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Biology Faculty Publications and Presentations

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Articles 31 - 60 of 662

Full-Text Articles in Biology

Life History, Reproductive, And Demographic Parameters For Bottlenose Dolphins (Tursiops Truncatus) In Sarasota Bay, Florida, Randall S. Wells, Aleta A. Hohn, Michael D. Scott, Jay C. Sweeney, Forrest I. Townsend, Jason B. Allen, Aaron A. Barleycorn, Katherine A. Mchugh, Kim Bassos-Hull, Gretchen N. Lovewell, Deborah A. Duffield, Cynthia R. Smith, A. Blair Irvine Feb 2025

Life History, Reproductive, And Demographic Parameters For Bottlenose Dolphins (Tursiops Truncatus) In Sarasota Bay, Florida, Randall S. Wells, Aleta A. Hohn, Michael D. Scott, Jay C. Sweeney, Forrest I. Townsend, Jason B. Allen, Aaron A. Barleycorn, Katherine A. Mchugh, Kim Bassos-Hull, Gretchen N. Lovewell, Deborah A. Duffield, Cynthia R. Smith, A. Blair Irvine

Biology Faculty Publications and Presentations

Studies of the resident community of bottlenose dolphins (Tursiops truncatus) of Sarasota Bay, Florida, have been conducted for more than 50 years. Detailed histories have been collected for resident individuals through integrated observations, systematic photographic identification surveys, tagging and tracking, catch-and-release health assessments, remote biopsy sampling, and stranding response. This has produced a unique dataset documenting life history milestones and vital rates of a small cetacean. Analyses of data from 482 resident Sarasota Bay dolphins have revealed estimated maximum life spans of 67 years for females and 52 years for males. For females, predicted age at sexual maturation …


Elements Of Social Capital And Counterspace Processes Contribute To Undergraduate Stem Student Development Of A Sense Of Belonging, Mackenzie J. Gray, Jasmine N. Yacobian, Erin Shortlidge Jan 2025

Elements Of Social Capital And Counterspace Processes Contribute To Undergraduate Stem Student Development Of A Sense Of Belonging, Mackenzie J. Gray, Jasmine N. Yacobian, Erin Shortlidge

Biology Faculty Publications and Presentations

Having a sense of belonging can promote persistence in the STEM fields, but less is known about what it means to develop that sense of belonging. To investigate this phenomenon, we conducted semi‐structured interviews with a cohort of STEM students (n = 10) nearing graduation at an urban university regarding their sense of belonging and qualitatively coded the interviews using thematic analysis. Results revealed that all interviewed students clearly articulated feelings of belonging, making them an ideal population from which to learn more. We applied two frameworks to guide our understanding of what factors promoted the development of a sense …


The Complex Development Of Psoralen-Interstrand Crosslink Resistance In Escherichia Coli Requires Acrr Inactivation, Retention Of A MarboxSequence, And One 3 Of Three Mara, Soxs, Or Rob Global Regulators, Travis K. Worley, Ayah H. Asal, Lo Cooper, Charmain T. Courcelle, Justin C. Courcelle Jan 2025

The Complex Development Of Psoralen-Interstrand Crosslink Resistance In Escherichia Coli Requires Acrr Inactivation, Retention Of A MarboxSequence, And One 3 Of Three Mara, Soxs, Or Rob Global Regulators, Travis K. Worley, Ayah H. Asal, Lo Cooper, Charmain T. Courcelle, Justin C. Courcelle

Biology Faculty Publications and Presentations

Crosslinking agents, such as psoralen and UVA radiation, can be effectively used as antimicrobials and for treating several dysplastic conditions in humans, including some cancers. Yet, both cancer cells and bacteria can become resistant to these compounds, making it important to understand how resistance develops. Recently, several mutants were isolated that developed high-levels of resistance to these compounds through upregulation of components of the AcrAB-TolC-efflux pump. Here, we characterized these mutants and found that resistance specifically requires inactivating mutations of the acrR transcriptional repressor which also retain the marbox sequence found within this coding region. In addition, the …


