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2012

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Articles 91 - 120 of 1224

Full-Text Articles in Biology

The Rise And Fall Of Kin Structure In The Neotropical, Family-Living Buff-Breasted Wren (Cantorchilus Leucotis) In Gamboa, Panama, Sarah C. Alessi Dec 2012

The Rise And Fall Of Kin Structure In The Neotropical, Family-Living Buff-Breasted Wren (Cantorchilus Leucotis) In Gamboa, Panama, Sarah C. Alessi

Masters Theses

Family-living species provide an exciting model to examine how natal dispersal and kin structure influence genetic structuring within local populations. Juvenile buff-breasted wrens (Cantorchilus leucotis) of both sexes delay dispersal and exhibit short-distance natal dispersal, which should lead to kin-structured populations in which relatives of both sexes occupy neighboring territories. Blood samples collected from juvenile and adult wrens in Gamboa, Panama were analyzed using microsatellite markers to determine whether related individuals are spatially clustered on neighboring territories, spatial clusters of relatives change over time, and if kin structure is sex-specific. Global and local spatial autocorrelation analyses detected genetic …


Biochemical Reconstitution Of Hemorrhagic-Fever Arenavirus Envelope Glycoprotein-Mediated Membrane Fusion, Celestine J. Thomas, Sundaresh Shankar, Hedi E. Casquilho-Gray, Joanne York, Stephen Sprang, Jack H. Nunberg Nov 2012

Biochemical Reconstitution Of Hemorrhagic-Fever Arenavirus Envelope Glycoprotein-Mediated Membrane Fusion, Celestine J. Thomas, Sundaresh Shankar, Hedi E. Casquilho-Gray, Joanne York, Stephen Sprang, Jack H. Nunberg

Biological Sciences Faculty Publications

The membrane-anchored proteins of enveloped viruses form labile spikes on the virion surface, primed to undergo large-scale conformational changes culminating in virus-cell membrane fusion and viral entry. The prefusion form of these envelope glycoproteins thus represents an important molecular target for antiviral intervention. A critical roadblock to this endeavor has been our inability to produce the prefusion envelope glycoprotein trimer for biochemical and structural analysis. Through our studies of the GPC envelope glycoprotein of the hemorrhagic fever arenaviruses, we have shown that GPC is unique among class I viral fusion proteins in that the mature complex retains a stable signal …


Proteome Analyses Of Strains Cyanothece Atcc 51142 And Pcc 7822 Of The Diazotrophic Cyanobacterium Cyanothece Sp. Under Culture Conditions Resulting In Enhanced H2 Production., Uma K. Aryal, Stephen J. Callister, Sujata Mishra, Xiaohui Zhang, Janani I. Shutthanandan, Thomas E. Angel, Anil K. Shukla, Matthew E. Monroe, Ronald J. Moore, David W. Koppenhaal, Richard D. Smith, Louis A. Sherman Nov 2012

Proteome Analyses Of Strains Cyanothece Atcc 51142 And Pcc 7822 Of The Diazotrophic Cyanobacterium Cyanothece Sp. Under Culture Conditions Resulting In Enhanced H2 Production., Uma K. Aryal, Stephen J. Callister, Sujata Mishra, Xiaohui Zhang, Janani I. Shutthanandan, Thomas E. Angel, Anil K. Shukla, Matthew E. Monroe, Ronald J. Moore, David W. Koppenhaal, Richard D. Smith, Louis A. Sherman

Department of Biological Sciences Faculty Publications

Cultures of the cyanobacterial genus Cyanothece have been shown to produce high levels of biohydrogen. These strains are diazotrophic and undergo pronounced diurnal cycles when grown under N2-fixing conditions in light-dark cycles. We seek to better understand the way in which proteins respond to these diurnal changes, and we performed quantitative proteome analysis of Cyanothecesp. strains ATCC 51142 and PCC 7822 grown under 8 different nutritional conditions. Nitrogenase expression was limited to N2-fixing conditions, and in the absence of glycerol, nitrogenase gene expression was linked to the dark period. However, glycerol induced expression of nitrogenase during …


