Biology Commons^™

Ecological Facilitation May Drive Major Evolutionary Transitions, Zaal Kikvidze, Ragan M. Callaway

Biological Sciences Faculty Publications

There is a growing consensus among ecologists that ecological facilitation comprises a historically overlooked but crucial suite of biotic interactions. Awareness of such positive interactions has recently led to substantial modifications in ecological theory. In this article we suggest how facilitation may be included in evolutionary theory. Natural selection based on competition provides a conceptually complete paradigm for speciation, but not for major evolutionary transitions-the emergence of new and more complex biological structures such as cells, organisms, and eusocial populations. We find that the successful theories developed to solve these specific problematic transitions show a consistent pattern: they focus on …

A Study Of A Proposed Molecular Mechanism For Idiopathic Cases Of Hypertension: Detection Of Aldosterone-Receptor Complex At Period Homolog 1 (Per1) Promoter Using Chromatin Immunoprecipitation (Chip), Brent Colin Turner

Departmental Honors & Graduate Capstone Projects

Hypertension severely affects the quality and quantity of life of those afflicted with the disease. In most cases where the cause is known, hypertension is due to an abnormally high sodium condition; however, the mechanism by which this occurs is unknown. This phenomenon is particularly detrimental to patients considered to be non-dippers, experiencing no nocturnal dip in blood pressure. A proposed molecular mechanism for the relationship between dipping and sodium concentration involves the regulation of the circadian gene Period 1 homolog (Per1) by aldosterone and was studied by using chromatin immunoprecipitation (ChIP). This technique results in an enrichment of the …

Naive Prey Versus Nonnative Predators: A Role For Behavior In Endangered Species Conservation, Stephanie A. Kraft

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fish are one of the most imperiled groups of vertebrates worldwide. Threats to fish fall into one of four general categories: physical habitat loss or degradation, chemical pollution, overfishing, and nonnative species introductions. Nonnative predatory fish often have a devastating impact on native prey, especially with endemic fish, whose restricted distribution and often limited evolutionary history with predators make them particularly susceptible to nonnative predators. One reason nonnative fish are often so efficient predators is that the native fish do not recognize the predator as a threat. Although many studies have examined the role of predator odor recognition, no fish …

My Two Boots ... A Walk Through The Wetlands. An Annual Outing For 700 Middle School Students, Julie Cwikla, Mark Lasalle, Sybil Wilner

Faculty Publications

No abstract provided.

Seed Predation On Slickspot Peppergrass By The Owyhee Harvester Ant, Joshua P. White

Boise State University Theses and Dissertations

1. (1) Seed predation can significantly restrict the reproductive output and individual fitness of plants, particular those plants that are rare or endangered. In some cases the total seed loss can reach 100%. Owyhee harvester ants, Pogonomyrmex salinus, actively remove the fruits and seeds of slickspot peppergrass, Lepidium papilliferum, a rare mustard endemic to southwest Idaho.
2. (2) Several experiments were conducted to quantify seed predation on L. papilliferum located within the foraging distance of P. salinus. Individuals exposed to harvester ants experienced a direct loss of fruits and seeds ( > 40%), whereas plants shielded from ants suffered almost …

Predator And Abiotic Effects On Hatching Phenotype And Survival Of Arboreal Frog Eggs With Implications For Phytoplankton, Jessica Hite

Theses and Dissertations

Historically studies have focused on either the terrestrial or aquatic environments independently. However, these systems are inherently linked through numerous pathways including organisms with complex life cycles. Both abiotic factors and predators of these organisms can influence connections by changing the number of prey moving across habitat boundaries and by changing the phenotype of prey. When the focal organisms are primary consumers, these effects may have important implications for ecosystem processes. My study investigated how terrestrial predators and abiotic factors affect the number and phenotype of herbivorous tadpole inputs into a tropical forest pond. I found that predators and abiotic …

The Effects Of Prenatal Exposure Of Valproic Acid On Cranial Nerve Nuclei: A Rat Model For An Autistic Phenotype, Shannon Pickup

Renée Crown University Honors Thesis Projects - All

Autistic spectrum disorder is a term referring to five pervasive developmental disorders characterized by impairment in social interaction, deficits in verbal and non-verbal communication and stereotyped repetitive behaviors and interests. The underlying brain injury that leads to autism is also unknown. The cause is also unknown but appears to be a combination of genetic and environmental factors. A study on prenatal thalidomide exposure found patients exposure on days 20-24 of gestation lead to a 1/3 rate of autism, a huge increase from the 1/150 rate of the general population. The thalidomide data suggests the initial injury leading to autism occurs …