Heterospecific Coprophagy In The White-Tailed Deer Odocoileus Virginianus (Zimmermann, 1780) In Costa Rica, Mora Manuel Jose, Juan De Dios Astorga-Acuña Jan 2025

Heterospecific Coprophagy In The White-Tailed Deer Odocoileus Virginianus (Zimmermann, 1780) In Costa Rica, Mora Manuel Jose, Juan De Dios Astorga-Acuña

Biology Faculty Publications and Presentations

Animals may engage in coprophagy, including heterospecific coprophagy, where they consume the feces of other species. The white-tailed deer, Odocoileus virginianus, primarily feeds on plant material, such as tender forbs and shrub shoots. This report documents a case of heterospecific coprophagy by the white-tailed deer in Costa Rica, where two individuals were observed consuming domestic horse feces. The reasons for heterospecific coprophagy in ruminants like the white-tailed deer are unclear. Nutritional supplementation, microbial transfer, or other ecological factors may play a role in this behavior. However, such a behavior also poses risks, including the transmission of diseases and parasites from …


Best Practices For The Naming Of Species, Luis A. Ruedas, Ryan W. Norris, Robert M. Timm Nov 2024

Best Practices For The Naming Of Species, Luis A. Ruedas, Ryan W. Norris, Robert M. Timm

Biology Faculty Publications and Presentations

The process of describing a species has evolved considerably since the modern age of taxonomy was initiated with the publication of the 10th edition of Linnaeus’ Systema Naturæ in 1758. Nevertheless, the basic unit of the taxonomic framework remains the species group (species and subspecies). As a result, it is incumbent upon individuals undertaking species-group descriptions to strive for the highest standards, just as it is for reviewers and editors to hold authors to those same standards. The clear and mounting biodiversity crisis, the increasing proliferation of journals, the multiplication of journals publishing only in electronic format, the decline in …


Systematics Of The Rhinolophus Landeri Complex, With Evidence For 3 Additional Afrotropical Bat Species, Bruce D. Patterson, Terrence C. Demos, Laura Torrent, Amanda L. Grunwald, Cecilia Montauban, Julian C. Kerbis Peterhans, Molly M. Mcdonough, Carl W. Dick, Michael Bartonjo, M. Corrie Schoeman, Multiple Additional Authors Sep 2024

Systematics Of The Rhinolophus Landeri Complex, With Evidence For 3 Additional Afrotropical Bat Species, Bruce D. Patterson, Terrence C. Demos, Laura Torrent, Amanda L. Grunwald, Cecilia Montauban, Julian C. Kerbis Peterhans, Molly M. Mcdonough, Carl W. Dick, Michael Bartonjo, M. Corrie Schoeman, Multiple Additional Authors

Biology Faculty Publications and Presentations

Roughly a third of all horseshoe bat species (Rhinolophidae: Rhinolophus) are found in Africa, where a recent continent-wide genetic survey suggested the presence of both undescribed and apparently invalid species. Here, we focus on the R. landeri species complex and the recent elevation of R. lobatus Peters, 1852, to species rank. That action created ambiguity in the taxonomy of East African members of the group—are both R. landeri Martin, 1838, and R. lobatus sympatric in East Africa or is another, unnamed species present there? Here, we refine genetic, morphological, and behavioral characterizations of R. landeri and its erstwhile synonyms with …


Application Of Criminology In Urban Ecology And Evolution: Routine Activity Theory And Field Equipment Disappearance Dynamics, Ignacy Stadnicki, Michela Corsini, Marta Szulkin Aug 2024

Application Of Criminology In Urban Ecology And Evolution: Routine Activity Theory And Field Equipment Disappearance Dynamics, Ignacy Stadnicki, Michela Corsini, Marta Szulkin

