Biology Commons^™

East Coast Salt Marsh Response To Sea Level Rise: Microbial Community Function And Structure, Matt R. Simon

All Theses And Dissertations

Coastal salt marshes are under stress from anthropogenic climate change-induced sea level rise (SLR). Sediment microbial decomposition is a major driver of marsh subsidence and any impact of SLR on this biotic process would have a direct effect on marsh surface elevation relative to sea level. Furthermore, sensitivity to SLR of microbial community composition may play a role in the functional response. I collected sediment from six coastal marshes on the United States Atlantic East coast, exposed it to simulated sea level rise and measured total respired carbon over a three week period. My results indicated that SLR caused a …

The Two-Phase Arterial Blood Flow With Or Without A Catheter And In The Presence Of A Single Or Multi Stenosis, Ani E. Garcia, Daniel N. Riahi

Applications and Applied Mathematics: An International Journal (AAM)

We consider the problem of blood flow in an artery with or without a catheter and in the presence of single or multi stenosis whose shape is based on the available experimental data for the stenosis in a human’s artery. The presence of stenosis in the artery, which locally narrows portion of the artery, can be a result of fatty materials such as cholesterol in the blood. The use of catheter is important as a standard tool for diagnosis and treatment in patience whose blood flow passage in the artery is affected adversely by the presence of the stenosis within …

Spread Of Malicious Objects In Computer Network: A Fuzzy Approach, Bimal K. Mishra, Apeksha Prajapati

Applications and Applied Mathematics: An International Journal (AAM)

We propose an e-epidemic fuzzy SEIQRS (Susceptible-Exposed-Infectious-Quarantine- Recovered-Susceptible) model for the transmission of malicious codes in a computer network. We have simulated the result for various parameters and analyzed the stability of the model. The efficiency of antivirus software and crashing of the nodes due to attack of malicious code is analyzed. Furthermore, initial simulation results illustrate the behavior of different classes for minimizing the infection in a computer network. It also reflects the positive impact of anti-virus software on malicious code propagation in a computer network. The basic reproduction number R0 f and its formulation is also discussed.

Numerical Solution Of Fuzzy Arbitrary Order Predator-Prey Equations, Smita Tapaswini, S. Chakraverty

Applications and Applied Mathematics: An International Journal (AAM)

This paper seeks to investigate the numerical solution of fuzzy arbitrary order predator-prey equations using the Homotopy Perturbation Method (HPM). Fuzziness in the initial conditions is taken to mean convex normalised fuzzy sets viz. triangular fuzzy number. Comparisons are made between crisp solution given by others and fuzzy solution in special cases. The results obtained are depicted in plots and tables to demonstrate the efficacy and powerfulness of the methodology.

Grayscale-Image Encryption Using Random Hill Cipher Over Sln(F) Associated With Discrete Wavelet Transformation, D. C. Mishra, R. K. R. K. Sharma

Applications and Applied Mathematics: An International Journal (AAM)

Image data are highly sensitive and prone to incidental decoding by intruders. The security of image data in an insecure network is therefore a major issue. In this paper, we have presented a novel approach for grayscale-image encryption and decryption using Random Hill cipher over SLn(F) associated with discrete wavelet transformation. Earlier techniques for encryption and decryption of image data discussed missing the keys, but in this approach, both the keys and the arrangement of RHC are emphasized. Additionally, keys multiplication side (pre or post) over a grayscale-image data matrix also inevitable to know, to correctly decrypt the encrypted image …

Neanderthal Hand And Foot Remains From Moula-Guercy, Ardèche, France, Ben Mersey, Rebecca S. Jabbour, Kyle Brudvik, Alban Defleur

School of Science Faculty Works

The hand and foot remains from Moula-Guercy cave (Ardèche, France) comprise 24 specimens of Eemian age (ca. 120 ka). The specimens include primarily complete elements, which are rare among the Moula-Guercy postcrania. The hand remains have several characteristic Neanderthal traits including a laterally facing (parasagittally oriented) second metacarpal-capitate articulation, a short styloid process, a wide proximal articular surface on the third metacarpal, and absolutely expanded apical tuberosities on the distal hand phalanges relative to modern humans. The foot remains include several incomplete elements along with an antimeric pair of naviculars, a medial cuneiform and cuboid, and a single complete element …