Generation Of An Fsh Inducible Inh-[Alpha]-Flag-Gg-Icer I[Gamma] Ovarian Specific Gene Construct, Goce Bogdanoski

Theses, Dissertations and Culminating Projects

Avian animal models have led to many essential discoveries in molecular biology and biochemistry, including the discovery of vitamins, the chemistry behind vision and the development of transgenic hens as natural bioreactors for pharmaceutically relevant proteins. Hyperovulation in domesticated hens is considered a highly desirable genetic trait, a feature that has been explored in multiple studies and remains the focus of many biotech companies. Unlocking the molecular mechanism that controls ovulation may provide a basis for development in new reproductive technologies.

Previous research done on rodents provided data and identified a single transcription factor, the Inducible cAMP Early Repressor (ICER), …

Endurance And Exercise Physiology In Urosaurus Ornatus: Sex And Morph Differences?, Elizabeth Christine Foulkes

All-Inclusive List of Electronic Theses and Dissertations

Locomotory performance has been the focus of many ecological and evolutionary studies, and lizards have been a model system. While several studies have demonstrated interspecific differences in performance, few have examined intraspeciflc variation in performance and the suites of underlying physiological traits in tree lizards ( Uro.,·aurns ornatus) a species with alternative reproductive tactics that show variation in spatial use patterns. To assess the functional ecology of movement behaviors of male morphs and or females, I examined variation in exertion, plasma metabolites, plasma steroid hormones, and muscle fiber types in ornate tree lizards ( Urosaurus ornalus). In my study population, …

New Species And Expanded Geographic Ranges Of Gut Fungi And Their Symbiotic Relationship With Insect Hosts, Molly Elizabeth Bench

Boise State University Theses and Dissertations

Trichomycetes from suitable immature aquatic lower dipteran, mayfly and stonefly hosts (Baetidae, Capniidae, Chironomidae, Nemouridae, and Simuliidae) were collected and identified biweekly over a twelve month period, from an ephemeral system, Cottonwood Creek, in Boise, Idaho. The abundances of eight species of obligate endosymbionts from the genera Genistelloides, Harpella, Lancisporomyces, Paramoebidium, Smittium, and Zygopolaris were evaluated with host abundance for potential correlative relationships. The abundances of all of the examined species of gut fungi, except Smittium elongatum and S. megazygosporum, were positively correlated with the abundances of the hosts. The two species with non-significant relationships with their hosts' abundance were …

The Role Of Trna Modification Systems In The Cellular Stress Response, Margaret Daly

Biological Sciences

Transfer RNA(tRNA) is a small chain of nucleotides that participates in protein synthesis by pairing its anticodon with an mRNA codon and transferring an amino acid to a growing polypeptide chain. tRNA methyltransferases are a group of enzymes that can modify nucleosides in or around the anticodon, as well as at other parts of the tRNA. Recently, some of these modifications have been reported to enhance the translation of proteins that help the cell respond to and/or repair DNA damage. We hypothesize that the modifications catalyzed by some of the tRNA methyltransferases (Trms) stabilize the interaction between the mRNA codon …

Effects Of Carbachol And Vitamin C On Submandibular Salivary Gland Branching Morphogenesis, Nasiratu Larry

Biological Sciences

The Submandibular Salivary Gland (SMG) is formed by iterative branching of epithelial cells into secretory acinar endbuds and branched ducts that are extensively innervated by parasympathetic nerves which can influence gland development. Carbarrylcholine or carbachol, (an acetylcholine neurotransmitter analog), is a drug that binds to and activates the acetylcholine receptor. Previous research has suggested that carbachol on SMGs might delay ductal differentiation and affect actin localization in cells lining the lumen of ducts. Vitamin C has been shown to enhance matrix protein synthesis, which may accelerate cell differentiation. My goal was to test whether and how carbachol or modulation of …

Evolutionary Analysis Of Host Proteins Cd4, Cxcr4 And Ccr5, And Hiv/Siv Gp12, Lana Bunning

Biological Sciences

The acquired immune deficiency syndrome, AIDS, is a growing epidemic in the United States and the world. Since its discovery in 1981, the virus that causes AIDS, human immunodeficiency virus (HIV), has escalated. .Certain African ape (i.e., chimpanzees and gorillas) and monkey species are known to harbor forms of the virus termed SIV (simian immunodeficiency virus). Chimpanzees are the natural hosts of the SIV strains from which HIV-I evolved, but do not rapidly progress to AIDS, unlike their human relatives. In the wild, gorillas have been observed to harbor SIV, but this species' disease progression is currently unknown. As the …