Septin Phosphorylation And Coiled-Coil Domains Function In Cell And Septin Ring Morphology In The Filamentous Fungus Ashbya Gossypii, Rebecca A. Meseroll, Patricia Occhipinti, Amy S. Gladfelter Nov 2012

Septin Phosphorylation And Coiled-Coil Domains Function In Cell And Septin Ring Morphology In The Filamentous Fungus Ashbya Gossypii, Rebecca A. Meseroll, Patricia Occhipinti, Amy S. Gladfelter

Dartmouth Scholarship

Septins are a class of GTP-binding proteins conserved throughout many eukaryotes. Individual septin subunits associate with one another and assemble into heteromeric complexes that form filaments and higher-order structures in vivo. The mechanisms underlying the assembly and maintenance of higher-order structures in cells remain poorly understood. Septins in several organisms have been shown to be phosphorylated, although precisely how septin phosphorylation may be contributing to the formation of high-order septin structures is unknown. Four of the five septins expressed in the filamentous fungus, Ashbya gossypii, are phosphorylated, and we demonstrate here the diverse roles of these phosphorylation sites …


Projected Climate Change Impacts On The Hydrology And Temperature Of Pacific Northwest Rivers, Huan Wu, John S. Kimball, Marketa M. Elsner, Nate Mantua, Robert F. Adler, Jack Arthur Stanford Nov 2012

Projected Climate Change Impacts On The Hydrology And Temperature Of Pacific Northwest Rivers, Huan Wu, John S. Kimball, Marketa M. Elsner, Nate Mantua, Robert F. Adler, Jack Arthur Stanford

Biological Sciences Faculty Publications

A dominant river-tracing-based streamflow and temperature (DRTT) model was developed by coupling stream thermal dynamics with a source-sink routing model. The DRTT model was applied using 1/16 degree (similar to 6 km) resolution gridded daily surface meteorology inputs over a similar to 988,000 km(2) Pacific Northwest (PNW) domain to produce regional daily streamflow and temperature simulations from 1996 to 2005. The DRTT results showed favorable performance for simulation of daily stream temperature (mean R-2 = 0.72 and root-mean-square error = 2.35 degrees C) and discharge (mean R-2 = 0.52 and annual relative error 14%) against observations from 12 PNW streams. …


Localizing Brain Regions Associated With Female Mate Preference Behavior In A Swordtail, Ryan Y. Wong, Mary E. Ramsey, Molly E. Cummings Nov 2012

Localizing Brain Regions Associated With Female Mate Preference Behavior In A Swordtail, Ryan Y. Wong, Mary E. Ramsey, Molly E. Cummings

Biology Faculty Publications

Female mate choice behavior is a critical component of sexual selection, yet identifying the neural basis of this behavior is largely unresolved. Previous studies have implicated sensory processing and hypothalamic brain regions during female mate choice and there is a conserved network of brain regions (Social Behavior Network, SBN) that underlies sexual behaviors. However, we are only beginning to understand the role this network has in pre-copulatory female mate choice. Using in situ hybridization, we identify brain regions associated with mate preference in female Xiphophorus nigrensis, a swordtail species with a female choice mating system. We measure gene expression in …


Late Embryogenesis Abundant Proteins Protect Human Hepatoma Cells During Acute Desiccation, Shumin Li, Nilay Chakraborty, Apurva Borcar, Michael A. Menze, Mehmet Toner, Steven C. Hand Nov 2012

Late Embryogenesis Abundant Proteins Protect Human Hepatoma Cells During Acute Desiccation, Shumin Li, Nilay Chakraborty, Apurva Borcar, Michael A. Menze, Mehmet Toner, Steven C. Hand

Faculty Research & Creative Activity

Expression of late embryogenesis abundant (LEA) proteins is highly correlated with desiccation tolerance in anhydrobiotic animals, selected land plants, and bacteria. Genes encoding two LEA proteins, one localized to the cytoplasm/nucleus (AfrLEA2) and one targeted to mitochondria (AfrLEA3m), were stably transfected into human HepG2 cells. A trehalose transporterwas used for intracellular loading of this disaccharide. Cellswere rapidly and uniformly desiccated to low water content (<0.12 g H2O/g dry weight) with a recently developed spin-drying technique. Immediately on rehydration, control cells without LEA proteins or trehalose exhibited 0% membrane integrity, comparedwith 98% in cells loaded with trehalose and expressing AfrLEA2 or AfrLEA3m; surprisingly, AfrLEA3m without trehalose conferred 94% protection. Cell proliferation across 7 d showed an 18-fold increase for cells dried with AfrLEA3m and trehalose, compared with 27-fold for nondried controls. LEA proteins dramatically enhance desiccation tolerance in mammalian cells and offer the opportunity for engineering biostability in the dried state.


