community Analyses Of Elasmobranch Species In The Northern Gulf Of Mexico, Jacquelin Joye Hipes

USF Tampa Graduate Theses and Dissertations

In chapter 1 I describe the population dynamics of an understudied species of gulper shark, Centrophorus uyato (common name, the Little Gulper), found in the Northern Gulf of Mexico. Sharks in the family Centrophoridae are mid-sized, demersal fish, with seven species identified in North American waters. These deepwater species can be difficult to study due to the extreme depths at which they occur. During four longlining cruises from 2012-2014, 593 sharks were landed, predominantly in the Mississippi Canyon off the Louisiana coast. Mean depth of capture was 290 m. Supplementing these data are catch records for C. uyato from a …

Comparison Of Gastropod Assemblages From Natural And Phosphate Mine Lakes Of Central Florida, William A. Mailand

USF Tampa Graduate Theses and Dissertations

Investigations were made examining the relationships between gastropod species richness and abundance across 20 phosphate and 20 natural lakes in Central Florida. In additional to lake category, age of phosphate lakes was used to determine if phosphate lakes ever approximate natural lakes. Additional physical, chemical, and biological parameters, including chlorophyll a, Ca, secchi, phosphorous, conductance, fish predation, and recreational lake use were investigated in order to determine if they affected gastropods with lake age. Comparisons were also made between gastropod species richness and average abundance and two groups of dominant vegetation categories: Panicum, a structurally complex macrophyte, and Typha …

Impacts Of Agrochemical Pollution On Aquatic Communities And Human Disease, Neal T. Halstead

USF Tampa Graduate Theses and Dissertations

The global human population is expected to exceed 9 billion individuals by 2050, putting greater strain on the natural resources needed to sustain such a population. To feed this many people, some expect agricultural production will have to double and agrochemical use will have to increase anywhere from two- to five-fold relative to the turn of the century. Although industrial agriculture has provided many benefits to society, it has caused declines in biodiversity, both directly (e.g., through conversion of habitat) and indirectly (e.g., through contamination of adjacent natural habitats). Agricultural activity has also been linked to increased prevalence and intensity …

Mind And Life: Is The Materialist Neo-Darwinian Conception Of Nature False?, Martin Zwick

Complex Systems Faculty Publications and Presentations

A partial review of Thomas Nagel's book, Mind and Cosmos: Why the Materialist NeoDarwinian Conception of Nature Is Almost Certainly False is used to articulate some systems-theoretic ideas about the challenge of understanding subjective experience. The article accepts Nagel' s view that reductionist materialism fails as an approach to this challenge, but argues that seeking an explanation of mind based on emergence is more plausible than one based on panpsychism, which Nagel favors. However, the article proposes something similar to Nagel's neutral monism by positing a hierarchy of information processes that span the domains of matter, life, and mind. As …

Explaining The "Pulse Of Protoplasm": The Search For Molecular Mechanisms Of Protoplasmic Streaming, Michael Dietrich

Dartmouth Scholarship

Explanations for protoplasmic streaming began with appeals to contraction in the eighteenth century and ended with appeals to contraction in the twentieth. During the intervening years, biologists proposed a diverse array of mechanisms for streaming motions. This paper focuses on the re-emergence of contraction among the molecular mechanisms proposed for protoplasmic streaming during the twentieth century. The revival of contraction is a result of a broader transition from colloidal chemistry to a macromolecular approach to the chemistry of proteins, the recognition of the phenomena of shuttle streaming and the pulse of protoplasm, and the influential analogy between protoplasmic streaming and …

Sewall Wright's Adaptive Landscape: Philosophical Reflections On Heuristic Value, Michael Dietrich, Robert A. Skipper Jr.

Dartmouth Scholarship

This volume brings together prominent historians of science, philosophers, ecologists, and evolutionary biologists, with the aim of discussing the state of the art of the Adaptive Landscape from several different perspectives.

Translocation And Telemetry Tracking Of Lake Sturgeon In The Menominee River, Mi / Wi, Jeremy G. Olach

Dissertations, Master's Theses and Master's Reports - Open

The Menominee River is a Michigan-Wisconsin boundary water historically traversed by lake sturgeon (Acipenser fulvescens), but now contains fragmented populations between hydroelectric dams. Though fish passage is currently being implemented on the lower dams, it is unclear whether sturgeon given access to historic spawning grounds would use them. In 2012 and 2013, a total of 15 pre-spawning sturgeon were captured, implanted with sonic transmitters and translocated upstream over two hydroelectric dams to the stretch below the historic spawning site of Sturgeon Falls. Sturgeon were then tracked via five stationary receivers from April 2012 until August 2013, and with …