Oceanic-Atmospheric Modes Of Variability And Their Effect On River Flow And Blue Crab (Callinectes Sapidus) Abundance In The Northcentral Gulf Of Mexico, Guillermo Humberto Sanchez-Rubio

Dissertations

Oceanic-atmospheric modes of variability occur on interdecadal, multidecadal, decadal, and interannual timescales and their influence on climate around the world has been confirmed. The present study investigates Mississippi River and Pascagoula River flows in response to the influence of one or more of the four oceanic-atmospheric modes of variability: the Pacific Decadal Oscillation (PDO), the Atlantic Multidecadal Oscillation (AMO), the North Atlantic Oscillation (NAO), and the El Nino Southern Oscillation (ENSO). These modes of variability are present in phases: PDO warm (PDOw) and cold (PDOc), AMO warm (AMOw) and cold (AMOc), NAO positive (NAOp) and negative (NAOn), and ENSO warm …

Cognitive Inference And Resulting Behaviors In Response To Ambiguous Threat In The Coyote, Canis Latrans, Sarah Shawnee Dawson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

While antipredator strategies have been a focus of behavioral research for decades, scientists generally study the responses of prey toward overt, explicit threat. However, risk can also be significant when a threat is covert, such as when an ambush predator may be nearby or a secondary threat remains after a predator's departure. Little is known about the mechanism that prey use to assess risk in a predator's absence. Tests were conducted to determine the manner in which coyotes respond to these ambiguous threats. Specifically, I tested whether coyotes respond to prior anthropogenic activity that has occurred near their only food …

Effects Of Targeted Grazing And Prescribed Burning On Fire Behavior And Community Dynamics Of A Cheatgrass (Bromus Tectorum)-Dominated Landscape, Joel M. Diamond

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Studies were conducted to determine the effectiveness of using targeted grazing and prescribed burning as tools to reduce fire hazards and cheatgrass (Bromus tectorum) dominance on rangelands in the northern Great Basin. A field study, with four grazing-burning treatments (graze and no-burn, graze and burn, no-graze and burn, and no-graze and no-burn), was conducted on a B. tectorum-dominated site near McDermitt, Nevada from 2005-2007. Cattle removed 80-90% of standing biomass in grazed plots in May 2005 and 2006 when B. tectorum was in the boot (phenological) stage. Grazed and ungrazed plots were burned in October 2005 and …

Predicting The Growth Potential Of A Shallow, Warm-Water Sport Fishery: A Spatially Explicit Bioenergetics Approach, Samuel Kirk Dahle

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Capturing the range of fish consumption and growth potential of large, heterogeneous lentic systems can be challenging due to strong gradients in productivity, the diversity of habits types present, and in some cases, site-specific water quality issues. Cutler Reservoir (Utah, USA) displays a high degree of spatial and temporal variation in physical conditions and potential water quality limitations for fish, including high summertime water temperature and large, diel fluctuations in dissolved oxygen concentrations. The combination of bioenergetics modeling and GIS spatial analysis offers a promising interface for quantifying the fish consumptive and growth potential across a spatially and temporally heterogeneous …

Microbial Growth Inhibition And Decomposition Of Milk Mineral And Sodium Tripolyphosphate Added To Media Or Fresh Ground Beef, Rossarin Tansawat

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Milk mineral (MM) is a type II antioxidant (metal chelator) that can bind iron and prevent iron catalysis of lipid oxidation. Thus, MM might have microbial growth inhibition effects on iron-dependent bacteria. Objective 1 was to evaluate effects of MM on growth of non-pathogenic iron-dependent bacterial strains (Listeria innocua, Eschericia coli, Pseudomonas fluorescens). MM (1.5 % w/v) did not significantly inhibit growth of Listeria and E. coli. However, growth of Pseudomonas fluorescens was consistently and significantly reduced by ~1 log colony forming units per ml (CFU/ml) with all levels of MM (0.5, 0.75, 1.5 % …

Characterization Of The Substrate Specificity And Mechanism Of Protein Arginine Methyltransferase 1, Whitney Lyn Wooderchak

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Protein arginine methyltransferases (PRMTs) posttranslationally modify protein arginine residues. Type I PRMTs catalyze the formation of monomethylarginine (MMA) and asymmetric dimethylarginine (ADMA) via methyl group transfer from S-adenosyl methionine onto protein arginine residues. Type II PRMTs generate MMA and symmetric dimethylarginine. PRMT-methylation affects many biological processes. Although PRMTs are vital to normal development and function, PRMT-methylation is also linked to cardiovascular disease, stroke, multiple sclerosis, and cancer.