Late Embryogenesis Abundant Proteins Protect Human Hepatoma Cells During Acute Desiccation., Shumin Li, Nilay Chakraborty, Apurva Borcar, Michael Menze, Mehmet Toner, Steven Hand Nov 2012

Late Embryogenesis Abundant Proteins Protect Human Hepatoma Cells During Acute Desiccation., Shumin Li, Nilay Chakraborty, Apurva Borcar, Michael Menze, Mehmet Toner, Steven Hand

Faculty and Staff Scholarship

Expression of late embryogenesis abundant (LEA) proteins is highly correlated with desiccation tolerance in anhydrobiotic animals, selected land plants, and bacteria. Genes encoding two LEA proteins, one localized to the cytoplasm/nucleus (AfrLEA2) and one targeted to mitochondria (AfrLEA3m), were stably transfected into human HepG2 cells. A trehalose transporterwas used for intracellular loading of this disaccharide. Cellswere rapidly and uniformly desiccated to low water content (< 0.12 g H2O/g dry weight) with a recently developed spin-drying technique. Immediately on rehydration, control cells without LEA proteins or trehalose exhibited 0% membrane integrity, comparedwith 98% in cells loaded with trehalose and expressing AfrLEA2 or AfrLEA3m; surprisingly, AfrLEA3m without trehalose conferred 94% protection. Cell proliferation across 7 d showed an 18-fold increase for cells dried with AfrLEA3m and trehalose, compared with 27-fold for nondried controls. LEA proteins dramatically enhance desiccation tolerance in mammalian cells and offer the opportunity for engineering biostability in the dried state.


Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek Nov 2012

Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek

Faculty Publications, Biological Sciences

Ambush predation is characterized by an animal scanning the environment from a concealed position and then rapidly executing a surprise attack. Mantis shrimp (Stomatopoda) consist of both ambush predators (‘spearers’) and foragers (‘smashers’). Spearers hide in sandy burrows and capture evasive prey, whereas smashers search for prey away from their burrows and typically hammer hard-shelled, sedentary prey. Here, we examined the kinematics, morphology and field behavior of spearing mantis shrimp and compared them with previously studied smashers. Using two species with dramatically different adult sizes, we found that strikes produced by the diminutive species, Alachosquilla vicina, were faster (mean peak …


Na+/K+-Atpase Isoform Regulation In Three-Spine Stickleback (Gasterosteus Aculeatus) During Salinity Acclimation, Shelby Judd Nov 2012

Na+/K+-Atpase Isoform Regulation In Three-Spine Stickleback (Gasterosteus Aculeatus) During Salinity Acclimation, Shelby Judd

College of Science and Health Theses and Dissertations

Most marine and all freshwater fishes regulate the ionic and osmotic composition of their extracellular fluids different from the outside environment. The gills play a prominent osmoregulatory role in maintaining whole body ion and water balance in fish living in both freshwater and saltwater environments. The ability of the gill to regulate salts is dependent on the action of the Na+/K+-ATPase. When euryhaline fishes, fishes able to tolerate changes in external salinity, experience changes in environmental salinity, they alter their gill physiology and Na+/K+-ATPase activity to handle changing osmotic and ionic stresses. …


Macroevolutionary Dynamics And Historical Biogeography Of Primate Diversification Inferred From A Species Supermatrix, Mark S. Springer, Robert Meredith, John Gatesy, Christopher A. Emerling, Jong Park, Daniel L. Rabosky, Tanja Stadler, Cynthia Steiner, Oliver A. Ryder, Jan E. Janečka, Colleen A. Fisher, William J. Murphy Nov 2012

