Biology Commons^™

Characterization Of Bpa Sensitive Strains In C. Elegans, Giulianna I. Escobar

Honors Theses

Bisphenol A (BPA) has been present in our environment since 1891 when it was first synthesized by Aleksandr Dianin. BPA has since been a topic of interest due to the possibility of diseases associated in human consumption of the chemical. Interestingly, Caenorhabditiselegans, commonly known as C.eleganshave shown to be able to tolerate the chemical. Thisorganism is an advantageous model organism for research since they are simple organisms to study, cheap, produce a large brood size, and have a short life cycle. Previously a forward genetic screen was done to isolate 2000 healthy strains in order to determine which strains showed …

Comparison Of Cardiac Muscle Between Male And Female Rats With Exercise And Aging: Analyzing Vitals, Gdnf Expression, Ngf Expression, Rna Expression, Sympathetic Innervation, Parasympathetic Innervation, And Sensory Innervation, Katelyn Kurrie

Honors Theses

The direction of my research-based thesis answers the question of how exercise affects the cardiovascular system with aging in male and female rats. My study would highlight the important differences of the cardiovascular system of both sexes which could lead to sex-specific insight on the cardiovascular disease epidemic which prevails as the most common cause of death in the United States. The studies completed will test the hypothesis: neurotrophic factor will be higher in females than males due to the higher presence of estrogen in females. The trophic factor is predicted to increase in both males and females with regular …

An Examination Of Barriers And Determinates Impacting The Healthcare Of Kalamazoo County's Transgender And Non-Binary Young Adult Population, Tyler Signorella

Honors Theses

Historically non-binary and transgender individuals have faced and continue to face a unique set of obstacles and challenges in seeking and receiving general healthcare. Within the US this is well documented on a national level. In this exploratory study we will seek to understand the experience of young adults in Kalamazoo County comparing their perspectives to the already established pool of information. This will be accomplished through surveying emergent adults identifying as either transgender or gender non-binary within Kalamazoo County and then synthesizing this data into an analyzable collective format.

The Design And Validation Of A Qpcr-Based Approach To Cell Quantification Of Fungal-Algal Symbioses, Isabelle Katherine Garlotte

Honors Theses

Symbiotic relationships are extremely common in virtually all species. These relationships between organisms, particularly mutualistic symbioses, can have an incredibly large impact and can greatly affect the evolution of the species involved. Of particular interest is the suspected mutualistic relationship between green algae and fungi that may hold key evidence of how terrestrial plants evolved. In this experiment we established a method of quantifying the cells of each species involved in these symbioses through qPCR analysis to determine if the relationships are truly mutualistic. We developed a system for using DNA copies as a proxy for cell count in co-cultures …

A Summary Of Current Research Into Neurodegenerative Disorders Using Drosophila Melanogaster, Chase Cortese

Honors Theses

Neurodegenerative disorders such as Alzheimer’s disease are characterized by damage to neural cells causing widespread neurological deficits. Historically, these diseases were deemed as inevitable declines in cognitive and neurological function that occurred with aging. Recent research has revealed, however, that these diseases have molecular bases allowing potential clinical intervention. The groundbreaking discoveries have been made using differing model organisms, which can replicate the phenotype and physiological cause of these disorders. One major model organism that has been used is the fruit fly, Drosophila melanogaster. They have served various roles in elucidating gene pathways and neurophysiological bases seen in these diseases. …

High-Efficiency Transformation Of Yeast By Electroporation, Lilly Ruell

Honors Theses

This paper analyzes and optimizes efficiency in the yeast transformation protocol using electroporation. Three variables were tested for optimization, they are the following: DNA concentration, cell density and electroporation voltage. Further verification of transformation was done through the analyzation of HPLC data to ensure protein production. The results conclude that DNA concentration was the most important dependent variable for transformation efficiency. A voltage of 2000V is the optimal condition to achieve efficient yeast transformation. Cell density had no observational difference in transformation efficiency at the range of DNA concentration necessary for research use. Improving this efficiency of the yeast transformations …

Investigation Of Bax-Vdac Interactions And Their Role In Apoptosis, Marie Merrell