Thus far, nine human PRMT isoforms have been identified with orthologues present in yeast, plants, and fish. PRMT1 predominates, performing an estimated 85% of all protein arginine methylation in vivo. Yet, the substrate …

A Study On The Mechanisms Of Mercury Tolerance In The Cyanobacterium, Synechococcus Sp. Iu 625, Winder Bienvenido Perez

Theses, Dissertations and Culminating Projects

Synechococcus sp. IU 625 (Anacystis nidulans) is a freshwater unicellular cyanobacterium and an obligate photoautotroph that readily harbors plasmids. This organism has been used in many studies to assess the effect of heavy metal toxicity as an environmental pollutant. In one of the few studies for strain IU 625, Simon isolated 4.7- MDa and 37-MDa plasmids in 1978. The relationship between these plasmids and the 7.6-kb and 46.6-kb plasmids of strain PCC 7942 is unknown. Primers designed based on the sequence of 46.6-kb plasmid pANL of PCC 7942 exhibited positive priming with isolated plasmid DNA from Syn. …

Spermiogenesis And In Vitro Culture Of Spermatogenic Cysts In Drosophila Pseudoobscura, Monicah Njogu

Seton Hall University Dissertations and Theses (ETDs)

Spennatogenesis is a complex process that involves differentiation and morphological changes of diploid stem cells into highly specialized, haploid, motile germ cells. Many of the transformative processes involved in mammalian spermatogenesis are conserved in flies, and their study would be facilitated by the availability of a reliable in vitro culture system. Culture of Drosophila melanogaster spermatogenic cysts is limited in usefulness because of early degeneration of cysts, low yield of elongated spermatozoa, and rare occurrences of motile sperm. We have developed a culture system for studying fly spermatogenesis using isolated spermatogenic cysts from the testes of Drosophila pseudoobscura. This species …

Distribution And Site Selection Of Le Conte's And Crissal Thrashers In The Mojave Desert: A Multi-Model Approach, Dawn Marie Fletcher

UNLV Theses, Dissertations, Professional Papers, and Capstones

Information on the distribution and habitat requirements of a species are critical components to the development of meaningful conservation plans. Such knowledge, however, is particularly difficult to obtain for species that are elusive and occur at low densities, such as the Le Conte's ( Toxostoma lecontei ) and Crissal (Toxostoma crissale ) thrashers. In association with a regional conservation plan, I evaluated the distribution and habitat selection of these thrashers within Clark County, Nevada in the eastern Mojave Desert. I used a call-broadcast approach to sample 432 stratified random locations, detecting Le Conte's thrashers at 45 locations and Crissal …

Arid Climate Decomposition And Decay: A Taphonomic Study Using Swine, James William Munkres

UNLV Theses, Dissertations, Professional Papers, and Capstones

The present project analyzes the taphonomic processes and variables involved in the decomposition and desiccation of animal remains in an arid/hyper-arid environment. The study and the derived data will assist in determining postmortem intervals for remains in modern contexts, inform judgments made regarding mortuary habits and techniques in archaeological contexts, and will improve our knowledge regarding taphonomic processes. Manner of deposition, the depositional surface/medium and arid-climate specific variables (temperature, water, insect activity, weathering, pH levels, and soil characteristics) were examined in this study. Reported observations are limited to the first ten months following death from early December through early October …

Stress Responses To Salinity In A Native Fresh Water Snake (Nerodia Rhombifer), Joana A. Cordoba

Theses and Dissertations - UTB/UTPA

Salinity stress at 0 ppt, 9 ppt, 18 ppt, and 27 ppt was investigated in Nerodia rhombifer, a fresh water snake. The purpose of this study was to establish if exposure to salinity could elicit a hormonal response in the form of corticosterone. Salinity treatment 27 ppt was lethal for 50% of the snakes. Factors such as population and gender differences were not significant, p=0.748 and p=0.135, respectively. Exposure to the different salinities did not significantly affect the overall mass of the animal, p=0.951. A significant increase in circulating corticosterone was noted in salinity treatments 0 ppt and 18 ppt, …

The Effects Of Stream Discharge And Channelization On The Macroinvertebrate Community In A Semi-Arid Landscape, Thomas L. Kennedy