Connecting The Dots: Understanding Migration In The Context Of Other Periods Of The Annual Cycle, Kristina Lee Paxton

Dissertations

Migration is a fundamental characteristic of the life history of many organisms. Large-scale seasonal movements expose migratory species to an array of differing environmental conditions such that the ecology, behavior, and life history strategies of migratory species must balance selection pressures associated with each phase of the annual cycle. Therefore, scientists increasingly realize that to understand the ecology of a migratory species in any one phase of the annual cycle requires an understanding of how other phases may interact with and influence the period of interest. That said, following individuals throughout the year poses a serious challenge.

The focus of …

Assessing Growth Response To Climate Controls In A Great Basin Artemisia Tridentata Plant Community, Lorenzo F. Apodaca

UNLV Theses, Dissertations, Professional Papers, and Capstones

An assessment of the growth response of key vegetative species to climatic variability is vital to identifying possible local impacts on ecosystems faced with imminent climate change. With current climate projections in Nevada predicting a shift to an even more arid climate with greater year-to-year variability, the imperative exists to identify the effects of specific climatic controls on plant growth and to research methods to assess large-scale vegetative changes, especially in more remote areas where readily available data sets may be lacking. This study utilized annual growth ring indices constructed from big sagebrush (Artemisia tridentatassp.tridentata) stems collected in Spring Valley, …

La Diversidad De Los Análisis De Diversidad La Diversidad De Los Analisis De Diversidad [The Diversity Of Diversity Analyses], Victor D. Carmona-Galindo, Tizziana V. Carmona

Biology Faculty Works

There is a lack of consistency with respect to the use of the terms like species richness, diversity and biodiversity, which extends to the analysis of diversity indices and the merit of using diversity indices in the evaluation (comparison and contrast) of biological communities. The purpose of this article is to provide working definitions for these terms and cite examples from the primary literature that demonstrate the utility of estimating richness, evaluating proportional abundance patterns, as well as comparing indices of diversity and similarity to study patterns of biological organization at different ecological scales. Additionally, we provide a manual in …

The Staphylococcus Pseudintermedius Adhesin Spsd Contains A Central Fibronectin-Binding Domain, Andrea S. Bordt

Dissertations and Theses (Open Access)

Staphylococcus pseudintermedius is a Gram-positive bacterium significant because of its ability to cause costly and difficult to treat veterinary infections worldwide. It exhibits several similarities to Staphylococcus aureus, however, very little is known about its surface adhesins. Surface adhesins in S. aureus are significant contributors to pathogenesis. S. pseudintermedius encodes the surface protein SpsD, which contains characteristics of the microbial surface components recognizing adhesive matrix molecules family and confers attachment of the heterologous host Lactococcus lactis to fibronectin. This work has identified a centrally-located fibronectin binding domain in SpsD which binds the 30 kDa N-terminal domain of fibronectin with …

Investigation Of The Life History And Lipid Content Consequences Of Reduced Abundance Of Delta-9 Desaturases In Drosophila Melanogaster, Li Ko

School of Biological Sciences: Dissertations, Theses, and Student Research

Monounsaturated fatty acids (MUFAs) are essential components in all organisms, and the key enzymes that catalyze the production of MUFA are delta-9 desaturases. These enzymes are ER bound and introduce the first double bonds in saturated fatty acids. To investigate the role that delta-9 desaturases play in Drosophila life history and development we performed a series of studies using the RNAi method. Longevity results showed die-off peaks of the knocked-down (KD) flies at day 45. Fecundity study showed decreases in both egg productions and viability of these eggs. Development difficulties were observed in both regular diet and low fat diet. …

The Roles Of Phenotypic Plasticity And Genotypic Specialization In High Altitude Adaptation, Danielle M. Tufts

