Biology Commons^™

Monitoring Temporal Trends In Catostomidae Larvae In Large Sized River Tributaries, Kellie Nicole Hanser

Masters Theses

Large river ecosystems can support a complex network of tributaries that provide optimal habitat for fish reproduction. Anthropogenic alteration of rivers and tributaries has been shown to have adverse effects on river fish communities, but few studies have focused on the effects river regulation may have on the reproduction of native suckers (Family Catostomidae). In this study, I evaluated differences in biotic and abiotic factors associated with catostomid reproduction between tributaries of an altered and free-flowing river. I conducted ichthyoplankton sampling using drift nets and larval push nets in tributaries of the Illinois River, which is regulated for navigation, and …

Bigheaded Carp Spatial Reproductive Dynamics And Population Genetics In Large River Tributaries, Samuel J. Schaick

Masters Theses

Fisheries managers are devoting considerable effort, time, and funding towards limiting the spread of invasive Bighead and Silver (bigheaded) Carp. A better understanding of factors that influence spatial patterns of bigheaded carp reproduction can help fisheries managers prevent their spread. To examine factors that influence spatial patterns of reproduction, we sampled ichthyoplankton using drift nets and larval push nets in three tributaries of the Illinois and Wabash Rivers March-September 2016-2018. We compared relative abundances of bigheaded carp eggs and larvae among tributaries using catch per unit effort (CPUE). Abiotic data were analyzed from individual study tributaries and pooled among tributaries …

Aquatic Plants And Their Application To Successful Floating Treatment Wetlands, Katherine May Mazanec

Masters Theses

“This research aims to mitigate eutrophication of freshwater habitats affected by urban stormwater runoff. Two highly impacted urban ponds near the Missouri S&T campus in Rolla were the focus of this research on the application of floating treatment wetlands (FTWs). An FTW consists of a man-made floating mat that is planted with emergent or floating macrophytes. The plants grow on the mat and their roots extend into the water column below the mat. Plant tissues, especially roots in direct contact with the water, take up nutrients, act as biofilm growth sites, and may facilitate precipitation of nutrients. With urbanization, ponds …

The Implementation Of Qpcr Beach Monitoring Methods: Analysis Of A Multi-Lab Validation Study And The Role Of Environmental Parameters On A Comparison Of Colilert And Qpcr Methods, Molly J. Lane

Masters Theses

Public beaches are routinely tested for potentially pathogenic bacteria to protect beachgoers from possible illness. An EPA approved method, Colilert™, used for testing E. coli in recreational water requires 18 – 22 hours before a result is reported but, recreators have already contacted unsafe water before the beach is closed. My study focused on a U.S. EPA proposed qPCR method (Draft Method C) to quantify E. coli in recreational waters that can provide same-day results. In Chapter 2, I examined the calibration procedure used to validate Draft Method C and compared standard curve intercept and slope estimates calculated with a …

Impacts Of Shoreline Restoration And Source Of Nutrient Enrichment On Macrophytes And Epiphytic Algal Communities, Paige Marie Kleindl

Masters Theses

Macrophytes and their epiphytic algal communities are integral for optimizing littoral ecosystem functioning in lakes. Epiphytic algae’s placement on the plant’s surface can reduce light and nutrient availability (i.e., nitrogen and phosphorus) for the host macrophyte. Macrophyte and epiphytic algal proximity complicates these primary producer group interactions and responses to bioavailable nutrients in the water column or porewater. For example, epiphytic algae may have a competitive advantage over surface water nutrients compared to macrophytes, which may have a competitive advantage over porewater nutrients via root systems.

Muskegon Lake’s industrial history and designation as an Area of Concern prompted shoreline restoration, …

Habitat Use Of The Climate-Sensitive Snowshoe Hare (Lepus Americanus) In The Manistee National Forest In Michigan’S Lower Peninsula, Spencer D. West

Masters Theses

Snowshoe hares (Lepus americanus) are a wide-ranging lagomorph that are important forest herbivores and a popular game species throughout their range. Across the southern boundary of their geographic range, snowshoe hares are experiencing population declines and possible extirpation due to increased predation pressure driven by climate change induced camouflage mismatch, competition for forage, degraded and fragmented habitat. One method of reversing the negative trends in snowshoe hare distribution is to increase and improve available hare habitat. A specific habitat analysis for local regions will most effectively advise managers how to target habitat management. I radio-collared 11 snowshoe hares in the …

