Biology Commons^™

Application Of Electrified Fladry To Decrease Risk Of Livestock Depredation By Wolves (Canis Lupus), Nathan J. Lance

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wolf (Canis lupus) predation on livestock can cause economic and emotional hardships for livestock producers, complicating the balance of wolf conservation with other human interests. New management tools that decrease risk of predation may offer additional flexibility or efficiency for both livestock producers and management agencies. I examined 1) the efficacy of electrified fladry compared to fladry at protecting a food source from wolves in captivity, 2) the efficacy of electrified fladry for reducing wolf use of pastures and preventing depredations, and 3) the applicability of electrified-fladry. In captivity I tested the reaction from 15 groups (46 wolves) …

Social Acceptability Of Conifer Control And Sagebrush Restoration In The Northern Rocky Mountain Region, Cameron G. Nay

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the past two centuries, woody plant species have increased in density and extent throughout the rangelands of North America. This encroachment generally has undesirable effects on hydrological function, forest resources, and plant community composition. Encroachment of Douglas-fir (Pseudotsuga menziesii) and ponderosa pine (Pinus ponderosa) into sagebrush communities is occurring in the Northern Rocky Mountain region. Removal and restoration treatments are often proposed to manage this issue, mainly prescribed fire, mechanical destruction, and/or herbicide use. Several contextual factors may affect public level of acceptability for such treatments. The issue frames used to present this problem to …

Evaluation Of Macroinvertebrates As A Food Resource In The Assessment Of Lotic Salmonid Habitat, Nicholas P. Weber

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Criteria used to characterize lotic salmonid habitat are often based on observed correlations between physical habitat characteristics and salmonid abundances. A focus on physical habitat features ignores other habitat components, such as an adequate supply of food that set the physiological limitations on salmonid growth and survival. This study outlines the development of a habitat assessment approach that focuses on how invertebrate food availability interacts with stream temperatures to determine salmonid growth potentials. Abundances of benthic and drifting invertebrate communities, stream temperatures, and juvenile steelhead trout (Onchorhynchus mykiss gairdneri) summer growth rates and abundances were measured within 10 …

Taste Sensitivity To 6-N-Propylthiouracil (Prop) As A Biological Marker For Vulnerability To Stress In Mothers And Children, Deann Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Some people are genetically more vulnerable to stress than others, leading them towards poorer outcomes following stressful events. Mothers' vulnerability to stress may, in turn, influence their children, leading their children towards poor outcomes as well. A biological marker of vulnerability to stress may indicate mothers who are at greater risk for experiencing parenting stress, depression, and less support of the infant's emotional development, and infants who are at greater risk for development of poor emotion regulation and behavior problems. Taste sensitivity to propylthiouracil (PROP) is proposed as a biological marker of stress vulnerability in mothers and children. This research …

Surgical Sterilization Of Coyotes To Reduce Predation On Pronghorn Fawns, Renee Seidler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Coyote (Canis latrans) predation accounts for the majority of neonatal pronghorn (Antilocapra americana) mortality in many areas and may influence local population declines. Current techniques used to manage coyote predation on wildlife species generally focus on lethal control methods. However, these methods may be controversial to the general public. Coyote sterilization is an alternative predation control method which is more acceptable to the public and has been shown to be effective in reducing sheep predation. We hypothesized that surgical sterilization of coyotes may increase pronghorn fawn survival; in the same way it reduces coyote predation on …

Evolutionary Consequences Of The Introduction Of Eleutherodactylus Coqui To Hawaii, Eric Michael O'Neill

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The introduction of a species to areas outside its native range can result in ecological and genetic changes of evolutionary significance. The frog Eleutherodactylus coqui was introduced to Hawaii, from Puerto Rico, in the late 1980s and has lost genetic variation in mitochondrial DNA. The extent to which founder effects have influenced phenotypic variation in the introduced range is unknown. In this study I compared phenotypic variation in life-history traits, advertisement calls, and stripe patterns among introduced and native populations of the frog Eleutherodactylus coqui. I also conducted laboratory experiments to determine the influence of genetics and temperature on …

Patch-Scale Effects Of An Invasive Ecosystem Engineer On The Structure And Function Of A Eutrophic Stream, Samuel J. Hochhalter