Biology Faculty Publications and Presentations

Research in urban ecology and evolution relies on the use of deployable scientific equipment. If left unattended in the field, scientific equipment may be prone to vandalism and theft, especially in the urban space. Here, we empirically applied a theory derived from the field of criminology, specifically the Routine Activity Theory (RAT) framework, to predict disappearance rates of scientific equipment in an ongoing urban ecology research project. First, we tested a routinely applied method of equipment protection – labelling – and investigated whether equipment disappearance varied with label information content and message tone. Second, we examined whether equipment attributes (price, …


Tissue-Specific Effects Of Temperature And Salinity On The Cell Cycle And Apoptosis In The Nile Tilapia (Oreochromis Niloticus)., Rachel M. Palmer, Arika Sandbach, Bradley A. Buckley Jul 2024

Tissue-Specific Effects Of Temperature And Salinity On The Cell Cycle And Apoptosis In The Nile Tilapia (Oreochromis Niloticus)., Rachel M. Palmer, Arika Sandbach, Bradley A. Buckley

Biology Faculty Publications and Presentations

The Nile Tilapia (Oreochromis niloticus) evolved in warm, freshwater rivers, but possesses a broad physiological tolerance to a range of environmental conditions. Due to this hardiness and resilience, this species has been successfully introduced to regions widely outside of its native range. Here, we examine the impact of temperature and salinity variation on this species at the sub-lethal level. Specifically, Nile Tilapia were exposed to two temperatures (21 °C or 14 °C) and three salinities (0, 16, 34 ppt) for 1-h. Given their native habitat, the 21 °C / 0 ppt exposure was considered the control condition. Both cell cycle …


Short-Term Time-Series Observations Of Phytoplankton Light-Absorption And Productivity In Prydz Bay, Coastal Antarctica, Sarat C. Tripathy, Anvita U. Kerkar, P. Sabu, Sunil K. Padhi, Sudarsana R. Pandi, Amit Sarkar, Bhaskar V. Parli, Rahul Mohan Jul 2024

Short-Term Time-Series Observations Of Phytoplankton Light-Absorption And Productivity In Prydz Bay, Coastal Antarctica, Sarat C. Tripathy, Anvita U. Kerkar, P. Sabu, Sunil K. Padhi, Sudarsana R. Pandi, Amit Sarkar, Bhaskar V. Parli, Rahul Mohan

Biology Faculty Publications and Presentations

The optical characteristics of coastal Antarctic waters exhibit complexity due to the dynamic hydrography influenced by meltwater intrusion, which alters nutrient levels, thermohaline structure, and optically active substances (OAS) regimes. Studies on bio-optical variability and its implications on phytoplankton productivity (PP) are scanty in coastal polar regions. On this backdrop, time-series measurements (72 h at 6 h intervals) of bio-optical properties such as phytoplankton biomass (chlorophyll-a), absorption (aph), and total suspended matter (TSM) concurrently with PP were measured to understand their interplay and variability in relation to the ambient physicochemical settings in the under-sampled Prydz Bay, coastal Antarctica. Our findings …


Structural Heterogeneity Predicts Ecological Resistance And Resilience To Wildfire In Arid Shrublands, Andrii Zaiats, Megan E. Cattau, David S. Pilliod, Rongsong Liu, Patricia Kaye T. Dumandan, Ahmad Hojatimalekshah, Donna M. Delparte, T. Trevor Caughlin Jun 2024

Structural Heterogeneity Predicts Ecological Resistance And Resilience To Wildfire In Arid Shrublands, Andrii Zaiats, Megan E. Cattau, David S. Pilliod, Rongsong Liu, Patricia Kaye T. Dumandan, Ahmad Hojatimalekshah, Donna M. Delparte, T. Trevor Caughlin

Biology Faculty Publications and Presentations

Context Dynamic feedbacks between physical structure and ecological function drive ecosystem productivity, resilience, and biodiversity maintenance. Detailed maps of canopy structure enable comprehensive evaluations of structure–function relationships. However, these relationships are scale-dependent, and identifying relevant spatial scales to link structure to function remains challenging.