School of Biological Sciences: Dissertations, Theses, and Student Research

In vertebrates living at high altitude, arterial hypoxemia may be ameliorated by reversible changes in the oxygen-carrying capacity of the blood (regulated by erythropoiesis) and/or changes in blood–oxygen affinity (regulated by allosteric effectors of hemoglobin function). These hematological traits often differ between taxa that are native to different elevational zones, but it is often unknown whether the observed physiological differences reflect fixed, genetically based differences or environmentally induced acclimatization responses (phenotypic plasticity). Here, we report measurements of hematological traits related to blood–O₂ transport in populations of deer mice (Peromyscus maniculatus) that are native to high- and low-altitude …

Development Of In Vitro Chylomicron Assay Using Caco-2 Cells, Yuxi Sun

Electronic Theses and Dissertations

Dietary fats are mainly transported by the intestine in lipoproteins: chylomicrons (CMs) and very low density lipoproteins (VLDLs). Unfortunately, studies of the intestinal absorption of dietary fat have been hampered by the lack of an adequate in vitro model system. As an in vitro model Caco-2 cells are able to secrete lipoproteins. We investigated the possible factors that may affect the secretion of CMs through the ultracentrifugation technique. The dose-dependent effects of oleic acid, mono-olein, egg lecithin, collagen matrix, and the effect of cell differentiation on CM secretion were then tested. We found that oleic acid, lecithin, and cell differentiation …

Investigating Potential Bioactive Compounds From Rhodococcus And Their Effects On Mcf7 Breast Cancer Cells, Megan N. Crabtree

Electronic Theses and Dissertations

Many drugs used in the treatment of various cancers are derived from or influenced by compounds from nature. The soil bacterium Rhodococcus is of interest because of its identified secondary metabolic pathways and the production of novel natural antibiotics from several strains. In this study, a solid agar extraction method was used to collect compounds from strains of Rhodococcus. These bacterial compound extracts were then tested using a MTT assay in order to evaluate their effectiveness in augmenting MCF7 breast cancer cell death. The results of two way ANOVA analyses revealed 18 compound extracts from 15 strains of Rhodococcus that …

Determining Parentage And The Effects Of Relatedness On Play Partner Preference In Belding's Ground Squirrels, Jessica Weidenbach

Master's Theses

I investigated 1) multiple paternity in Belding’s ground squirrels (Urocitellus beldingi) and 2) social partner preferences in juvenile U. beldingi. Prior work with blood allozymes demonstrated multiple paternity in U. beldingi litters. I evaluated paternity using microsatellite DNA analysis, which is more accurate than examining blood allozymes. My results indicate that multiple paternity in U. beldingi is more extensive than previously shown, occurring in about 90% of litters with more than one juvenile, and averaging 2.95 fathers in multiply sired litters. I also evaluated the hypothesis that play and other social behavior promotes bonding among juvenile female …

Distribution And Abundance Of Anopheles Spp. In The Lower Rio Grande Valley, South Texas, Norma Hermelinda Martinez

Theses and Dissertations - UTB/UTPA

This study investigated the relationship between Anopheles abundance, collection sites and environmental variables in the Lower Rio Grande Valley, South Texas. In addition, species composition in the Lower Rio Grande Valley was determined in 2011. A total of 6772 female mosquitoes were identified to six genera and 27 species. The most prevalent genera collected were Culex (53.9%), Ochlerotatus (25.6%) and Aedes (13.6%). Anopheles mosquitoes were collected using resting boxes during summer 2012 at multiple locations along the Lower Rio Grande Valley. ArcGIS was used to identify land cover characteristics and nearest water sources at mosquito collection sites. Estero Llano Grande …

A Survey Of Heavy Metals In Water, Soil And The Surrounding Plants In The Lower Rio Grande Valley, Erving W. Morelius

Theses and Dissertations - UTB/UTPA

Heavy metal pollution of the environment in recent years has become a major issue of importance for both human and environmental health. Samples were investigated for the potential pollution of the area as it is a vital produce producing area. During the study plant, soil and water samples were collected from the Donna Reservoir and Canal System to test the concentration of various heavy metals. The heavy metals tested included both potentially toxic and micronutrients in the samples which included arsenic, cadmium, chromium, copper, iron, lead, nickel and sulfur. During the study, a sixty day sampling period was used to …