Adaptive Movements And Thermoregulation In Big-Eared Bats, Cody Jordan

Electronic Theses and Dissertations

There are a variety of (non-exclusive) reasons to explain the presence of group-living, but clustering or huddling is especially important for small endotherms with high surface-area-to-volume ratios. Clustering is interesting because variations within clustering are seldom investigated despite anecdotal evidence that bat clustering varies widely. I studied a colony of Rafinesque's big-eared bats (Corynorhinus rafinesquii) to learn more about clustering behavior using infrared video. I predicted that temperature would be the primary driver of how and when bats cluster while roosting. The actual relationship was not as predicted by an energetic model. High density clusters of bats were comacross a …

Improvement Of Atropine Production By Different Biotic And Abiotic Elicitors In Hairy Root Cultures Of Datura Metel, Zahra Shakeran, Mehrnaz Keyhanfar, Gholamreza Asghari, Mustafa Ghanadian

Turkish Journal of Biology

Hairy roots induced by Agrobacterium rhizogenes are distinguished by their high growth rate, genetic stability, and lateral branching. Datura metel is an important medicinal plant whose hairy roots are used for the production of atropine, a tropane alkaloid applied as an anticholinergic and parasympathetic agent. To increase the yield of atropine, biotic (Bacillus cereus and Staphylococcus aureus) and abiotic (AgNO_3 and nanosilver) elicitors were added to the hairy root cultures of D. metel and then analyzed through high-performance liquid chromatography. All the elicitors influenced biomass accumulation and atropine production. Among the tested elicitors, nanosilver was most effective in enhancing the …

Melatonin Increased Vitamin C And Antioxidant Enzyme Values In The Plasma,Heart, Liver, And Kidney Of Adriamycin-Treated Rats, Ali̇ Zi̇ya Karakilçik, Muharrem Bi̇ti̇ren, Mustafa Zeri̇n, Haki̇m Çeli̇k, Nurten Aksoy

Turkish Journal of Biology

Adriamycin, an anticarcinogenic agent, causes excessive production of reactive oxygen species (ROS). These radicals may affect antioxidant defense systems. The present study was designed to investigate the effects of melatonin on antioxidant enzyme activities and vitamin C in Adriamycin-treated rats. In the current study, rats were divided into three groups: control, Adriamycin, and melatonin+Adriamycin groups. The control group was intraperitoneally injected physiological saline (0.9%) as a placebo. The Adriamycin and melatonin+Adriamycin groups were administered Adriamycin (25 mg/kg body weight). The melatonin+Adriamycin group was pretreated with melatonin (0.5 mg/kg body weight). Vitamin C concentration and catalase (CAT), superoxide dismutase (SOD), glutathione …

Silencing Mist1 Gene Expression Is Essential For Recovery From Acute Pancreatitis, Anju Karki, Sean E. Humphrey, Rebecca E. Steele, David A. Hess, Elizabeth J. Taparowsky, Stephen F. Konieczny

Department of Biological Sciences Faculty Publications

Acinar cells of the exocrine pancreas are tasked with synthesizing, packaging and secreting vast quantities of pro-digestive enzymes to maintain proper metabolic homeostasis for the organism. Because the synthesis of high levels of hydrolases is potentially dangerous, the pancreas is prone to acute pancreatitis (AP), a disease that targets acinar cells, leading to acinar-ductal metaplasia (ADM), inflammation and fibrosis-events that can transition into the earliest stages of pancreatic ductal adenocarcinoma. Despite a wealth of information concerning the broad phenotype associated with pancreatitis, little is understood regarding specific transcriptional regulatory networks that are susceptible to AP and the role these networks …

Limitations Of Host Plant Use In Two Andean Altinote (Nymphalidae, Heliconiinea, Acraeini), Butterflies, From A Tritrophic Perspective, Karen M. Pedersen

Browse all Theses and Dissertations

Despite the clear advantages of generalist feeding, many insect herbivores feed on a relatively small number of available host plants with in phylogenetically restricted groups. To better understand patterns of host plant use I used the sister species Altinote stratonice and Altinote dicaeus and their overlapping but distinct host plant range. I measured physiological effects of plants by using development time, pupal mass, and survival. To determine the importance of enemies I quantified rates of parasitism and rates of predation. Finally I measured host plant frequency, and host plant abundance. I found that survival of A. dicaeus and A. stratonice …

Associations Of Military Divorce With Mental, Behavioral, And Physical Health Outcomes, Lawrence Wang, Amber Seelig, Shelley Macdermid Wadsworth, Hope Mcmaster, John E. Alcaraz, Nancy F. Crum-Cianflone

Department of Human Development and Family Sciences Faculty Publications

Background

Divorce has been linked with poor physical and mental health outcomes among civilians. Given the unique stressors experienced by U.S. service members, including lengthy and/or multiple deployments, this study aimed to examine the associations of recent divorce on health and military outcomes among a cohort of U.S. service members.