Objectives We identified optimal scales to relate structure heterogeneity to ecological resistance, measured as the impacts of wildfire on canopy structure, and ecological resilience, measured as native shrub recruitment. We further investigated whether structural heterogeneity can aid spatial predictions of shrub recruitment.

Methods Using high-resolution imagery from unoccupied aerial systems (UAS), we mapped structural heterogeneity across …


Root Nodules Of Red Alder (Alnus Rubra) And Sitka Alder (Alnus Viridis Ssp. Sinuata) Are Inhabited By Taxonomically Diverse Cultivable Microbial Endophytes, Robyn Dove, Emily R. Wolfe, Nathan U. Stewart, Abigail Coleman, Sara Herrejon Chavez, Daniel J. Ballhorn Jun 2024

Root Nodules Of Red Alder (Alnus Rubra) And Sitka Alder (Alnus Viridis Ssp. Sinuata) Are Inhabited By Taxonomically Diverse Cultivable Microbial Endophytes, Robyn Dove, Emily R. Wolfe, Nathan U. Stewart, Abigail Coleman, Sara Herrejon Chavez, Daniel J. Ballhorn

Biology Faculty Publications and Presentations

The root nodules of actinorhizal plants are home to nitrogen-fixing bacterial symbionts, known as Frankia, along with a small percentage of other microorganisms. These include fungal endophytes and non-Frankia bacteria. The taxonomic and functional diversity of the microbial consortia within these root nodules is not well understood. In this study, we surveyed and analyzed the cultivable, non-Frankia fungal and bacterial endophytes of root nodules from red and Sitka alder trees that grow together. We examined their taxonomic diversity, co-occurrence, differences between hosts, and potential functional roles. For the first time, we are reporting numerous fungal endophytes of alder root nodules. …


Oil Identification Of Harp Seal And Other Select Marine Mammals, Meghan Pinedo, Deborah A. Duffield, Dalin N. D’Alessandro, Erin R. Price, Edgard O. Espinoza Jun 2024

Oil Identification Of Harp Seal And Other Select Marine Mammals, Meghan Pinedo, Deborah A. Duffield, Dalin N. D’Alessandro, Erin R. Price, Edgard O. Espinoza

Biology Faculty Publications and Presentations

Because of the rich omega-3 fatty acids content, harp seal (Pagophilus groenlandicus) oil is a popular supplement that is packaged as pills in Canada and sold for medicinal purposes, although this practice is banned in the United States. Due to US regulations, it is important to be able to distinguish between fish oil and seal oil, but the taxonomic determination of oils provenance has been a difficult problem to solve. In this study, Direct Analysis in Real Time time-of-flight mass spectrometry (DART TOFMS) was used to analyze the chemotypes of blubber samples collected from seven species of …


The Value Of Support: Stem Intervention Programs Impact Student Persistence And Belonging., Erin E. Shortlidge, Mackenzie J. Gray, Suzanne Estes, Emma C. Goodwin Jun 2024

The Value Of Support: Stem Intervention Programs Impact Student Persistence And Belonging., Erin E. Shortlidge, Mackenzie J. Gray, Suzanne Estes, Emma C. Goodwin

Biology Faculty Publications and Presentations

In response to unwaveringly high attrition from STEM pathways, STEM Intervention Programs (SIPs) support STEM students in effort to increase retention. Using mixed methods (survey and focus groups), we studied students at one university who were either supported or unsupported by SIPs to understand how students may differ in experiences believed to contribute to STEM persistence. We evaluated: sense of belonging, scientific self-efficacy, scientific community values, scientific identity, and STEM involvement. The enrollment status of students two and a half years postsurvey was also tracked. SIP students reported significantly higher science identity and sense of belonging and were more involved …