Biology ETDs

The Middle Rio Grande is the second largest watershed in the southwestern United States and is a vitally important component for the biodiversity in the region. Similar to many other rivers, the MRG is a temporally dynamic system that unfortunately, has been subjected to river regulation. As a result, the river has become channelised in many reaches disconnecting it from the surrounding floodplain. The effects of river regulation on the MRG and its surrounding riparian zone were largely unknown. I tested three main hypothesis with regards to the macroinvertebrates in the MRG: 1) Does flow variability structure the aquatic macroinvertebrate …

Controls On Microbial Community Structure In Thermal Environments: Exploring Bacterial Diversity And The Relative Influence Of Geochemistry And Geography, Kendra Renee Mitchell

Biology ETDs

Community wide molecular surveys have revealed incredible hidden phylogenetic and metabolic diversity in microbial habitats. We have conducted the first microbial survey of Yellowstone National Park thermal environments, sampling 103 communities from across the park and across the range of conditions found. Yellowstone is particularly suited for this type of research because of the large number and wide variety of thermal springs, which are naturally occurring chemostats enabling examination of the factors that control microbes and drive community structure. In addition to samples for molecular microbial analysis, we collected water for extensive geochemical analysis in order to begin to deduce …

Transcriptomic Analysis Of The Entomopathogenic Nematode Heterorhabditis Bacteriophora Tto1, Byron J. Adams, Xiaodong Bai, Todd A. Ciche, Sandra Clifton, Randy Gaugler, Parwinder S. Grewal, Saskia A. Hogenhout, John Spieth, Paul W. Sternberg, Richard K. Wilson

Faculty Publications

Background: The entomopathogenic nematode Heterorhabditis bacteriophora and its symbiotic bacterium, Photorhabdus luminescens, are important biological control agents of insect pests. This nematode-bacterium-insect association represents an emerging tripartite model for research on mutualistic and parasitic symbioses. Elucidation of mechanisms underlying these biological processes may serve as a foundation for improving the biological control potential of the nematode-bacterium complex. This large-scale expressed sequence tag (EST) analysis effort enables gene discovery and development of microsatellite markers. These ESTs will also aid in the annotation of the upcoming complete genome sequence of H. bacteriophora. Results: A total of 31,485 high quality ESTs were generated …

Bioinformatic Study Of Snps And Phenotypes In Patients With Smith-Magenis Syndrome, Tyler Andrew Cox

Departmental Honors & Graduate Capstone Projects

Smith-Magenis Syndrome (SMS) is a human genetic disorder that is caused by either a deletion within chromosomal region 17p11.2 or a mutation of a gene in that region –the RAI1 gene. The most prominent phenotypes observed with this disorder are mental retardation, distinctive craniofacial features, and sleep disorders caused by an inverted pattern of serotonin secretion. The current methods for molecular detection of Smith-Magenis Syndrome are reliable for the detection of the deletions within chromosomal region 17p11.2, but are not reliable in detecting mutations with the RAI1 gene. One way to enhance the detection of RAI1 mutations is with the …

Molecular Characterization Of The Human Rai1 Promoter, Rose Irene Salzberg

Departmental Honors & Graduate Capstone Projects

Smith-Magenis syndrome (SMS) is a type of mental retardation disorder associated with a deletion of DNA from chromosome 17p11.2. It affects approximately18,000 individuals in the US alone. Major phenotypes are associated with a mutation in the Retinoic Acid-Inducible gene-1 (RAI1) and include: developmental delay, repetitive behaviors, short stature, and hoarse voice. Studying the molecular mechanisms that lead to SMS will help promote earlier detection of the disorder and will help develop a better treatment plan for patients. The purpose of this project was to characterize the promoter of RAI1. Studying the promoter of RAI1 will help determine the normal expression …

Analyzing The Interconnectedness Between Space, Place, And Human Interaction With The Natural Environment: "Ecological Reawakening: Organic Dna And Evolution", Sarah Moos

Scripps Senior Theses

I have organized this paper into four chapters: "The Environmental Situation," "Space and Place," "Art and the Natural Environment," and "Creating Work of My Own." Chapter 1 explains human beings' intrinsic interconnection to the natural environment, outlining why humans should be concerned about the current degraded state of the natural world. Chapter 2 discusses the concepts of space and place. It analyzes how human beings interact with and experience spaces, developing their sense of place - within physical, theoretical, and spiritual realms. It finally illustrates the importance that spaces and places have in humans' lives. Chapter 3 describes the Land …