Pcr Analysis On The Effects Of Alpha Synuclein Treatment On C6 Rat Glioma Cells, Michael John Helmus

Masters Theses

Multiple System Atrophy (MSA) is a rare neurological disease that mainly implicates the neuronal protein, alpha synuclein, as being centrally involved in MSA pathology. Despite synucleinopathy dogma, little is known about alpha synucleins role in MSA pathogenesis. The Ide laboratory previously conducted an Affymetrix gene expression study utilizing the post-mortem pons tissue from eight individuals with MSA and five individuals without any known neurological disorders. One conclusion from that study was that downregulation of numerous mitochondrial homeostasis related genes had occurred. It is hypothesized that alpha synuclein can perturb mitochondrial homeostasis through direct interaction with mitochondria. This study utilized Reverse …

Phylogenetic Analysis Of Palisota (Commelinaceae) Using Chloroplast And Nuclear Regions, Alexandra H. Crum

Masters Theses

Palisota (Commelinaceae) differs from other Commelinaceae genera in androecial and pollen characters, a fleshy berry-type fruit, and anatomical characters. Palisota has been divided into two sections based on uniseriate vs. biseriate seed arrangement. Molecular phylogenetic analyses in Commelinaceae have placed Palisota near the base within the family, although its precise position is unclear. We sequenced chloroplast (matK, rbcL, rps16, and trnL-trnF, psbI-psbK, atpB-rbcL, atpF-atpH and psbA-trnH intergenic spacers) and nuclear (AT103) regions in 15 of approximately 26 species of Palisota and 15 outgroup species. Phylogenetic analyses were performed using maximum likelihood and Bayesian methods, with the …

The Association Between Dietary Niche Variation In Rodents And Climate Change Across The Paleocene-Eocene Thermal Maximum, Hannah K. Vermeer

Masters Theses

Mammalian teeth play a crucial role in food acquisition and breakdown and are therefore closely tied to dietary niche. This study reconstructed the diet of early Paleogene paramyid rodents across the Paleocene-Eocene Thermal Maximum (PETM) climatic event in an effort to understand the role of climate in mammalian dietary niche change. Dietary niches were quantified using three dental topographic measures: Dirichlet normal energy, relief index, and orientation patch count rotated. A Kruskal-Wallis test was conducted over eight time periods to determine if each of the dental topographic measures (i.e., diet) varied over time. Regression analysis of these measures with climatic …

An Assessment Of Periphyton Communities In Five Upper Peninsula Streams, Mi, Aaron Jeffrey Christiansen

Masters Theses

This project quantified lotic periphyton community change from May 2018-October 2018 in five, first and second-order Lake Superior tributary streams. Using periphyton communities, land use, geology, and abiotic factors pertinent to stream ecosystems we evaluated periphyton community succession. Using periphytometers, periphyton communities were collected and identified monthly to quantify community succession. Total phosphorus and total Kjeldahl nitrogen were measured monthly during the study. Depth, velocity, specific conductivity, and canopy cover were measured to quantify some of the physical factors within the streams. Nonmetric multidimensional scaling analysis indicated that the periphyton communities were similar between streams (ADONIS p-value =0.73) but was …

Habitat Use And Tributary Occupancy Of The Threatened River Redhorse (Moxostoma Carinatum) In The Grand River, Mi, Usa., Nicholas Michael Preville

Masters Theses

The resiliency of our aquatic ecosystems hinges on our ability to protect the native species that reside within them. The river redhorse (Moxostoma carinatum) is one such example and populations have become low enough to warrant listing by the State of Michigan. Causes of decline include overfishing, habitat alteration, and lack of knowledge of basic life-history attributes including their use of non-spawning habitat and spawning locations. In order to understand the river redhorse’s habitat use we implanted 15 individuals with radio transmitters and tracked their locations over the course of a summer. Tagged river redhorse were found to …

Dynamic Carbon Cycling In Muskegon Lake – A Great Lakes Estuary, Katie Lynn Knapp

Masters Theses

Ecosystem metabolism is the coupling of carbon and oxygen through photosynthesis and respiration. Gross primary production (GPP) is the carbon fixation by photosynthesis, ecosystem respiration (R) is carbon remineralization by bacterial and plankton respiration, and net ecosystem production (NEP) is the balance. Metabolism estimates determine if ecosystem is a sink or source of carbon to the atmosphere. When a lake has a positive NEP, or the GPP:R ratio is greater than 1, it is considered autotrophic and less carbon is being lost to the atmosphere than taken in, whereas if NEP is negative (GPP:R-1d^-1, respectively and the BOD …

