Biology Commons^™

Water-Use Strategies Of Japanese Knotweed (Fallopia Japonica), Lisa Nicole Cummins

Theses, Dissertations and Culminating Projects

Japanese knotweed, Fallopia japónica, is an herbaceous perennial that is invasive on many continents, including North America. Stands of Japanese knotweed are often located in riparian regions, disturbed sites, and along roadways. Recent studies have evaluated the impact of Japanese knotweed on the hydrologic cycle. Japanese knotweed may have the ability to markedly decrease stream discharge, potentially because of its high LAI. In the summer of 2010, a two-part study was conducted to determine the impact of water availability on the physiology and morphology of Japanese knotweed. A greenhouse study of Japanese knotweed measured transpiration and other factors that may …

Evolution And Expression Of The Lysozyme And Beta1,4-Galactosyltransferase Families In Mammals : Possible Roles In Fertilization, Jason Michael Biegel

Legacy Theses & Dissertations (2009 - 2024)

Understanding the specificity of sperm-egg recognition during mammalian fertilization has been a topic of intense study for many years, and yet the biochemical basis for this process is still largely unknown. Mammalian eggs are covered by thick glycoprotein coats, called zona pellucida (ZP), which contain glycans of varying structures that must be specifically recognized, and presumably cleaved, for fertilization to occur. Various experiments have implicated B1,4-galactosyltransferase 1 (B4GalT1) in the ability of mouse sperm to bind the ZP. Here I present evidence that additional members of the B4GalT family (specifically B4GalT3 and B4GalT4) are present on mouse and rat sperm, …

The Consumption Of Mechanically Resistant Foods By Anthropoid Primates And Its Influence On Cranial Integration And Variation, Jana Makedonska

Legacy Theses & Dissertations (2009 - 2024)

ABSTRACT

Neutralizing Antibodies Against The Ricin Toxin Binding Subunit (Rtb), Anastasiya Yermakova

Legacy Theses & Dissertations (2009 - 2024)

Ricin is a toxin that is naturally produced by the seeds of the castor bean plant Ricinus communis, and is part of a family of A-B toxins that includes Shiga, cholera, and anthrax toxins. The toxin consists of two subunits, RTA and RTB, which are linked by a disulfide bond. RTA is an RNA N-glycosidase that selectively targets and inactivates 28S ribosomal RNA, thereby arresting protein synthesis and leading to cell death. RTB is a galactose/ N-acetylgalactosamine-specific lectin that mediates attachment, entry, and intracellular trafficking of ricin in host cells. Currently, there is no approved vaccine or therapeutics available against …

Y-Family Dna Polymerases : Mechanism Of Single-Base Deletion And Effect Of Pcna Interaction, Yifeng Wu

Legacy Theses & Dissertations (2009 - 2024)

Translesional synthesis (TLS) by specialized Y-family DNA polymerases is a DNA damage tolerance pathway to bypass DNA lesions that have not been repaired by other DNA repair mechanisms. Despite their valuable lesion bypass ability, the Y-family DNA polymerases display a much lower fidelity upon replicating undamaged DNA. Their activity therefore needs to be well regulated in the cell. In our first project, we examined how an archaeal Y-family DNA polymerase, Dpo4, makes single-base deletions during replication. Dpo4 belongs to the DinB subfamily which is known to make single-base deletions. Although previous studies suggested that it uses a dNTP-stabilized misalignment mechanism, …

Characterizing The Effects Of Glutaraldehyde On The Ryanodine Receptor Calcium Release Channel, Joshua Dov Strauss

Legacy Theses & Dissertations (2009 - 2024)

Ryanodine receptors (RyR) are large intracellular calcium release channels, which

Post-Translational Modification Regulates Heterogeneous Nuclear Ribonucleoprotein K Function During Axon Outgrowth In Xenopus Laevis, Erica J. Hutchins

Legacy Theses & Dissertations (2009 - 2024)

The RNA-binding protein, heterogeneous nuclear ribonucleoprotein K (hnRNP K), is required for axon outgrowth. Its suppression in Xenopus embryos causes defects in the translation of mRNAs of multiple cytoskeletal genes. Studies in cell lines have established that hnRNP K shuttles between the nucleus and the cytoplasm to bind and regulate the fates of its target RNAs, from splicing to export and translation. At each step, hnRNP K is regulated through post-translational modifications that alter its nucleic acid and protein interactions, and subcellular localization. Precisely how this happens in developing neurons to coordinate cytoskeletal gene expression with the extracellular signals directing …