Macroevolutionary Dynamics And Historical Biogeography Of Primate Diversification Inferred From A Species Supermatrix, Mark S. Springer, Robert Meredith, John Gatesy, Christopher A. Emerling, Jong Park, Daniel L. Rabosky, Tanja Stadler, Cynthia Steiner, Oliver A. Ryder, Jan E. Janečka, Colleen A. Fisher, William J. Murphy

Department of Biology Faculty Scholarship and Creative Works

Phylogenetic relationships, divergence times, and patterns of biogeographic descent among primate species are both complex and contentious. Here, we generate a robust molecular phylogeny for 70 primate genera and 367 primate species based on a concatenation of 69 nuclear gene segments and ten mitochondrial gene sequences, most of which were extracted from GenBank. Relaxed clock analyses of divergence times with 14 fossil-calibrated nodes suggest that living Primates last shared a common ancestor 71-63 Ma, and that divergences within both Strepsirrhini and Haplorhini are entirely post-Cretaceous. These results are consistent with the hypothesis that the Cretaceous-Paleogene mass extinction of non-avian dinosaurs …


Toward The Beginning Of Time: Circadian Rhythms In Metabolism Precede Rhythms In Clock Gene Expression In Mouse Embryonic Stem Cells, Jiffin K. Paulose, Edmund B. Rucker Iii, Vincent M. Cassone Nov 2012

Toward The Beginning Of Time: Circadian Rhythms In Metabolism Precede Rhythms In Clock Gene Expression In Mouse Embryonic Stem Cells, Jiffin K. Paulose, Edmund B. Rucker Iii, Vincent M. Cassone

Biology Faculty Publications

The appearance, progression, and potential role for circadian rhythms during early development have previously focused mainly on the suprachiasmatic nucleus (SCN) and peri- and postnatal expression of canonical clock genes. More recently, gene expression studies in embryonic stem cells have shown that some clock genes are expressed in undifferentiated cells; however rhythmicity was only established when cells are directed toward a neural fate. These studies also concluded that a functional clock is not present in ESCs, based solely on their gene expression. The null hypothesis underlying the present study is that embryonic stem cells become rhythmic in both clock gene …


Effect Of Conformation Sampling Strategies In Genetic Algorithm For Multiple Protein Docking., Juan Esquivel-Rodriguez, Daisuke Kihara Nov 2012

Effect Of Conformation Sampling Strategies In Genetic Algorithm For Multiple Protein Docking., Juan Esquivel-Rodriguez, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Background

Macromolecular protein complexes play important roles in a cell and their tertiary structure can help understand key biological processes of their functions. Multiple protein docking is a valuable computational tool for providing structure information of multimeric protein complexes. In a previous study we developed and implemented an algorithm for this purpose, named Multi-LZerD. This method represents a conformation of a multimeric protein complex as a graph, where nodes denote subunits and each edge connecting nodes denotes a pairwise docking conformation of the two subunits. Multi-LZerD employs a genetic algorithm to sample different topologies of the graph and pairwise transformations …


Evaluation Of Function Predictions By Pfp, Esg, And Psi-Blast For Moonlighting Proteins., Ishita K. Khan, Meghana Chitale, Catherine Rayon, Daisuke Kihara Nov 2012

Evaluation Of Function Predictions By Pfp, Esg, And Psi-Blast For Moonlighting Proteins., Ishita K. Khan, Meghana Chitale, Catherine Rayon, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Background

Advancements in function prediction algorithms are enabling large scale computational annotation for newly sequenced genomes. With the increase in the number of functionally well characterized proteins it has been observed that there are many proteins involved in more than one function. These proteins characterized as moonlighting proteins show varied functional behavior depending on the cell type, localization in the cell, oligomerization, multiple binding sites, etc. The functional diversity shown by moonlighting proteins may have significant impact on the traditional sequence based function prediction methods. Here we investigate how well diverse functions of moonlighting proteins can be predicted by some …


Blt1 And Mid1 Provide Overlapping Membrane Anchors To Position The Division Plane In Fission Yeast, Merce Guzman-Vendrell, Suzanne Baldissard, Maria Almonacid, Adeline Mayeux, Anne Paoletti, James B. Moseley Nov 2012