Honors Theses

Apoptosis is the process of programmed cell death. Increasing knowledge of this biological process can lead to understanding of neurodegenerative diseases and cancer alike. In mammals, this process occurs through mechanisms that are localized to the mitochondria. The release of cytochrome c is from the mitochondrial outer membrane (MOM) is regulated by pro and anti-apoptotic Bcl-2 family proteins. If the latter are successful, then cytochrome c’s release into the cytosol activates a caspase cascade, resulting in apoptosis of the cell. Pro-apoptotic Bax is present in complexes that contain voltage dependent anion channels (VDACs). We hypothesized that in healthy cells, VDACs …

Phenotypic Analysis Of S. Aureus Strains From University Student Health Centers And Environmental Controls, Antonio Teixeira

Honors Theses

Methicillin-resistant Staphylococcus aureus (MRSA) is a group of pathogenic bacterial strains resistant to a class of antibiotics that is a major cause for concern in health care systems. There is a lack of study in whether health care centers are reservoirs for these bacteria, especially within developed countries. Five environmental swab samples were collected from five different university health care centers across the region, and 16 swab samples from a general university environment. Any isolated bacterial strains collected underwent five biochemical tests (mannitol fermentation, DNase activity, oxidase activity, catalase activity, and coagulase activity) to preliminarily identify S. aureus bacteria. 24% …

Investigating The Efficacy Of Dna Damage With Bleach In Forensic Laboratories And At Crime Scenes, Alyssa Tuccinardi

Honors Theses

Household/commercial bleach (6% NaOCl, sodium hypochlorite) degrades DNA through oxidative damage, production of chlorinated base products, and cleavage of DNA strands (breaking it into smaller and smaller fragments). The presence of these lesions significantly impacts the ability to generate a full genetic profile from an evidentiary sample. In fact, knowledge of the damaging effect of bleach on DNA is the basis for its use in forensic laboratories to clean workbenches and prevent cross-contamination of samples between cases. Additionally, bleach is used intentionally by criminals to clean up crime scenes and destroy DNA evidence. A previous study demonstrated that bleach has …

The Relationship Between Glucocorticoids And The Humoral Immune Response To Mycoplasma Gallisepticum Challenges In Eastern Bluebirds, Joshua Smith

Honors Theses

Numerous studies have examined relationships between adrenal glucocorticoids and the immune system’s ability to fight disease. The relationship can vary, with glucocorticoids having either stimulatory or inhibitory effects. The pathogenic bacterium Mycoplasma gallisepticum (MG) elicits an adaptive immune response in birds, in which B cells produce MG-specific antibodies to fight the infection and prevent reoccurrence. Previous research found that Eastern Bluebirds that produce the most antibodies in response to MG infection also have the highest glucocorticoid levels. This finding led to the current study investigating whether corticosterone, the primary glucocorticoid in birds, stimulates production of antibodies in response to immune …

Ectomycorrhizal Fungi And Effects Of Soil Microbes Associated With Slash Pine Encroachment Into Native Longleaf Pine Habitat, Madison Brooke Woodruff

Honors Theses

Biological invasions can cause substantial changes to the environment: indigenous species can be reduced or even eliminated, soil characteristics shifted, and nutrient cycles altered. Ectomycorrhizal (ECM) fungi are thought to be key biological controllers of some plant invasions, especially benefiting Pinus species in invasions at exotic sites, but less is understood about the role of ECM fungi and other soil microbes in encroachment by one plant species into the habitat of another in their native ranges. In this study, soil was collected from three habitats in southern Mississippi, USA: native slash pine maritime forest, longleaf pine savanna encroached by slash …

Population Genetics Of A Recent Range Expansion By The Southern Pine Beetle, Dendroctonus Frontalis, Into The Northeastern United States, Megan Stubbs

Honors Theses

Population genetics as a field of study aims to determine the genetic variation among individuals in a population, and differences among populations. Certain population genetic analyses can provide such information and be used to better understand the biological aspects to a species’ expansion beyond its native range. The southern pine beetle (SPB), Dendroctonus frontalis, has become an invasive pest to pine forests in northeastern United States with its recent range expansion. Nine microsatellite loci were first developed and then used in analyses. To determine what the genetic variation is among individuals in SPB populations across its entire range, including …