The Localized Manipulation Of The Extracellular Matrix Within 3d Collagen Cell Cultures Using A Biomems Device, Ashley N. Clark

Legacy Theses & Dissertations (2009 - 2024)

Approximately 90% of all cancer related deaths can be attributed to the occurrence of metastasis. There are multiple changes that occur within the tumor microenvironment that have been correlated with the onset of metastasis. Different cell types, extracellular matrices, blood vessels, and soluble factors are some of the various components that make up the complex, heterogeneous microenvironment that exists within a tumor. The dynamic relationship between tumor cells and their surrounding environment makes it an ideal environment to study triggers of metastasis, such as the modification of the extracellular matrix. Changes in the multiple aspects of extracellular matrix composition have …

Phage Life History Traits : Regulation Of Pseudomonas Aeruginosa And Evolution Of Phage Resistance Within The Drosophila Melanogaster Host Environment, Heather Lindberg

Legacy Theses & Dissertations (2009 - 2024)

Due to the increase in antibiotic resistant bacteria, there has been renewed interest in using bacteriophage to treat bacterial infections (phage therapy). This body of work examined different aspects related to the interaction between bacteria and phage within a host using the system of Drosophila melanogaster infected with Pseudomonas aeruginosa, which is then treated with lytic bacteriophage. Using this system four specific areas were addressed: I) How in vitro phage life history traits may be predictive of in vivo therapeutic efficacy, II) How the in vivo phage/bacteria dynamics differ for two different phages throughout the course of infection, III) How …

Modeling The Ecological Niche Of The Nigeria-Cameroon Chimpanzee Under Climate Change, Paul Ryan Sesink Clee

Legacy Theses & Dissertations (2009 - 2024)

Ecological niche theory states that a set of environmental conditions exists that a species relies upon in order to survive and reproduce. Collectively, these variables define a species' niche, which includes a species' dispersal abilities and its range. Ecological niche modeling predicts the distributions of species by using information from environmental variables across geographic space, making it a valuable tool for studying how environment affects population dynamics. With accurate species presence data and geospatial information that describe its known habitat, ENMs can effectively map a species' realized niche across geographical space, and for closely related taxa, be used to understand …

Seawater Flow Into The Digestive System Of Actinotroch Larvae (Phoronida), William Jaeckle

Scholarship

Actinotroch larva (Phoronida) concentrate and collect food particles during their planktonic existance. Reported mechanisms of particle capture include both ciliary reversal and direct interception along the larval tentacles, and suction of particle-containing seawater into the larval vestibule. These diverse mechanisms explain collection of particles, but not subsequent ingestion. Particle delivery into the digestive system is accomplished, at least in part, by the activity of the esophageal cilia. If and how the beat frequency of esophageal cilia is modified by the presence or absence of particulate or dissolved organic materials remains unknown for actinotroch larvae.

Parsimony And Model-Based Analyses Of Indels In Avian Nuclear Genes Reveal Congruent And Incongruent Phylogenetic Signals, Tamaki Yuri, Rebecca T. Kimball, John Harshman, Rauri C.K. Bowie, Michael J. Braun, Jena L. Chojnowski, Kin-Lan Han, Shannon J. Hackett, Christopher J. Huddleston, William S. Moore, Sushma Reddy, Frederick H. Sheldon, David W. Steadman, Christopher C. Witt, Edward L. Braun

Natural Sciences Faculty Publications

Insertion/deletion (indel) mutations, which are represented by gaps in multiple sequence alignments, have been used to examine phylogenetic hypotheses for some time. However, most analyses combine gap data with the nucleotide sequences in which they are embedded, probably because most phylogenetic datasets include few gap characters. Here, we report analyses of 12,030 gap characters from an alignment of avian nuclear genes using maximum parsimony (MP) and a simple maximum likelihood (ML) framework. Both trees were similar, and they exhibited almost all of the strongly supported relationships in the nucleotide tree, although neither gap tree supported many relationships that have proven …

Range Maps For Nebraska's Threatened And Endangered Species, Nebraska Natural Heritage Program