Autism Risk Gene Cul3 Alters Neuronal Morphology Via Caspase-3 Activity In Mouse Hippocampal Neurons, Qiang-Qiang Xia, Anju Singh, Jing Wang, Zhong Xin Xuan, Jeffrey D. Singer, Craig M. Powell May 2024

Autism Risk Gene Cul3 Alters Neuronal Morphology Via Caspase-3 Activity In Mouse Hippocampal Neurons, Qiang-Qiang Xia, Anju Singh, Jing Wang, Zhong Xin Xuan, Jeffrey D. Singer, Craig M. Powell

Biology Faculty Publications and Presentations

Autism Spectrum Disorders (ASDs) are neurodevelopmental disorders (NDDs) in which children display differences in social interaction/communication and repetitive stereotyped behaviors along with variable associated features. Cul3, a gene linked to ASD, encodes CUL3 (CULLIN-3), a protein that serves as a key component of a ubiquitin ligase complex with unclear function in neurons. Cul3 homozygous deletion in mice is embryonic lethal; thus, we examine the role of Cul3 deletion in early synapse development and neuronal morphology in hippocampal primary neuronal cultures. Homozygous deletion of Cul3 significantly decreased dendritic complexity and dendritic length, as well as axon formation. Synaptic spine density significantly …


Demography With Drones: Detecting Growth And Survival Of Shrubs With Unoccupied Aerial Systems, Peter J. Olsoy, Andrii Zaiats, Donna M. Delparte, Matthew J. Germino, Bryce A. Richardson, Anna V. Roser, Jennifer S. Forbey, Megan E. Cattau, T. Trevor Caughlin May 2024

Demography With Drones: Detecting Growth And Survival Of Shrubs With Unoccupied Aerial Systems, Peter J. Olsoy, Andrii Zaiats, Donna M. Delparte, Matthew J. Germino, Bryce A. Richardson, Anna V. Roser, Jennifer S. Forbey, Megan E. Cattau, T. Trevor Caughlin

Biology Faculty Publications and Presentations

Large-scale disturbances, such as megafires, motivate restoration at equally large extents. Measuring the survival and growth of individual plants plays a key role in current efforts to monitor restoration success. However, the scale of modern restoration (e.g., >10,000 ha) challenges measurements of demographic rates with field data. In this study, we demonstrate how unoccupied aerial system (UAS) flights can provide an efficient solution to the tradeoff of precision and spatial extent in detecting demographic rates from the air. We flew two, sequential UAS flights at two sagebrush (Artemisia tridentata) common gardens to measure the survival and growth of …


Season Of Grazing Interacts With Soil Texture, Selecting For Associations Of Biocrust Morphogroups, Lea A. Condon, Roger Rosentreter, Kari E. Veblen, Peter S. Coates May 2024

Season Of Grazing Interacts With Soil Texture, Selecting For Associations Of Biocrust Morphogroups, Lea A. Condon, Roger Rosentreter, Kari E. Veblen, Peter S. Coates

Biology Faculty Publications and Presentations

Livestock grazing, a widespread land use in semi-arid systems, is often placed in opposition to the perpetuation of biological soil crusts (“biocrusts”: lichens, mosses, and algal crusts including cyanobacteria) that live on the soil surface and provide ecosystem functions. The composition of biocrusts and vascular plants varies with climate, soils, and disturbance. In general, ruderal mosses and light algal crusts make up greater proportions of biocrusts in the presence of disturbance, although morphogroups of biocrusts respond differently to various disturbances. It is unknown if there are scenarios under which grazing can occur and ruderal components of biocrust could be maintained. …


Effective Dispersal Patterns In Prairie Plant Species Across Human-Modified Landscapes., Elizabeth C. Hendrickson, Mitchell B. Cruzan Apr 2024

Effective Dispersal Patterns In Prairie Plant Species Across Human-Modified Landscapes., Elizabeth C. Hendrickson, Mitchell B. Cruzan