Blt1 And Mid1 Provide Overlapping Membrane Anchors To Position The Division Plane In Fission Yeast, Merce Guzman-Vendrell, Suzanne Baldissard, Maria Almonacid, Adeline Mayeux, Anne Paoletti, James B. Moseley

Dartmouth Scholarship

Spatial control of cytokinesis is essential for proper cell division. The molecular mechanisms that anchor the dynamic assembly and constriction of the cytokinetic ring at the plasma membrane remain unclear. In the fission yeast Schizosaccharomyces pombe, the cytokinetic ring is assembled in the cell middle from cortical node precursors that are positioned by the anillin-like protein Mid1. During mitotic entry, cortical nodes mature and then compact into a contractile ring positioned in the cell middle. The molecular link between Mid1 and medial cortical nodes remains poorly defined. Here we show that Blt1, a previously enig- matic cortical node protein, promotes …


Physiological Epicotyl Dormancy And Recalcitrant Storage Behaviour In Seeds Of Two Tropical Fabaceae (Subfamily Caesalpinioideae) Species, K. M. G. Gehan Jayasuriya, Asanga S. T. B. Wijetunga, Jerry M. Baskin, Carol C. Baskin Nov 2012

Physiological Epicotyl Dormancy And Recalcitrant Storage Behaviour In Seeds Of Two Tropical Fabaceae (Subfamily Caesalpinioideae) Species, K. M. G. Gehan Jayasuriya, Asanga S. T. B. Wijetunga, Jerry M. Baskin, Carol C. Baskin

Biology Faculty Publications

BACKGROUND AND AIMS: Physiological epicotyl dormancy in which the epicotyl elongates inside the seed before the shoot emerges has been reported for only a few tropical rainforest species, all of which are trees that produce recalcitrant seeds. In studies on seeds of Fabaceae in Sri Lanka, we observed a considerable time delay in shoot emergence following root emergence in seeds of the introduced caesalpinioid legumes Brownea coccinea and Cynometra cauliflora. Thus, our aim was to determine if seeds of these two tropical rainforest trees have physiological epicotyl dormancy, and also if they are recalcitrant, i.e. desiccation sensitive.

METHODOLOGY: Fresh seeds …


Inhibition Of Microrna-302 (Mir-302) By Bone Morphogenetic Protein 4 (Bmp4) Facilitates The Bmp Signaling Pathway, Hara Kang, Justin Louie, Alexandra Weisman, Jessica Sheu-Gruttadauria, Brandi N. Davis-Dusenbery, Giorgio Lagna, Akiko Hata Nov 2012

Inhibition Of Microrna-302 (Mir-302) By Bone Morphogenetic Protein 4 (Bmp4) Facilitates The Bmp Signaling Pathway, Hara Kang, Justin Louie, Alexandra Weisman, Jessica Sheu-Gruttadauria, Brandi N. Davis-Dusenbery, Giorgio Lagna, Akiko Hata

Biology

The signaling pathway mediated by BMPs plays an essential role during development as well as the maintenance of homeostasis in adult. Aberrant activation or inactivation of BMP signaling can lead to developmental defects and various human disorders. To fine-tune its activity, BMP signaling is regulated both positively and negatively by extrinsic and intrinsic regulatory factors that modulate binding of ligand to the receptors, and the activity of receptors and their dedicated signal transducers, the Smad proteins. Upon BMP binding to the receptor complex, Smad proteins translocate to the nucleus and modulate gene expression transcriptionally by directly associating with the promoter …


Effective Inter-Residue Contact Definitions For Accurate Protein Fold Recognition., Chao Yuan, Hao Chen, Daisuke Kihara Nov 2012

Effective Inter-Residue Contact Definitions For Accurate Protein Fold Recognition., Chao Yuan, Hao Chen, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Background

Effective encoding of residue contact information is crucial for protein structure prediction since it has a unique role to capture long-range residue interactions compared to other commonly used scoring terms. The residue contact information can be incorporated in structure prediction in several different ways: It can be incorporated as statistical potentials or it can be also used as constraints in ab initio structure prediction. To seek the most effective definition of residue contacts for template-based protein structure prediction, we evaluated 45 different contact definitions, varying bases of contacts and distance cutoffs, in terms of their ability to identify proteins …