Climate Change And Metapopulation Implications For Species Re/Introductions: A Spatial Analysis Of Suitable Habitat For The American Marten (Martes Americana) In Northern Michigan, Joshua Michael Green

Masters Theses

The American marten (Martes americana), which was extirpated from Michigan by 1939 due to logging and trapping, has cultural significance as a clan animal to Great Lakes Native American Tribes and ecological significance as a forest health indicator. Sleeping Bear Dunes National Lakeshore (SBD) is considering reintroduction, but several factors must first be considered in assessing the habitat suitability. The goals of this study were to 1) enhance an existing habitat suitability model by including additional relevant variables, 2) conduct a spatial analysis of the habitat within the study area using a metapopulation perspective and 3) incorporate climate …

Microfluidic Generated Egf-Gradients Induce Chemokinesis Of Transplantable Retinal Progenitor Cells Via The Jak/Stat And Pi3kinase Signaling Pathways, Uchenna J. Unachukwu, Moira Sauane, Maribel Vazquez, Stephen Redenti

Publications and Research

A growing number of studies are evaluating retinal progenitor cell (RPC) transplantation as an approach to repair retinal degeneration and restore visual function. To advance cell-replacement strategies for a practical retinal therapy, it is important to define the molecular and biochemical mechanisms guiding RPC motility. We have analyzed RPC expression of the epidermal growth factor receptor (EGFR) and evaluated whether exposure to epidermal growth factor (EGF) can coordinate motogenic activity in vitro. Using Boyden chamber analysis as an initial highthroughput screen, we determined that RPC motility was optimally stimulated by EGF concentrations in the range of 20-400ng/ml, with decreased stimulation …

Mechanisms For Regulation Of Plant Kinesins, Anindya Ganguly, Ram Dixit

Biology Faculty Research

Throughout the eukaryotic world, kinesins serve as molecular motors for the directional transport of cellular cargo along microtubule tracks. Plants contain a large number of kinesins that have conserved as well as specialized functions. These functions depend on mechanisms that regulate when, where and what kinesins transport. In this review, we highlight recent studies that have revealed conserved modes of regulation between plant kinesins and their non-photosynthetic counterparts. These findings lay the groundwork for understanding how plant kinesins are differentially engaged in various cellular processes that underlie plant growth and development.

Phenotypic Correlates Of The Lianescent Growth Form: A Review, Tomasz P. Wyka, Jacek Oleksyn, Piotr Karolewski, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Background

As proposed by Darwin, climbers have been assumed to allocate a smaller fraction of biomass to support organs in comparison with self-supporting plants. They have also been hypothesized to possess a set of traits associated with fast growth, resource uptake and high productivity.

Scope

In this review, these hypotheses are evaluated by assembling and synthesizing published and unpublished data sets from across the globe concerning resource allocation, growth rates and traits of leaves, stems and roots of climbers and self-supporting species.

Conclusions

The majority of studies offer little support for the smaller allocation of biomass to stems or greater …

Abundance And Size Of Sand Crabs, Lepidopa Benedicti (Decapoda: Albuneidae), In Southern Texas, Jessica H. Murph, Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Albuneid sand crabs are found in sandy beaches around the world, but little is known about the basic biology of any species in the family. We sampled sand crabs, Lepidopa benedicti, for 2 years at South Padre Island, Texas, at two locations: one developed site near the town, where recreational use is high and one undeveloped site away from the town, where recreational use is lower. We hypothesized that sand crabs would be less abundant and smaller at the developed site than at the undeveloped one. Densities were highest in summer and lowest in winter but did not differ between …

Greater Sage-Grouse (Centrocercus Urophasianus) Habitat Selection In Northwestern Wyoming And Stable Isotope Analysis Of Fecal Material, Andrea Renee Green