Effects Of Invasion By Plants And Beetles On Roots And Mycorrhizal Fungi Of Plantation Scots Pines In Poland, Meghan M. Van

Honors Theses

Biological invasions can cause significant changes to the environment in which they occur. One of the main changes that is caused is how invasive species can disrupt mutualisms between native species in ecosystems. The mutualism between mycorrhizal fungi and plants is one of the most important mutualisms that a plant forms. This mutualism is very important because it is the source of many nutrients that the plant needs. This study took place in a Scots pine (Pinus sylvestris) plantation in northeastern Poland, and aimed to determine the effects of plant and beetle invaders on ectomycorrhizal (ECM) fungi and …

Assessment Of Oral Motor Activity Variables During Consumption Of Chocolate Using Surface Electromyography: Effects Of Variation In Cocoa Solid Content, Kara Elizabeth Cook

Honors Theses

The aim of this experiment is to assess how a wide range of cocoa content in different types of chocolate samples effects oral motor activity for mastication events, along with the time between consumption and swallowing. A prior study assessed individual oral motor activity using surface electromyography (sEMG) for mastication events while eating four different chocolate samples, and this information was used to determine which aspects of the masticatory process underlie differences in individual chewing behavior as well as whether subjects retain their general characteristic eating behavior across a variety of chocolate samples. The study found that with chocolate samples …

The Effect Of Truncated Complement Constructs On Biofilm Formation, Protease Production, And Pigmentation, Cara L. Cothern

Honors Theses

The msaABCR operon regulates virulence factors in Staphylococcus aureus, a Gram-positive commensal organism that colonizes healthy individuals but can also be a human pathogen. These virulence factors include biofilm development, pigmentation, and extracellular protease production. The operon consists of the msaB gene, which produces a coding transcript, the msaA gene and the msaC gene, which produce noncoding RNAs, and msaR, which produces an antisense RNA. The latter three transcript regions of the operon are referred to as untranslated regions (UTRs) and are essential for the function of the operon, but only msaB encodes a protein. The mechanism of …

A Comparison Of Egg Desiccation Tolerance And Development Under Different Temperatures For Three Common Aedes Mosquitoes, Shelby A. Hosch

Honors Theses

With the rise in global temperatures, invasive mosquito species like Aedes albopictus may be able to reach regions that were previously inhospitable to these species. Therefore, if A. albopictus were to potentially reach Puerto Rico, it would come into contact with the species of Aedes aegypti and Aedes mediovittatus in local containers, and it is unclear how the tropical temperatures and precipitation patterns would affect the co-occurrence of these three species. Egg desiccation and temperature dependent growth among the species were measured to test how these species hatched and developed during different humidity and temperature. It was hypothesized that there …

The Effects Of The Omega-3 Fatty Acids Docosahexaenoic Acid On Inm1 Gene Expression In Saccharomyces Cerevisiae, Haley Kang

Honors Theses

Bipolar disorder is a mental disorder associated with abnormal inositol levels. Preliminary studies show omega-3 fatty acids alter intracellular inositol levels; however, the cellular mechanism behind this process is unknown. Therefore, the focus of this study is to determine the effects of the omega-3 fatty acid docosahexaenoic acid (DHA) on the expression of INM1 which encodes inositol monophosphatase. Using yeast as our model system, cells were grown in varying concentrations DHA and the expression on INM1 was determined by RT-qPCR. The results show INM1 expression increased with increasing concentrations of DHA; thus, the effects of DHA on inositol levels may …

Novel Heterocyclic Arylidene Derivatives As Anticancer Agents Against U87 Human Glioblastoma, Benjamin H. Hiramoto

Honors Theses

The primary objectives of this interdisciplinary study were the synthesis of novel heterocyclic arylidenes and the investigation of their anticancer activity against U87 glioblastoma cell viability. Recently, novel hybrid derivatives have been considered as potential candidates for treating glioblastoma, demonstrating a synergistic anticancer effect in previous studies. 12 heterocyclic arylidenes with various functional groups, including halogens and boronic acid, were produced via a Knoevenagel condensation. These compounds and their starting reagents were then administered to U87 glioblastoma cancer cells at graded concentrations within a 12-well cell viability assay to determine each compound’s lethal concentration 50 (LC50). The LC50 of each …