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Recent theoretical and technological advances in ecosystem science have dramatically expanded the ways in which scientists can pursue and explore ecological questions. For my thesis research, I integrated the recent theoretical concept of organisms as ecosystem engineers with the relatively recent development of stable isotope tracer tests to ask the question: how does the invasive common carp affect stream ecosystem structure and function? To investigate the structuring role of carp, I measured autotroph seasonal distribution and abundance and macroinvertebrate seasonal abundance and diversity within two stream reaches in Spring Creek, Utah, USA; one with low carp biomass (LCB) and one …

Linking Space Use And Behavior In Clark's Nutcracker: An Explanation For Seasonal Variation In Space Use, Teresa J. Lorenz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Clark's Nutcrackers (Nucifraga columbiana) are important seed dispersers for at least 10 species of conifer in western North America and are obligate mutualists for the subalpine tree, whitebark pine (Pinus albicaulis). Despite the important role they play in forest regeneration, space use by nutcrackers has not been formally studied. Several hypotheses exist to explain their year-round space use patterns. I tested one hypothesis that Clark's Nutcrackers migrate altitudinally between summer and autumn in one population in the Cascade Range, Washington. In 2006 and 2007, I compared seasonal differences in summer and autumn space use by 26 …

Speciation, Species Concepts, And Biogeography Illustrated By A Buckwheat Complex (Eriogonum Corymbosum), Mark W. Ellis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The focus of this research project is the complex of infraspecific taxa that make up the crisp-leaf buckwheat species Eriogonum corymbosum (Polygonaceae), which is distributed widely across southwestern North America. This complex provides an ideal taxonomic group for research into population relationships and speciation. To avoid unnecessary debates about taxonomic validity or contentious issues regarding appropriate species definitions, the historical evolution of the species concept is first reviewed in detail, demythologizing an often-assumed species problem. Following that review, the E. corymbosum complex is examined specifically.

Although eight varieties of E. corymbosum are currently recognized based on morphological characters, this group …

Mycorrhizae In Sagebrush-Steppe Community Restoration: Mycorrhizal Dependency Of Invasive And Native Grasses With Intraspecific And Interspecific Competition, Dara S. Scherpenisse

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mycorrhizae have been used in restoration for decades. However, studies assessing the use of mycorrhizae in Bromus tectorum-invaded areas of the Great Basin are limited. Two greenhouse pot experiments were conducted to assess the role of mycorrhizae in sagebrush restoration.

The first objective (Chapter 2) was to determine the response of Pseudoroegneria spicatum, Elymus elymoides, and B. tectorum to mycorrhizal symbiosis by altering phosphorus, density, species, presence of mycorrhizae and water levels in a 5 factor design. To assess the mycorrhizal response, a variety of morphological and physiological traits were measured, such as tissue P concentration, specific …

Prediction Of Protein Function And Functional Sites From Protein Sequences, Jing Hu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

High-throughput genomics projects have resulted in a rapid accumulation of protein sequences. Therefore, computational methods that can predict protein functions and functional sites efficiently and accurately are in high demand. In addition, prediction methods utilizing only sequence information are of particular interest because for most proteins, 3-dimensional structures are not available. However, there are several key challenges in developing methods for predicting protein function and functional sites. These challenges include the following: the construction of representative datasets to train and evaluate the method, the collection of features related to the protein functions, the selection of the most useful features, and …

The Four-And-A-Half Lim Domain Protein 2 Regulates Vascular Smooth Muscle Phenotype And Vascular Tone, Nicole A. Neuman, Susan Ma, Gavin R. Schnitzler, Yan Zhu, Giorgio Lagna, Akiko Hata

Biology

In responsetovascular injury, differentiated vascular smooth muscle cells (vSMCs) undergo a uniqueprocess knownas“phenotype modulation,” transitioning from a quiescent, “contractile” phenotype to a proliferative, “synthetic” state. We have demonstrated previously that the signaling pathway of bone morphogenetic proteins, members of the transforming growth factor family, play a role in the induction and maintenance of a contractile phenotype in human primary pulmonary artery smooth muscle cells. In this study, we show that a four-and-ahalf LIM domainprotein 2(FHL2)inhibits transcriptional activation ofvSMC-specificgenesmediatedbythebonemorphogenetic protein signaling pathway through the CArG box-binding proteins, such as serum response factor and members of the myocardin (Myocd) family. Interestingly, FHL2 …

Hydration Changes Of Dna Binding By Klentaq And Klenow Measured By Osmotic Stress, John Tod Baker

Honors Capstones

No abstract provided.