Graduate Theses and Dissertations

Dramatic range-wide declines in Greater Sage-Grouse populations have prompted efforts to determine habitat characteristics that are selected by sage-grouse for foraging, nesting and brood-rearing areas in an effort to conserve this species. Managers at Heart Mountain and Y U Bench in northwestern Wyoming expressed the need to quantify various habitat characteristics and to determine key use areas at both study sites. Data were collected on a variety of habitat variables in spots selected by grouse for foraging, nesting, and brood-rearing activities. These variables were compared to the same variables measured at random points at both study sites. Significant differences existed …

Crystallization Of The Chap Domain Of The Endolysin From Staphylococcus Aureus Bacteriophage K, Marta Sanz-Gaitero, Ruth Keary, Carmela Garcia-Doval, Aidan Coffey, Mark J. Van Raaij

Department of Biological Sciences Publications

CHAPK is the N-terminal cysteine, histidine-dependent amidohydrolase/peptidase domain (CHAP domain) of the Staphylococcus aureus bacteriophage K endolysin LysK. It is formed from the first 165 residues of LysK and functions by cleaving specific peptidoglycan peptide bonds, causing bacterial lysis. CHAPK can lyse S. aureus when applied exogenously, making it a good candidate for the treatment of multidrug-resistant Staphylococcus aureus infections. Here, the crystallization of CHAPK and the collection of native and derivative data to high resolution, which allowed structure solution, are reported. The structure may help to elucidate the mechanism of action and in the design of chimeric proteins or …

Comparative Genome Analysis Of Ciprofloxacin-Resistant Pseudomonas Aeruginosa Reveals Genes Within Newly Identified High Variability Regions Associated With Drug Resistance Development, Hsun-Cheng Su, Jainab Khatun, Dona M. Kanavy, Morgan C. Giddings

Biology Faculty Publications and Presentations

The alarming rise of ciprofloxacin-resistant Pseudomonas aeruginosa has been reported in several clinical studies. Though the mutation of resistance genes and their role in drug resistance has been researched, the process by which the bacterium acquires high-level resistance is still not well understood. How does the genomic evolution of P. aeruginosa affect resistance development? Could the exposure of antibiotics to the bacteria enrich genomic variants that lead to the development of resistance, and if so, how are these variants distributed through the genome? To answer these questions, we performed 454 pyrosequencing and a whole genome analysis both before and after …

Conservation In The Context Of Climate Change: Practical Guidelines For Land Protection At Local Scales, Kevin Ruddock, Peter V. August, Christopher Damon, Charles Labash, Pamela Rubinoff, Donald Robadue Jr.

Natural Resources Science Faculty Publications

Climate change will affect the composition of plant and animal communities in many habitats and geographic settings. This presents a dilemma for conservation programs – will the portfolio of protected lands we now have achieve a goal of conserving biodiversity in the future when the ecological communities occurring within them change? Climate change will significantly alter many plant communities, but the geophysical underpinnings of these landscapes, such as landform, elevation, soil, and geological properties, will largely remain the same. Studies show that extant landscapes with a diversity of geophysical characteristics support diverse plant and animal communities. Therefore, geophysically diverse landscapes …

Biocurious, Sara Gevurtz

SWITCH

This article describes bioart, its emergence in the early 2000s, and the growing accessibility of open source labs such as BioCurious.

Growth Pattern, Allison Kudlah

SWITCH

"Growth Pattern" is an installation that merges botanical tissue culture with ornamental design. In this installation, tobacco leaves are die-cut into patterns and cultured in petri dishes, where new leaf growth develops over time.

Project Burg, 2010, San José State University, Danielle Siembieda-Gribben

SWITCH

“PROJECT BURG,” installed at San José State University, anthropomorphizes a building by connecting energy systems such as cold water and electricity with human systems like the respiratory system. The installation invites viewers to understand their building’s needs and rethink how we care for our built environments.

Biohacking, Sara Gevurtz

SWITCH

This article explores the rise of DIY biohacking spaces and the author’s experience at BioCurious, a Silicon Valley based hackerspace