Are Florida Manatees (Trichechus Manatus Latirostris) Wearing Their Teeth Beyond Functionality? Interspecific And Intraspecific Mesowear In Manatees, Nina Woodard

Honors Theses

Manatees (Trichechus spp.) are herbivorous aquatic mammals found in tropical and subtropical waters. At maturity, they possess only supernumerary molars (SM), with 5-8 in occlusion at each quadrant. Manatees exhibit a dental replacement system in which they shed old teeth anteriorly and erupt new teeth posteriorly. This adaptation is thought to have arisen to deal with abrasive foods. Mesowear (facet development on occlusal surfaces of teeth) increases from posterior (younger) to anterior (older) molars. Tooth functionality is linked to level of mesowear, with increased amounts resulting in decreased food-processing ability. Less functional teeth can result in an increase in feeding …

Synthesis Of An Arylidene Pyrazolone And Its Effects On Glioblastoma Cancer Cells, Joanna Deonarine

Honors Theses

The purpose of this research is to develop a new technique to synthesize a heterocyclic arylidene compound using fruit puree catalysis and investigate its anti-cancer activity on glioblastoma cancer cells. Recently, there has been interest in heterocycles due to their anticancer properties and they have been used in almost two-thirds of the novel molecular anticancer agents. Varying fruit purees were used to synthesize a novel hybrid arylidene pyrazolone from 3-methyl-1-phenyl-5-pyrazolone and 4-dimethylaminobenzaldehyde by modifying methodology developed by Dr. Murray. This arylidene pyrazolone was then tested for its anticancer activity on glioblastoma brain cancer cells using Dr. Smith’s 12-well cell viability …

Evaluation Of Anticancer Activity Of Heterocyclic Arylidenes On The U87mg Cancer Cell Line, Bernadette Flores

Honors Theses

Glioblastoma multiforme, is a type of brain cancer that develops from glial cells, which surround neurons and provide support and insulation. Previous investigation has shown that some heterocyclic compounds are key in improving the properties of anticancer drugs by enhancing lipophilicity, polarity, and other varying physiochemical features. Synthetic heterocyclic compounds used as anticancer drugs attempt to imitate naturally-occurring ligands and substrates so as to disturb the natural balance in cells. Testing was done to determine the anticancer abilities of hybrid compounds, heterocyclic arylidenes, containing various functional groups, including boronic acids, through a three-day testing process. These compounds were previous synthesized …

Organized Caudal Photoreceptors In The Medicinal Leech, Baylee Bancroft

Honors Theses

Visual systems are essential to an organism’s survival. There are a wide range of photosensory organs across the animal kingdom, varying by means of structure, complexity, and the way in which they transduce information. Regardless of variation, visual systems provide the organism with information regarding external stimuli based on how light interacts with surrounding matter. The medicinal leech, Hirudo verbana, is one of the many important model organisms of neurobiology as this segmented annelid possesses a relatively simple nervous system and a rudimentary visual system. The leech also exhibits a restricted range of quantifiable overt behaviors and is capable of …

Understanding Stem Instructors’ Experiences With And Perceptions Of Deaf And Hard Of Hearing Students: The First Step Towards Increasing Access And Inclusivity, Makayla Long

Honors Theses

Through an anonymous survey we analyzed Western Michigan University (WMU) STEM instructors’ experience with and understanding of teaching and interacting with Deaf and Hard of Hearing (HoH) students. The goal of this study was to capture the experiences of WMU STEM instructors and the resources available to them given their direct impact on Deaf/HoH students’ ability to succeed and receive a post-secondary education. The findings of this study support the claim that instructors are not well supported or aware of the needs of Deaf/HoH students, and do not have access to adequate resources to resolve the issue.