Biology Faculty Publications and Presentations

Effective dispersal among plant populations is dependent on vector behaviour, landscape features and availability of adequate habitats. To capture landscape feature effects on dispersal, studies must be conducted at scales reflecting single-generation dispersal events (mesoscale). Many studies are conducted at large scales where genetic differentiation is due to dispersal occurring over multiple generations, making it difficult to interpret the effects of specific landscape features on vector behaviour. Genetic structure at the mesoscale may be determined by ecological and evolutionary processes, such as the consequences of vector behaviour on patterns of gene flow. We used chloroplast haplotypes and nuclear genome SNP …


Effects Of Wind Turbine Noise On Songbird Behavior During Nonbreeding Season, Yael Lehnardt, Jesse R. Barber, Oded Berger-Tal Apr 2024

Effects Of Wind Turbine Noise On Songbird Behavior During Nonbreeding Season, Yael Lehnardt, Jesse R. Barber, Oded Berger-Tal

Biology Faculty Publications and Presentations

Anthropogenic noise is one of the fastest growing, globally widespread pollutants, affecting countless species worldwide. Despite accumulating evidence of the negative impacts of wind turbines on wildlife, little is known about how the noise they generate affects ecological systems. Songbirds may be susceptible to noise pollution due to their reliance on vocal communication and thus, in this field study, we examined how songbirds are affected by wind turbine noise. We broadcasted noise produced by one wind turbine in a migratory stopover site during the nonbreeding season. Throughout the study, we repeatedly monitored the acoustic environment and songbird community before, during, …


Rhizobia-Legume Symbiosis Mediates Direct And Indirect Interactions Between Plants, Herbivores And Their Parasitoids, Carlos Bustos-Segura, Adrienne L. Godschalx, Lucas Malacari, Sergio Rasmann, Fanny Deiss, Daniel Ballhorn, Betty Benrey Mar 2024

Rhizobia-Legume Symbiosis Mediates Direct And Indirect Interactions Between Plants, Herbivores And Their Parasitoids, Carlos Bustos-Segura, Adrienne L. Godschalx, Lucas Malacari, Sergio Rasmann, Fanny Deiss, Daniel Ballhorn, Betty Benrey

Biology Faculty Publications and Presentations

Microorganisms associated with plant roots significantly impact the quality and quantity of plant defences. However, the bottom-up effects of soil microbes on the aboveground multitrophic interactions remain largely under studied. To address this gap, we investigated the chemically- mediated effects of nitrogen-fixing rhizobia on legume-herbivore-parasitoid multitrophic interactions. To address this, we initially examined the cascading effects of the rhizobia bean association on herbivore caterpillars, their parasitoids, and subsequently investigated how rhizobia influence on plant volatiles and extrafloral nectar. Our goal was to understand how these plant- mediated effects can affect parasitoids. Lima bean plants (Phaseoulus lunatus) inoculated with rhizobia exhibited …


Proteomic Dataset For Decellularization Of Porcine Auricular Cartilage, Roxanne N. Stone, Xinzhu Pu, Julia Thom Oxford Feb 2024

Proteomic Dataset For Decellularization Of Porcine Auricular Cartilage, Roxanne N. Stone, Xinzhu Pu, Julia Thom Oxford

Biology Faculty Publications and Presentations

Objectives Osteoarthritis (OA) is a major concern in the United States and worldwide. Development and validation of robust decellularization techniques is critical in generating suitable bioscaffolds for future OA treatment options.

Data descriptions In the present study, proteins from porcine auricular cartilage before and after decellularization were extracted, digested, and identified using liquid chromatography-tandem mass spectrometry (LC-MS/MS). The data represents protein profiles of both non-decellularized and decellularized porcine auricular cartilage. This data is intended to be useful to scientists who are interesting in generating biomaterials for potential relevant clinical applications using decellularized cartilage tissue.