Oxidative Stress Induced Hu Protein Expression In Deinococcus Radiodurans, Cara Bevinetto

Honors Capstones

No abstract provided.

Characterization Of The Catalytic Mechanism Of The Carboxyltransferase Component Of Escherichia Coli Acetyl-Coa Carboxylase Leading To Rational Inhibitor Identification And The Development Of Enzymatic Mimics, Nabil K. Thalji

Honors Capstones

No abstract provided.

Rescuing Minute-Like Phenotypes Due To Rnai-Mediated Knockdown Of Nopp140 By Deletion Of P53 In Drosophila Melanogaster, Renford Cindass Jr

Honors Capstones

No abstract provided.

Cytokine Production During Microsporidia Infection Of Macrophages, Anne Louise Hotard

Honors Capstones

No abstract provided.

Cytokine Production During Microsporidia Infection Of Macrophages, Anne Hotard

Honors Capstones

No abstract provided.

Conservation Genetics Of Boelen‟S Python (Morelia Boeleni) From New Guinea: Reduced Genetic Diversity And Divergence Of Captive And Wild Animals, Joshua Lee Jordan

Honors Capstones

No abstract provided.

Determination Of Dispersal Patterns Of The Small-Mouthed Salamander (Ambystoma Texanum) In Eagle Creek Park (Indianapolis, In), Stacey Diane Summitt

Undergraduate Honors Thesis Collection

Urbanization and the increasing threat of habitat fragmentation are contributing to the significant declines in amphibian populations world-wide. Ambystomatid species are particularly susceptible to habitat fragmentation because they migrate yearly across upland forests to their breeding sites. Habitat changes could be altering the genetic structure in these species; however few studies have focused on this topic and more generally, examined the dispersal patterns of Ambystomatids. In 2003, Clark, Cripe, and Stachniw conducted a study on “Metapopulation Structure of Ambystoma texanum in Eagle Creek Park (Indianapolis, IN) and the Potential for Gene Flow.” They hypothesized that distance limits the dispersal of …

Binding Of Icer To Its Own Promoter As A Mode Of Cooperative Regulation, Craig Stephen Queenan

Theses, Dissertations and Culminating Projects

Inducible cAMP Early Repressor (ICER) is a regulator of cAMP signaling in the cell. ICER can be found in normal cells, but it is not present in tumor cells. The growth of these tumor cells is hampered when ICER protein is artificially reintroduced in these cells. Therefore, it is hypothesized that ICER manipulation could potentially be used as a new therapy for the treatment of cancer. Although much is known about the physiological role of ICER, little is known about the regulation of the gene. In this study, the negative autoregulation of ICER by binding to its own regulatory sequences, …

Down Regulation Patterns Of The Mutated Ret Receptor Tyrosine Kinase, Mai A. Soliman

Theses, Dissertations and Culminating Projects

REarranged during Transfection (RET) is a mammalian tyrosine kinase receptor involved in the signal transduction pathways during early embryonic kidney and enteric nervous system development. Activation of RET is mediated by one of the membrane associated co-receptors GFRal-4 and one of the four GFL family ligands. Following ligand binding, RET undergoes autophosphorylation followed by downstream activation of additional cell signaling proteins. However, less is understood about the down- regulation patterns of RET and of naturally occurring RET mutants and laboratory modified forms of RET. In this study, the role of the cytoplasmic domain in receptor processing and protein degradation was …

Environmental Regulation Of Dormancy Loss In Lomatium Dissectum (Apiaceae) Seeds, Melissa Scholten, Jacklyn Donahue, Nancy L. Shaw, Marcelo Serpe

Biology Faculty Publications and Presentations

Background and aims Lomatium dissectum (Apiaceae) is a perennial, herbaceous plant of wide distribution in Western North America. At the time of dispersal, L. dissectum seeds are dormant and have underdeveloped embryos. The aims of this work were to determine the requirements for dormancy break and germination, to characterize the type of seed dormancy, and to determine the effect of dehydration after embryo growth on seed viability and secondary dormancy.