The first steps …

Glut5 And Fructose Metabolism Inhibition In A Simulated Small Intestine Environment, Isabella Trainor

Honors Theses

This thesis describes an experiment that was designed in order to obtain information that could be useful for treating individuals with HFI. The author hypothesized that MSNBA would inhibit GLUT5 and fructose metabolism in the small intestine. The final experimental design involves exposing a small intestine cell line to fructose and MSNBA. The cell line would be exposed to MSNBA over the course of three different periods, and data was intended to be obtained using western blotting and a fructose assay kit. Although the final experimental design project was not fully carried out due to circumstances surrounding COVID-19, a plausible …

Gender And Socioeconomic Disparities In Iatrogenic In-Hospital Torsades De Points, Bradley Reinoehl

Honors Theses

It has been well established for decades that women are at increased risk for torsades de pointes (TdP). Additionally, it has been well documented that patients of lower socioeconomic status (SES) tend to have inferior health outcomes compared to other patient populations. In this study we investigate the incidence of iatrogenic in-hospital TdP among these two demographic groups. Iatrogenic in-hospital TdP is a complex combination of medical issues and including danger from QT prolonging medications. In theory, a combination of identifiable, demographic risk factors coupled with specific clinical settings could be used to identify patients at high risk for iatrogenic …

Exploring Soil Texture Effects On Mustard Seed Meal Suppression Of The Weed Velvetleaf, Daheun Danielle Harning

Honors Theses

The use of mustard seed meal (MSM) as a biofumigant in managing weeds in agricultural settings has been well documented. Previous work with MSM has shown that soils with a higher sand content were better at weed suppression than soils with lower amounts of sand. It was hypothesized that the elevated sand content created more air space for volatile inhibitory compounds to diffuse and inhibit seed germination and growth. Although initial results from bioassays systematically testing the comparison of 5 differing levels of sand showed support for this hypothesis, further testing with micron-sized glass beads showed that loss of airspace …

Assay Development For Isolation And Characterization Of Anticancer Properties Of Marine Fungi, Kyra Ricci

Honors Theses

Metabolites from fungi have potential use in the drug discovery process and have been used in the past to develop therapeutic agents for human use. Initial characterization of potential therapeutic properties of fungi is thus an important first step in identifying novel therapeutic compounds. In the present study, marine fungi were isolated from Myrtle Beach and assayed for anticancer properties using the soft agar colony formation assay in a 3D in vitro cellular environment. Many species were isolated from environmental samples, displaying unique morphologies and growth patterns. To optimize the soft agar assay in a six-well cell culture plate for …

The Influence Of Flooding On Macroinvertebrate Diversity Of The James River Rock Pools, Meghan Leber

Honors Theses

Biodiversity within an ecosystem can be greatly influenced by environmental disturbances, such as fires, flooding, or other extreme events. Studying the effects of these disturbances on species diversity can be complicated though, due to difficulties tracking species-level responses and isolating the effects of disturbances. Model systems in community ecology, such as rock pools, are a beneficial way to scale down the study of disturbances in discrete communities without losing the ability to analyze important influences or interactions. In this study, macroinvertebrates within the James River rock pools were surveyed to investigate seasonal and annual differences in species richness and diversity, …

Variability In Antibacterial Activity In The Caribbean Sponge Amphimedon Compressa, Mackenzie Reilly

Honors Theses

Coral reefs are essential ecosystems that provide an abundance of natural resources. Sponges, common reef inhabitants, produce a diversity of secondary metabolites that are known to serve as chemical defenses. Secondary metabolites often have ecological functions, such as antipredator and antibacterial activities. I studied the common Caribbean sponge species, Amphimedon compressa, which is known to be chemically defended. Samples were collected from three sites in Belize, two sites in Grand Cayman, and three sites in St. Croix, U.S. Virgin Islands. To determine whether antibacterial activity varied across broad or local geographic scales, sponge extracts were tested against four bacterial strains …

Effects Of Temperature On Enzyme Activity Of Aquatic Litter-Associated Fungi, Nicholas Bautz

Honors Theses

The decomposition of leaf litter in aquatic ecosystems is carried out mostly by microorganisms, including bacteria and fungi. Fungi, known as aquatic hyphomycetes, dominate microbial communities in the decomposition of leaf litter. These fungi produce extracellular enzymes that aid in the sequestration of carbon and nutrients and lead to the breakdown of complex plant polymers. We evaluated the effects of temperature on extracellular enzyme activity within the framework of the Metabolic Theory of Ecology (MTE). The activity of β-1,4-glucosidase and β-1,4-xylosidase was estimated fluorometrically using artificial substrate analogs. Phenol oxidase activity was estimated spectrophotometrically from oxidation of L-DOPA (L-3,4-dihydroxyphenylalanine). We …