Methods

Millennium Cohort participants from the first enrollment panel, married at baseline (2001–2003), and married or divorced at follow-up (2004–2006), (N = 29,314). Those divorced were compared to those who remained married for mental, behavioral, physical health, and military outcomes using logistic regression models.

Results

Compared to those who …

Effects Of Benzo[A]Pyrene And Cyp19a1b Knockdown On Zebrafish Development, Khalid M. Alharthy

Electronic Theses and Dissertations

Benzo[a]pyrene (BaP) is a ubiquitous environmental contaminant that is both an endocrine disruptor and a carcinogen. Aromatase (CYP19) is a key enzyme in steroidogenesis playing a key role in the hypothalamus-pituitary-gonad feedback loop. We hypothesized that BaP would negatively impact cyp19a1b expression in zebrafish, in turn, adversely affecting development and physiology. Here, we consider whether the toxicities observed following BaP exposure are comparable to those following a transient morpholino (MO)-mediated CYP19a1b knockdown or exposure to an aromatase inhibitor (fadrozole) during early development. One-cell zebrafish embryos were injected with a CYP19a1b-MO or control-MO. Other non-injected embryos were exposed to nominal waterborne …

Rna-Guided Crispr-Cas Technologies For Genome-Scale Investigation Of Disease Processes, Sean E. Humphrey, Andrea L. Kasinski

Department of Biological Sciences Faculty Publications

From its discovery as an adaptive bacterial and archaea immune system, the clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system has quickly been developed into a powerful and groundbreaking programmable nuclease technology for the global and precise editing of the genome in cells. This system allows for comprehensive unbiased functional studies and is already advancing the field by revealing genes that have previously unknown roles in disease processes. In this review, we examine and compare recently developed CRISPR-Cas platforms for global genome editing and examine the advancements these platforms have made in guide RNA design, guide RNA/Cas9 interaction, on-target specificity, …

On The Origin Of Protein Superfamilies And Superfolds, Abram Magner, Wojciech Szpankowski, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Distributions of protein families and folds in genomes are highly skewed, having a small number of prevalent superfamiles/superfolds and a large number of families/folds of a small size. Why are the distributions of protein families and folds skewed? Why are there only a limited number of protein families? Here, we employ an information theoretic approach to investigate the protein sequence-structure relationship that leads to the skewed distributions. We consider that protein sequences and folds constitute an information theoretic channel and computed the most efficient distribution of sequences that code all protein folds. The identified distributions of sequences and folds are …

Expression And Misexpression Of The Mir-183 Family In The Developing Hearing Organ Of The Chicken, Kaidi D. Zhang, Michelle L. Stoller, Donna M. Fekete

Department of Biological Sciences Faculty Publications

The miR-183 family consists of 3 related microRNAs (miR-183, miR-96, miR-182) that are required to complete maturation of primary sensory cells in the mammalian inner ear. Because the level of these microRNAs is not uniform across hair cell subtypes in the murine cochlea, the question arises as to whether hair cell phenotypes are influenced by microRNA expression levels. To address this, we used the chicken embryo to study expression and misexpression of this gene family. By in situ hybridization, expression of all 3 microRNAs is robust in immature hair cells of both auditory and vestibular organs and is present in …

Drosophila Cyclin J And The Somatic Pirna Pathway Cooperate To Regulate Germline Stem Cells, Paul Michael Albosta

Wayne State University Dissertations

Cyclin J (CycJ) is a highly conserved cyclin that is uniquely expressed specifically in ovaries in Drosophila. Deletion of the genomic region containing CycJ and adjacent genes resulted in a genetic interaction with neighboring piRNA pathway gene, armitage (armi). Here I assessed oogenesis in CycJ null in the presence or absence of mutations in armi or other piRNA pathway genes. Although CycJ null flies had decreased egg laying and hatching rates, ovaries appeared normal indicating that CycJ is dispensable for oogenesis under normal conditions. Further double mutant analysis of CycJ and neighbor armi, as well as two other piRNA pathway …

Analyzing The Interactions Of Kdm5/Lid And Sin3 In Drosophila Melanogaster, Ambikai Gajan

Wayne State University Dissertations

SIN3, the scaffold protein of a histone modifying complex is conserved from yeast to mammals. Drosophila SIN3 associates with both a histone deactylase RPD3 and a histone demethylase dKDM5/LID. Immunopurification of dKDM5/LID verifies a previously observed interaction with SIN3 and RPD3. Furthermore, deficiency of dKDM5/LID phenocopies deficiency of SIN3 in many cellular and developmental processes. Knockdown of both Sin3A and lid hinder cell proliferation in Drosophila cultured cells and developing flies. Knockdown of these genes also results in a curved wing phenotype implicating a role in wing development. Analysis of underlying gene expression changes upon decreased expression of SIN3, dKDM5/LID …