Tug-Of-War In Motor Protein Ensembles Revealed With A Programmable Dna Origami Scaffold, N. D. Derr, B. S. Goodman, R. Jungmann, A. E. Leschziner, W. M. Shih, S. L. Reck-Peterson Nov 2012

Tug-Of-War In Motor Protein Ensembles Revealed With A Programmable Dna Origami Scaffold, N. D. Derr, B. S. Goodman, R. Jungmann, A. E. Leschziner, W. M. Shih, S. L. Reck-Peterson

Biological Sciences: Faculty Publications

Cytoplasmic dynein and kinesin-1 are microtubule-based motors with opposite polarity that transport a wide variety of cargo in eukaryotic cells. Many cellular cargos demonstrate bidirectional movement due to the presence of ensembles of dynein and kinesin, but are ultimately sorted with spatial and temporal precision. To investigate the mechanisms that coordinate motor ensemble behavior, we built a programmable synthetic cargo using three-dimensional DNA origami to which varying numbers of DNA oligonucleotide-linked motors could be attached, allowing for control of motor type, number, spacing, and orientation in vitro. In ensembles of one to seven identical-polarity motors, motor number had minimal affect …


Ornamental Bill Color Rapidly Signals Changing Condition, M. F. Rosenthal, Troy G. Murphy, N. Darling, K. A. Tarvin Nov 2012

Ornamental Bill Color Rapidly Signals Changing Condition, M. F. Rosenthal, Troy G. Murphy, N. Darling, K. A. Tarvin

Biology Faculty Research

Ornamental bill color is postulated to function as a condition-dependent signal of individual quality in a variety of taxonomically distant bird families. Most red, orange, and yellow bill colors are derived from carotenoid pigments, and carotenoid deposition in ornamentation may trade off with their use as immunostimulants and antioxidants or with other physiological functions. Several studies have found that bill color changes in response to physiological perturbations, but how quickly such changes can occur remains unclear. We tested the hypothesis that carotenoid-based orange bill color of American goldfinches Spinus tristis responds dynamically to rapid changes in physiological stress and reflects …


Metabolic Preconditioning Of Mammalian Cells: Mimetic Agents For Hypoxia Lack Fidelity In Promoting Phosphorylation Of Pyruvate Dehydrogenase, Apurva Borcar, Michael A. Menze, Mehmet Toner, Steven C. Hand Nov 2012

Metabolic Preconditioning Of Mammalian Cells: Mimetic Agents For Hypoxia Lack Fidelity In Promoting Phosphorylation Of Pyruvate Dehydrogenase, Apurva Borcar, Michael A. Menze, Mehmet Toner, Steven C. Hand

Faculty Research & Creative Activity

Induction of HIF-1α by oxygen limitation promotes increased phosphorylation and catalytic depression of mitochondrial pyruvate dehydrogenase (PDH) and an enhanced glycolytic poise in cells. Cobalt chloride and desferrioxamine are widely used as mimics for hypoxia because they increase the levels of HIF-1α. We evaluated the ability of these agents to elicit selected physiological responses to hypoxia as a means to metabolically precondition mammalian cells, but without the detrimental effects of hypoxia. We show that, while CoCl2 does increase HIF-1α in a dose-dependent manner, it unexpectedly and strikingly decreases PDH phosphorylation at E1α sites 1, 2, and 3 (Ser293, Ser300, and …


Evidence For An Interaction Of Neuronostatin With The Orphan G Protein-Coupled Receptor, Gpr107, Gina L.C. Yosten, Lauren J. Redlinger, Willis K. Samson Nov 2012

Evidence For An Interaction Of Neuronostatin With The Orphan G Protein-Coupled Receptor, Gpr107, Gina L.C. Yosten, Lauren J. Redlinger, Willis K. Samson