Biological Invasions On A Large Scale: Investigating The Spread Of Baby’S Breath (Gypsophila Paniculata) Across North America, Sarah K. Lamar

Masters Theses

Invasive species are a serious threat to biodiversity worldwide. While the impacts of invasive species increase annually, many gaps in our understanding of how these species invade, adapt, and thrive in the novel ecosystems into which they are introduced remain. This thesis aimed to add to our knowledge of invasion science, using the perennial forb Gypsophila paniculata as a study system. Gypsophila paniculata is a shrub native to the Eurasian steppe that was introduced into North America in the late 1800’s. After introduction, G. paniculata quickly spread and now occupies diverse ecosystems across N. America. In chapter II of this …

Using Landscape Genetics To Understand Connectivity Of An Island Population Of Eastern Massasauga Rattlesnakes (Sistrurus Catenatus), Nathan Kudla

Masters Theses

Populations that experience low levels of gene flow commonly display increased levels of inbreeding, lower genetic diversity, and reduced adaptive potential. Landscape genetics allows for spatial and genetic information to be analyzed simultaneously to better understand how the landscape influences gene flow. The eastern massasauga rattlesnake (Sistrurus catenatus) is a federally threatened viper found in wetlands throughout the Great Lakes region. Many remaining populations are small and isolated due primarily to habitat loss. Atypical from a range-wide perspective, eastern massasaugas on Bois Blanc Island (BBI), Michigan live in a relatively undisturbed landscape with a potential for high connectivity …

Evaluating Remote Site Incubators To Support Restoration Of Arctic Grayling In Michigan, Alan J. Mock

Masters Theses

Remote site incubators (RSIs) have been used to rear salmonid fish eggs along streams in the Pacific Northwest since the 1980s. Recently, the successful use of RSIs for Arctic Grayling Thymallus arcticus restoration in Montana has sparked a renewed interest to reestablish the species in Michigan. To support future reintroduction efforts of Arctic Grayling in Michigan, I evaluated RSIs in three Michigan streams during 2018 and 2019 using Rainbow Trout Oncorhynchus mykiss eggs (as surrogates for Arctic Grayling). My objectives were to: (1) compare hatching success between two different RSI designs (19-L vs. 265-L RSIs), and (2) test whether the …

Thermal Quality Explains Shift In Habitat Association From Forest To Clearings For Terrestrial-Breeding Frogs Along An Elevation Gradient In Colombia, Zachary Lange

Masters Theses

Tropical ectotherms are considered particularly sensitive to changes in the thermal environment from climate change and habitat alteration. Understanding how such species’ thermal physiology relates to their habitat associations in thermally heterogeneous landscapes may help us predict responses and develop sound conservation strategies for the future. We conducted a mark-recapture study of three terrestrial breeding anuran species (Pristimantis medemi, P. savagei, P. frater) in adjacent forest and anthropogenic clearings at field sites spread across seven elevations (415-1350 m asl) in the Colombian Andes. We also performed thermal preference and critical thermal maximum assays in the lab to investigate the relationship …

Astrogliosis In The Adult Zebrafish Olfactory Bulb During Repetitive Peripheral Damage, Jackson Scheib

Masters Theses

Traumatic brain injuries (TBIs), particularly if repetitive, cause massive disruptions of brain homeostasis, significant loss of neurons, and may result in death. Astrocytes are a type of cell that maintain brain homeostasis and neuronal health. Astrogliosis is a continuum of morphological and functional changes of astrocytes in response to damage. This can be neuroprotective or neurotoxic depending on the severity and type of injury. Global astrocyte scarring is typical of neurotoxic astrogliosis and is the source of secondary injury after TBIs. The adult zebrafish olfactory system is known for its capacity to recover from trauma, however, astrocytes in this system …

The Correlation Between Sleep And Lifespan In Drosophila Melanogaster, Joshua Randall Lisse

Masters Theses

”Adequate sleep is associated with an individual’s health. Too little sleep is associated with many health problems, including cardiovascular disease, obesity, and a general increase in all-cause mortality. Yet the molecular changes that link poor sleep and changes in health are still not well understood. Individuals have a unique daily need for sleep, and deviations from the animal’s regular sleeping patterns can be indicative of, or result in, underlying changes in its health. Therefore, we hypothesize that changes in the sleep architecture in Drosophila melanogaster reflect changes in the fly’s health.