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

This document includes maps and associated information on the ranges of Nebraska’s federal and state-listed species. The information is current as of January 2013. The information is updated as needed. Contact the Nebraska Game and Parks Commission to determine if a more current version is available. The species treated are as follows: American Burying Beetle (Nicrophorus americanus), Salt Creek Tiger Beetle (Cicindela nevadica lincolniana), Swift Fox (Vulpes velox), River Otter (Lutra canadensis), Southern Flying Squirrel (Glaucomys volans), Pallid Sturgeon (Scaphirhyncus albus), Topeka Shiner (Notropis topeka), Sturgeon Chub (Macrhybopsis gelida), Blacknose Shiner (Notropis heterolepis), Lake Sturgeon (Acipenser fulvescens), Northern Redbelly Dace …

Male Reproductive Strategies And Mating Displays In The Ocellated Turkey (Meleagris Ocellata), Edward Merrill Hanlon

Electronic Theses and Dissertations

Animal mating systems are often characterized by intense competition for mates and resources. Despite how comthis conflict is, mating systems exist in which some adult males of breeding age seem to not participate. These apathetic males may be exhibiting alternative reproductive strategies, or simply delaying maturation to conserve resources for future breeding attempts. In populations of the poorly studied, near-threatened Ocellated Turkey (Meleagris ocellata), males have been reported to be either "breeding" or "non-breeding," apparently irrespective of age, although empirical data are scarce. This thesis has three main objectives for establishing a better understanding of the Ocellated Turkey's mating system. …

Aaron Gillette , Eugenics And The Nature Nurture Debate In The Twentieth Century, Garland E. Allen

Biology Faculty Research

Aaron Gillette, Eugenics and the Nature–Nurture Debate in the Twentieth Century, Palgrave Studies in the History of Science and Technology [2007], digital reprint (New York, NY: Palgrave Macmillan, 2010), pp. ix, 239, index, £18.99, paperback, ISBN: 9780230108455. This book treats an important subject – the history of the nature–nurture debate (focused on the US but with references to European players and movements) – and its implications for current theories of evolutionary psychology.

Assessment Of Seagrass Floral Community Structure From Two Caribbean Marine Protected Areas, Paul Bologna, Anthony John Suleski

Department of Biology Faculty Scholarship and Creative Works

Seagrass communities represent spatially complex and biomass producing systems comprised of intermixed seagrass and algal species. We investigated shallow water communities from two Marine Protected Areas (MPAs) in the Caribbean: St. John, United States Virgin Islands and Cayos Cochinos, Honduras. St. John sites (4) lie within the Virgin Islands National Park and the Coral Reef National Monument and are designated within an UNESCO Biosphere Reserve. Honduran sites (4) lie within the designated Marine National Monument. Our results indicate that both MPAs were dominated by Thalassia testudinum with spatial coverage and shoot density significantly greater in Honduras. Many sites also showed …

Role Of Phosphoylation Of The Mycobacterium Tuberculosis Proteasome In Oxidative Stress Response And Regulation Of Homoserine Kinase (Thrb) In Corynebacterium Glutamicum, Heather Baun

Wayne State University Theses

Part 1:

One-third of the world's population is infected with the latent form of Mycobacterium tuberculosis. M. tuberculosis must be able to control this latent even in response to nitrosative and oxidative stress conferred by the host. It is not well known how M. tuberculosis controls this state.

One possibility for this control is through its eleven eukaryotic-like serine/threonine protein kinases. Our lab has focused research on two eukaryotic-like ser/thr protein kinases, PknA and PknB. It has been found that PknA expression may affect the stability or the assembly of the proteasome complex, which is essential for M. tuberculosis to …

Defining The Mechanism Of Enhanced Cellular Invasion Induced By Mechanical Stimulation, Snehal Sunil Ozarkar

Wayne State University Theses

Metastasis is a multistep process driven by various biochemical and mechanical factors, which eventually leads to formation of secondary tumors. The tumor mass is surrounded by basement membrane (BM) and stroma made of various extracellular matrix (ECM) proteins. During metastasis tumor cells disseminate from the primary tumor, breach the BM, invade the stroma, travel through blood and lymph and colonize tissues distant from the primary tumor. Formation of secondary tumors by metastasis is a leading cause of death in cancer patients. Even though plenty of research has been focused on biochemical factors affecting metastasis, information on role of mechanical factors …

Characterizing Cyclin J By Identifying Conserved Protein-Protein Interactions, Phillip Jacob Selman

Wayne State University Theses

Cyclins are proteins that bind to Cyclin-dependent kinases, or Cdks, through a conserved domain called the Cyclin Box. Many Cyclins regulate the cell cycle. A few Cyclins impact cellular processes outside of the cell cycle. Also, a few Cyclins have poorly understood functions.