Methods The temperature requirements for embryo growth and germination were investigated under growth chamber and field conditions. The effect of GA3 on embryo growth was also analyzed to determine the …

Imaging Of Rnase Mitochondrial Rna Processing Localization Using Fluorescent Microscopy, Bryan Marascalchi

Renée Crown University Honors Thesis Projects - All

This paper presents a method for imaging RNase mitochondrial RNA processing localization using fluorescent microscopy. RNase mitochondrial RNA Processing, MRP, is an essential ribonucleoprotein endoribonuclease that functions in the degradation of specific mRNAs that control the cell cycle. A mutation of the RNA component of RNase MRP leads to a genetic disorder called Cartilage-Hair Hypoplasia. This disorder results from the decreased rate of cell growth because the mutant cell no longer has the ability to assemble rRNA, and cyclin-dependent cell-cycle regulation no longer functions correctly. My Capstone Project will study the localization and regulation of RNase MRP so that we …

Evolution Of Craniofacial Architecture And Lateralization In Perissodini Scale-Eaters, Thomas A. Stewart

Renée Crown University Honors Thesis Projects - All

To understand the evolution of craniofacial asymmetry within the Perissodini tribe, a group of scale-eating fish found in Lake Tanganyika, we performed shape analysis on their craniofacial architecture, and applied a simple lever model to measure asymmetry in lower-jaw mechanics. We found that craniofacial asymmetries were the consequence of sided differences in size and shape of craniofacial elements, and that sided differences in shape predict the lateralization of force and speed of the lower jaw in derived species. Quantitative Trait Locus analysis in Lake Malawi cichlids identified a single locus of major effect for jaw laterality, the first genetic marker …

Molecular Analysis Of The Genetic Heterogeneity Between Primary And Recurrent Glioblastoma, Anushi Shah

Renée Crown University Honors Thesis Projects - All

Introduction: Glioblastoma multiforme (GBM) is one of the deadliest forms of brain cancer, and affects more than 18,000 new cases each year in the United States alone. The current standard of treatment for GBM includes surgical removal of the tumor, along with radiation and chemotherapy. Despite these treatments, recurrence of GBM is extremely common, and once it recurs, the life expectancy is measured in weeks or months. One of the reasons for the deadly nature of the recurrent GBM is thought to be selection for therapy-resistant tumor cells. In this project, we sought to characterize the molecular changes in recurrent …

The Evolution Of Skull Form And Function Among The East African Cichlids Of Lakes Malawi, Victoria, And Tanganyika, Alyssa Mcintyre

Renée Crown University Honors Thesis Projects - All

An animal’s skeletal and muscular structures form a biological machine capable of interacting with its environment. When anatomical form changes the resulting modification in biomechanical function can allow it to occupy a new ecological niche. The cichlid fishes of the major East African Rift Lakes have been frequently regarded as one of the best know examples of adaptive radiations that have produced a large variety of skull shapes in an unusually short span of evolutionary time that has permitted the use of an extremely wide variety of feeding niches. I studied the anatomical diversity of this incredible lineage by dissecting …

The Geographic Distribution Of Polyploidy In A Pacific Northwest Plant, Megan A. Larson

Renée Crown University Honors Thesis Projects - All

Polyploidy is an important evolutionary mechanism of speciation in plants. Because polyploids may evolve cryptically, there can be several levels of ploidy in a species. The distribution of polyploid species is the first step in understanding the role of polyploidy in plant speciation. I examined the geographic distribution of polyploidy in Heuchera cylindrica (Saxifragaceae) by using flow cytometry to determine the ploidy level of 595 individuals from 39 populations spread across the geographic range of the species. Only single cytotype populations of diploids or tetraploids were found, and no triploids were observed. In contrast to other studies of polyploid distribution, …

Characterization Of The Human Mixed Lineage Leukemia Protein Homolog Set1 In Saccharomyces Cerevisiae, Illona Savich

Renée Crown University Honors Thesis Projects - All

Abstract not Included

A Community Ecology And Stable Isotope Study Of Plankton, Macroinvertebrate, And Fish Communities Surrounding Groundwater Vents In Lake Huron, Michigan, Thomas Garrison Sanders Jr.

Masters Theses

Extreme environments can create ecotones with uncharacteristic physicochemical conditions and ecological communities. Recently, several submerged sinkholes were discovered in Lake Huron where hypoxic groundwater that is rich with dissolved ions intrudes into surrounding lake water. Researchers have documented large growths of cyanobacteria and chemosynthetic bacteria surrounding these groundwater vents, but little is known if this production is utilized by upper trophic level organisms and how the environmental conditions affect local community density and diversity. My objectives were threefold: (1) I wanted to confirm the presence and describe the nature and extent of chemical and physical gradients in the sublacustrine sinkhole …