We determined sleep architecture in wild-type male flies over …

Characterization Of Chromosomal Translocations In A Group Of Killifish Species By Using Genome-Wide High-Density Snp Mapping Approach, Naznin Sultana Remex

Masters Theses

"The role of chromosomal rearrangements in reproductive isolation and introgression between species is poorly understood. In heterozygous form, rearrangements may directly interrupt meiotic progression leading to partial sterility/subfertility (underdominance) or may suppress local meiotic segregation (recombination suppression). Such unbalanced meiotic segregation may also result in reproductive isolation and play roles as a driving force of speciation. The objective of this study was to gain insight into the pattern of chromosomal rearrangements in two closely related killifish species in the genus Fundulus (F. notatus, and F. olivaceus) by constructing genetic linkage maps using high-resolution single nucleotide polymorphism (SNP) …

An Assessment Of Night Time And Seasonal Electrofishing In The Lower Wabash River, Eric Christopher Hine

Masters Theses

Large rivers are highly important systems; being exploited both commercially and recreationally. Because of this usage by humans, close monitoring of the ecology of theses rivers is of the utmost importance. The Long-Term Electrofishing project (LTEF) monitors the fish communities of the Illinois, Mississippi, Wabash, and Ohio rivers using day time, pulsed-DC electrofishing during the late Spring through the early Fall each year. Given that previous studies have noted diel and seasonal changes in catch and composition of fish communities, the addition of night time electrofishing may be beneficial to the overarching goals of the LTEF. This study sought to …

Effects Of Fire Season And Temperature On A Spotted Knapweed (Centaurea Stoebe) Infested Grassland, Zachery T. Pitman

Masters Theses

Invasive species, including the non-native forb Centaurea stoebe (spotted knapweed), constitute an imminent threat to degraded and restored native prairies. Considering the major threat that C. stoebe poses to imperiled prairie ecosystems, I examined the effectiveness of fire as a control agent of C. stoebe and (±)-catechin. I conducted a 2-year experiment in part of a restored tallgrass prairie community at Pierce Cedar Creek Institute in Barry County, Michigan between May and August of 2016 and 2017. My experiment consisted of individually burning 60 1-m² plots with a propane torch to achieve high (316° C) and low (103° C) temperatures …

Occupancy And Detection Of Yellow Perch In Great Lakes Coastal Wetlands, Kaitlyn M. Dykstra

Masters Theses

Accurately estimating the distribution of a species is important for managing sustainable populations of fishes. The Yellow Perch Perca flavescens is an important sport fish in the Great Lakes region and one of the most abundant fishes in Great Lakes coastal wetlands, which they commonly use for spawning and nursery habitat. Many fisheries management decisions are based on results from sampling fish assemblages, but these methods rarely account for incomplete detection (i.e., presence of a species that is not detected by sampling), which could create biased results. We applied the method of occupancy modeling, which accounts for incomplete detection, to …

Impacts Of Sediment Dredging On Phosphorus Dynamics In A Restored Riparian Wetland, Kimberly Oldenborg

Masters Theses

Global reductions in biodiversity and water quality are having major consequences for ecosystem health and societal well-being. The restoration of riverine floodplains and wetlands provides an ideal opportunity to increase biodiversity and water quality because their hydrologic connectivity to adjacent streams and rivers promotes the formation of heterogeneous habitat while also facilitating their functioning as a nutrient sink, in general. However, many historic floodplains and riverine wetlands have been drained for the creation of agricultural land, resulting in an accumulation of nutrients in the soils. Therefore, restoration practices that hydrologically reconnect former agricultural land to an adjacent stream or river …

Assessment Of Invasive Gypsophila Paniculata Control Methods In The Northwest Michigan Dunes, Emma K. Rice

Masters Theses

Gypsophila paniculata is an invasive species in Michigan’s northern lower peninsula and a problem invasive in much of the northern United States and Canada. Gypsophila paniculata readily outcompetes native plants in sandy, well-drained soils due to its deep taproot, which allows access to scarce resources. It reproduces and disperses mainly by seed, but the phenology of seed maturation is poorly understood. Gypsophila paniculata is of particular concern in lakeshore dunes because the areas where it is most dense are also populated by several endemic and threatened species. Despite many years of intensive management, high densities of G. paniculata persist …

Estimating Components Of Stream Metabolism Using The Free Water Dissolved Oxygen Method, Jay R. Zuidema Jr.