Biological Sciences Faculty Research & Creative Works

Neuronostatin, derived from the somatostatin preprohormone, is a recently described peptide that is produced by several tissues involved in cardiovascular regulation and metabolism, including the hypothalamus. Injection of neuronostatin into the lateral cerebroventricle led to a dose-related increase in mean arterial pressure (MAP) in rats. Any attempt to inhibit the production of neuronostatin would alter somatostatin production as well, making determination of the physiological relevance of the peptide's pharmacologic effects by compromise of production approaches impossible. Therefore, we employed an alternative approach to identify and compromise the production of the neuronostatin receptor. Because neuronostatin was shown to signal via a …


Performance And Scaling Of A Novel Locomotor Structure: Adhesive Capacity Of Climbing Gobiid Fishes, Richard W. Blob, Takashi Maie, Heiko L. Schoenfuss Nov 2012

Performance And Scaling Of A Novel Locomotor Structure: Adhesive Capacity Of Climbing Gobiid Fishes, Richard W. Blob, Takashi Maie, Heiko L. Schoenfuss

Publications

Many species of gobiid fishes adhere to surfaces using a sucker formed from fusion of the pelvic fins. Juveniles of many amphidromous species use this pelvic sucker to scale waterfalls during migrations to upstream habitats after an oceanic larval phase. However, adults may still use suckers to re-scale waterfalls if displaced. If attachment force is proportional to sucker area and if growth of the sucker is isometric, then increases in the forces that climbing fish must resist might outpace adhesive capacity, causing climbing performance to decline through ontogeny. To test for such trends, we measured pressure differentials and adhesive suction …


The Isolation And Identification Of A Causative Agent Of The Feather Disorder Found In African Penguins (Spheniscus Demersus), Stephen Mele, Kristin F. Picardo, Gregory B. Cunningham, Daryl D. Hurd Nov 2012

The Isolation And Identification Of A Causative Agent Of The Feather Disorder Found In African Penguins (Spheniscus Demersus), Stephen Mele, Kristin F. Picardo, Gregory B. Cunningham, Daryl D. Hurd

Biology Faculty/Staff Publications

Beginning in 2006, wild juvenile African Penguins (Spheniscus demersus) began to prematurely lose their juvenile feathers without immediate regrowth and were brought to the South African Foundation for the Conservation of Coastal Birds (SANCCOB) for rehabilitation5. Without immediate regrowth of feathers, energy is shunted away from growth and used for thermoregulation and metabolism. It has previously been hypothesized that potential viral and bacterial infections may be causing this disorder3,4. To test for this, Avian Polyomavirus (APV) nucleic acids, Budrigars Beak and Feather Disease Virus (BFDV) nucleic acids, and any bacterial nucleic acids were attempted to be isolated from the blood …


Self-Enhancement Processing In The Default Network: A Single-Pulse Tms Study, Bruce Luber, Hans C. Lou, Julian Keenan, Sarah H. Lisanby Nov 2012

Self-Enhancement Processing In The Default Network: A Single-Pulse Tms Study, Bruce Luber, Hans C. Lou, Julian Keenan, Sarah H. Lisanby

Department of Biology Faculty Scholarship and Creative Works

Abstract Much research has been done on positive self-evaluation and its relationship to mental health. However, little is known about its neural underpinnings. Imaging studies have suggested that the brain's default network is involved with self-related processing and that one portion of the default network, medial prefrontal cortex (MPFC), is particularly involved with self-evaluation. Here, we used transcranial magnetic stimulation (TMS) to causally demonstrate that this network, and particularly MPFC, is involved with self-evaluative processing. In a first experiment, 27 healthy volunteers judged whether adjectives, evenly divided between desirable and undesirable traits, described themselves or their best friends, and a …


Congruence And Indifference Between Two Molecular Markers For Understanding Oral Evolution In The Marynidae Sensu Lato (Ciliophora, Colpodea), Micah Dunthorn, Laura A. Katz, Thorsten Stoeck, Wilhelm Foissner Nov 2012

Congruence And Indifference Between Two Molecular Markers For Understanding Oral Evolution In The Marynidae Sensu Lato (Ciliophora, Colpodea), Micah Dunthorn, Laura A. Katz, Thorsten Stoeck, Wilhelm Foissner