Cyclin J is a member of the Cyclin superfamily of proteins. Cyclin J is conserved among all metazoans, but is presently not well understood. All the research done on Cyclin J has been done in Drosophila.

Its mRNA is present in the early embryo, then disappears, only to reappear in adult females. When probing protein extracts with …

Regulation Of Nuclear Localization Of The Sole Sumo-Conjugating Enzyme, Ubc9, Palak Sekhri

Wayne State University Theses

The covalent and reversible conjugation of small ubiquitin-like modifier (SUMO) proteins to hundreds of different cellular proteins is catalyzed by a cascade of enzymes including an E1-activating enzyme (SAE1/SAE2), an E2-conjugating enzyme (Ubc9) and multiple E3 ligases. As the only E2 enzyme for SUMO-conjugation, Ubc9 localizes mainly in the nucleus and plays an essential role in regulation of many cellular processes including cell cycle progression through mitosis, cell migration, genome stability, stress response, transcription, and nuclear transport in eukaryotic cells. It is hypothesized that the nuclear localization of Ubc9 is required for efficient sumoylation inside the nucleus because both the …

Cystic Fibrosis, Monica Rahman

A with Honors Projects

Presentation describes Cystic Fibrosis with special attention to nutrition.

The Effect Of Thymidylate Synthase Inhibitors On Bone Marrow Derived Cells In The Intestinal Tumor Microenvironment, Grishma Acharya

Theses and Dissertations

Tumors have come to be known as independently functioning complex organs consisting of cancer cells coexisting with a heterogeneous mixture of host-derived non-neoplastic cells that form the tumor stroma. Tumor survival, progression, and metastasis depend on multiple close interactions between the cancer cells and the tumor stromal cells. These tumor stromal cells are mainly bone marrow derived cells (BMDCs) that are recruited to the primary tumor and sites of metastasis by a variety of signals secreted by the cancer cells. Because of the close interaction between the tumor and the tumor stroma, we propose that tumor stromal cells play an …

Quantifying The Effects Of Antibiotics Upon Benthic Diatoms And Marine Benthic Algal Communities, Isaac M. Hagenbuch

Theses and Dissertations

Antibiotics are a cornerstone of modern medicine. Their ability to impair prokaryotic metabolism has saved the lives of many millions of humans in the decades since wide antibiotic usage began. Antibiotic compounds are also widely used in the husbandry of animals that are used for food but, unfortunately, much of the antibiotic mass that goes into humans and animals is excreted unchanged. Those excretions go, directly or indirectly, into aquatic ecosystems. The discovery of this fact has led to a growing global concern about the fate of antibiotics in the environment. This concern is driven by no fewer than three …

Plant-Pathogen Interactions Associated With Wasting Disease In The Tropical Seagrass Thalassia Testudinum., Kyle Loucks

UNF Graduate Theses and Dissertations

Lipopolysaccharide (LPS) was shown to serve as a strong elicitor of the early defense response in the subtropical seagrass Thalassia testudinum Banks ex König and was capable of inducing an oxidative burst identified at the single cell level. The formation of reactive oxygen species (ROS) included a diphenylene iodonium sensitive response, suggesting the involvement of an NADPH oxidase. A 900 bp fragment of this enzyme was sequenced and found to encode a NAD binding pocket domain with extensive homology to the Arabidopsis thaliana rbohF (respiratory burst oxidase homolog) gene. Pharmacological dissection of the early events preceding ROS emission revealed that …

Arbovirus Persistence And Selection Of Persistent Variants Following Chronic Infection In Aedine Mosquitoes: A Comparative Study Between Ae. Aegypti And Ae. Albopictus 30 Days Post Infection With Sindbis Virus, Zoe Leah Lyski

UNF Graduate Theses and Dissertations

In the present investigation two container breeding mosquitoes, Aedes aegypti and Aedes albopictus were exposed to Sindbis virus (SINV). Mosquitoes were proffered a viremic bloodmeal using a vertical membrane feeder in an attempt to infect females while preserving virus-gut interactions that are speculated to be responsible for amplification and selective roles encountered in nature. Cohorts of 50 mosquitoes of each species were exposed to SINV strain TR339 or EMEM in a bloodmeal and incubated in insectary conditions for 30 days. Once infected, the mosquito remains persistently infected for life, accumulating mutations in the virus RNA genome. Plaque size variants may …