Masters Theses

Stream ecosystem metabolism is commonly measured in stream ecology studies in order to understand the functioning of the stream ecosystem and as an indicator of stream health. One common method for gathering the time series data required to estimate stream metabolism is the free water dissolved oxygen method, which involves measuring dissolved oxygen in freely moving water. This is accomplished by taking measurements at a single location (one-station monitoring method) or at two locations (two-station monitoring method). In conjunction with these data, a process-based model of dissolved oxygen dynamics is used to estimate gross primary production, respiration, and net production. …

Investigating Erosion And Ecological Impacts To An Urban Coldwater Stream Using Multiple Techniques, Daniel T. L. Myers

Masters Theses

Sediment pollution is a major cause of stream degradation. Our objectives were threefold. First, we assessed the impacts of environmental stressors on the structure of fish and macroinvertebrate communities across a gradient of agricultural to urban land cover in a coldwater tributary of the Grand River, Michigan, USA called Indian Mill Creek. We found that instream woody debris, streambed substrate, riffle and pool habitat variability, and riparian conditions affected aquatic macroinvertebrates along an agricultural to urban land cover gradient. We also found that variation in fish community assemblage was driven largely by stream flow and temperature regimes and could be …

Environmental Factors Influencing Amphibian Community Assemblage In Dune Wetlands On The Lake Michigan Coast, Alex H. Jouney

Masters Theses

Wetlands in dune landscapes provide important breeding habitat for amphibians along the Lake Michigan Coast. Unfortunately, these unique habitats and the corresponding amphibian metapopulations are understudied and threatened. We assessed amphibian species richness and terrestrial habitat type in 16 permanent and ephemeral wetlands along the coast of Lake Michigan in Grand Haven, MI. Wetland area, terrestrial habitat type, depth, hydroperiod, shade, and degree of isolation were measured from April to September of 2017. Nine species of amphibian were found; Green Frog (Rana clamitans melanota) and Spring Peepers (Pseudacris crucifer crucifer) were most abundant and Fowlers Toad …

Genetic Structure Of Invasive Baby’S Breath (Gypsophila Paniculata) Populations In A Michigan Dune System, Hailee B. Leimbach-Maus

Masters Theses

Invasive species can reduce biodiversity of a system by outcompeting native species for resources, changing the physical characteristics of a habitat, and altering natural disturbance regimes. Coastal sand dune ecosystems are dynamic with elevated levels of disturbance, and as such they are highly susceptible to plant invasions. The topography, geographic distribution of preferred habitat, and disturbance regime in an ecosystem can influence where an invasive plant becomes established, its dispersal patterns, and how densely it grows. One such invasion that is of major concern to the Great Lakes dune systems is baby’s breath (Gypsophila paniculata). The invasion of …

Validation Of A Water Quality Index For Lake Erie, Vaclava Hazukova

Masters Theses

This study validates a water quality index based on a diatom total phosphorus transfer function for monitoring of the Lake Erie’s pelagic zone. Lake Erie is again under the threat of cultural eutrophication, mostly due to the runoff of nutrients from the surrounding farmlands. Therefore, it is an issue of high importance to continue monitoring efforts in Lake Erie to assess further deterioration or progressive changes due to the restoration management practices. Diatom-biomonitoring represents one of the efficient and well-crafted tools to assess the actual conditions. However, indices of water quality based on diatom transfer functions are often used without …

Home-Range Dynamics And Resource Selection Of American Marten (Martes Americana) In Michigan’S Northern Lower Peninsula, Angela Kujawa

Masters Theses

American marten (Martes americana) are typically associated with mature coniferous forests. Marten were extirpated from Michigan’s Lower Peninsula due to human impacts, such as fire, logging, and over-harvest. Little is known about the resource selection and distribution of marten in Michigan’s northern Lower Peninsula since their reintroduction in 1985-86. Resource selection functions are valuable tools to estimate the relative probability an animal will utilize an area and predict where they may occur. When creating a resource selection function, potential sources of variation in data collection methods and wildlife populations should be considered to ensure accurate results. We sought …