Biological Sciences: Faculty Publications

Our understanding of the evolution of oral structures within the Colpodida is confounded by the low number of morphological characters that can be used in constructing hypotheses, and by the low taxon and character sampling in molecular phylogenetic analyses designed to assess these hypotheses. Here we increase character sampling by sequencing the mitochondrial SSU-rDNA locus for three isolates of the Marynidae sensu lato. We show that the inferred mitochondrial and nuclear SSU-rDNA trees, as well as concatenated and constrained analyses, are congruent in not recovering a monophyletic Marynidae. However, due to low node support, the trees are indifferent to whether …


Long‐Term Outcomes Of Venus Flytrap (Dionaea Muscipula) Establishment, James O. Luken Nov 2012

Long‐Term Outcomes Of Venus Flytrap (Dionaea Muscipula) Establishment, James O. Luken

Biology

Determining the success or failure of rare plant establishment requires long-term monitoring, but such monitoring is seldom conducted. A 2004 census of Venus flytrap populations created by seeding and transplanting was compared to a similar census in 2010. Of the 18 original populations, three were destroyed by logging operations, 12 decreased and three increased. Venus flytraps face several limitations keeping populations small. Consistent soil moisture and the presence of population remnants improved the long-term management outcomes.


Burrowing Owl (Athene Cunicularia) Nesting Ecology In Western Kansas, Carol D. Grover-Mariner Nov 2012

Burrowing Owl (Athene Cunicularia) Nesting Ecology In Western Kansas, Carol D. Grover-Mariner

Master's Theses or Doctor of Nursing Practice

The Burrowing Owl (Athene cunicularia) is a common occupant of Smoky Valley Ranch located in Logan County, Kansas, where the abundance of black-tailed prairie dog (Cynomys ludovicianus) burrows provides ideal habitat for the Burrowing Owl. The objectives of the study were to 1) estimate the densities of black-tailed prairie dog colonies through visual counts, 2) estimate nesting success and nest survival probabilities of the Burrowing Owl with the use of a burrow camera, and 3) estimate post-fledging dispersal and return rate of juvenile Burrowing Owl the following season. I located 96 potential nests from 24 March through 2 July 2007 …


Spite Versus Cheats: Competition Among Social Strategies Shapes Virulence In Pseudomonas Aeruginosa, R. Inglis, Sam Brown, Sam Brown, Angus Buckling Nov 2012

Spite Versus Cheats: Competition Among Social Strategies Shapes Virulence In Pseudomonas Aeruginosa, R. Inglis, Sam Brown, Sam Brown, Angus Buckling

Biology Department Faculty Works

Social interactions have been shown to play an important role in bacterial evolution and virulence. The majority of empirical studies conducted have only considered social traits in isolation, yet numerous social traits, such as the production of spiteful bacteriocins (anticompetitor toxins) and iron-scavenging siderophores (a public good) by the opportunistic pathogen Pseudomonas aeruginosa, are frequently expressed simultaneously. Crucially, both bacteriocin production and siderophore cheating can be favored under the same competitive conditions, and we develop theory and carry out experiments to determine how the success of a bacteriocin-producing genotype is influenced by social cheating of susceptible competitors and the resultant …


Scribble Acts In The Drosophila Fat-Hippo Pathway To Regulate Warts Activity, Shilpi Verghese, Indrayani Waghmare, Hailey Kwon, Katelin Hanes, Madhuri Kango-Singh Nov 2012

Scribble Acts In The Drosophila Fat-Hippo Pathway To Regulate Warts Activity, Shilpi Verghese, Indrayani Waghmare, Hailey Kwon, Katelin Hanes, Madhuri Kango-Singh

Biology Faculty Publications

Epithelial cells are the major cell-type for all organs in multicellular organisms. In order to achieve correct organ size, epithelial tissues need mechanisms that limit their proliferation, and protect tissues from damage caused by defective epithelial cells. Recently, the Hippo signaling pathway has emerged as a major mechanism that orchestrates epithelial development. Hippo signaling is required for cells to stop proliferation as in the absence of Hippo signaling tissues continue to proliferate and produce overgrown organs or tumors. Studies in Drosophila have led the way in providing a framework for how Hippo alters the pattern of gene transcription in target …