Caspase-Cleaved Glial Fibrillary Acidic Protein Within Cerebellar White Matter Of The Alzheimer's Disease Brain, Troy T. Rohn, Lindsey W. Catlin, Wayne W. Poon

Biology Faculty Publications and Presentations

Although the cerebellum is generally thought of as an area spared of Alzheimer's disease (AD) pathology, recent evidence suggests that balance and mobility dysfunction may be magnified in affected individuals. In the present study, we sought to determine the degree of pathological changes within the cerebellum utilizing an antibody that specifically detects caspase-cleaved GFAP within degenerating astrocytes. Compared to control subjects, application of this antibody, termed the GFAP caspase-cleavage product (GFAPccp) antibody, revealed widespread labeling in cerebellar white matter with little staining observed in grey matter. Staining was observed within damaged astrocytes, was often localized near blood vessels and co-localized …

Hand Pulling Following Mowing And Herbicide Treatments Increases Control Of Spotted Knapweed (Centaurea Stoebe), Neil W. Macdonald, Laurelin M. Martin, Corey K. Kapolka, Timothy F. Botting, Tami E. Brown

Peer Reviewed Publications

Extensive areas in the upper Midwest have been invaded by spotted knapweed, and effective management strategies are required to reestablish native plant communities. We examined effects of mowing, mowing plus clopyralid, or mowing plus glyphosate in factorial combination with hand pulling and burning on knapweed abundances on a knapweed-infested site in western Michigan. We applied mowing and herbicide treatments in summer 2008, and seeded all plots with native grasses and forbs in spring 2009. We conducted the knapweed pulling treatment from 2009 to 2012 in July. The prescribed burn was conducted in April 2012. By 2012, hand pulling reduced adult …

Wetting And Drying Cycles And The Fungal Communities On Leaf Litter In Streams, Kele Qwinn Thrailkill

Masters Theses

"Leaf litter is a major source of energy for streams in deciduous forests. Fungi play a critical role by converting the leaves into nutritional material for the rest of the food web. The breakdown of leaf litter and associated biota, including invertebrates and fungi, have been proposed as measures of stream health in systems affected by anthropogenic activity. Rates of leaf breakdown can be depressed in streams affected by acidity, metals, organic contaminants, and other stressors. Climate change may lead to alterations in stream hydrology such that streams experience more frequent floods as well as drying episodes. Fungal communities can …

Thymoquinone Decreases Oxidative Dna Damage (8-Ohdg) In Dmba Treated Female Sprague Dawley Rats, Abrar A. Sindi

EWU Masters Thesis Collection

"Tamoxifen (TAM) is used widely for treatment and prevention of breast cancer. However, TAM has been reported to have a negative effect on glutathione (GSH) levels and 8-hydroxydeoxyguanosine (8-OHdG). Thymoquinone (TQ), the main active ingredient of Nigella sativa, or Black seeds, is used in the Middle East for treatment of several diseases, especially cancer. The aim of my research was to investigate the role of thymoquinone in improving 8-OHdG and GSH compared with tamoxifen in female Sprague Dawley rats treated with 7,12 dimethylbenz (a)anthracene (DMBA, a drug that induces mammary cancer). 8-OHdG is the most commonly assayed fingerprint of free …

A Genetic Screen To Identify Novel Helicobacter Pylori Virulence Factors Using Saccharomyces Cerevisiae As A Model Eukaryotic Cell, Amelia M. Bothwell

EWU Masters Thesis Collection

"Helicobacter pylori is a spiral, gram-negative bacterium that colonizes the stomachs of approximately 50% of the World's population overall and is a major etiological agent of human gastric adenocarcinoma. Of infected individuals, only 10-15% develop severe gastric disease due to environmental factors, host genetic factors, and more significantly, genetic differences in the infecting H pylori strains. Type I strains of H pylori contain a 40-kb cytotoxin-associated pathogenicity island (cag PAl) that encodes and secretes the CagA protein into host epithelial cells via a type IV secretion system. To date, CagA is the only identified effector protein of the cag PAI. …