A Test Of The Gleaner–Opportunist Trade-Off Among Photosynthetic Traits In Cryptophyte Algae, Jake A. Swanson, Matthew J. Greenwold, Tammi L. Richardson, Jeffry L. Dudycha Feb 2024

A Test Of The Gleaner–Opportunist Trade-Off Among Photosynthetic Traits In Cryptophyte Algae, Jake A. Swanson, Matthew J. Greenwold, Tammi L. Richardson, Jeffry L. Dudycha

Biology Faculty Publications and Presentations

As photosynthetic producers, phytoplankton form the foundation of aquaticfood webs. Understanding the relationships among photosynthetic traits inphytoplankton is essential to revealing how diversification of these traitsallows phytoplankton to harvest energy from different light environments. Weinvestigated whether the diversification of 15 species of cryptophytes, a phy-lum of phytoplankton with diverse light-capturing pigments, showed evidenceof trade-offs among photosynthetic performance traits as predicted by the gleaner-opportunist resource exploitation framework. We constructed photo-synthesis versus irradiance (P–E) curves and rapid light curves (RLCs) to estimate parameters characterizing photosynthetic performance and electrontransport rate. We inferred the evolutionary relationships among the 15 specieswith ultraconserved genomic elements and …


Symbiosis, Dysbiosis And The Impact Of Horizontal Exchange On Bacterial Microbiomes In Higher Fungus-Gardening Ants, Blake Bringhurst, Matthew J. Greenwold, Katrin Kellner, Jon N. Seal Feb 2024

Symbiosis, Dysbiosis And The Impact Of Horizontal Exchange On Bacterial Microbiomes In Higher Fungus-Gardening Ants, Blake Bringhurst, Matthew J. Greenwold, Katrin Kellner, Jon N. Seal

Biology Faculty Publications and Presentations

Advances in our understanding of symbiotic stability have demonstrated that microorganisms are key to understanding the homeostasis of obligate symbioses. Fungus-gardening ants are excellent model systems for exploring how microorganisms may be involved in symbiotic homeostasis as the host and symbionts are macroscopic and can be easily experimentally manipulated. Their coevolutionary history has been well-studied; examinations of which have depicted broad clade-to-clade specificity between the ants and fungus. Few studies hitherto have addressed the roles of microbiomes in stabilizing these associations. Here, we quantified changes in microbiome structure as a result of experimentally induced horizontal exchange of symbionts. This was …


The Role Of Nad+ And Nad+-Boosting Therapies In Inflammatory Response By Il-13, Anton D. Pugel, Alyssa M. Schoenfeld, Sara Z. Alsaifi, Jocelyn R. Holmes, Brad E. Morrison Feb 2024

The Role Of Nad+ And Nad+-Boosting Therapies In Inflammatory Response By Il-13, Anton D. Pugel, Alyssa M. Schoenfeld, Sara Z. Alsaifi, Jocelyn R. Holmes, Brad E. Morrison

Biology Faculty Publications and Presentations

The essential role of nicotinamide adenine dinucleotide+ (NAD+) in redox reactions during oxidative respiration is well known, yet the coenzyme and regulator functions of NAD+ in diverse and important processes are still being discovered. Maintaining NAD+ levels through diet is essential for health. In fact, the United States requires supplementation of the NAD+ precursor niacin into the food chain for these reasons. A large body of research also indicates that elevating NAD+ levels is beneficial for numerous conditions, including cancer, cardiovascular health, inflammatory response, and longevity. Consequently, strategies have been created to elevate …


Overlapping Extractive Land Use Rights Increases Deforestation And Forest Degradation In Managed Natural Production Forests, Bingcai Liu, Anand Roopsind, Brent Sohngen Feb 2024

Overlapping Extractive Land Use Rights Increases Deforestation And Forest Degradation In Managed Natural Production Forests, Bingcai Liu, Anand Roopsind, Brent Sohngen

Biology Faculty Publications and Presentations

Guyana manages an estimated 5.3 million hectares of old-growth tropical forests, 29% of its total forest area, for timber extraction. Individuals and companies can apply for time-limited leases that allocate access, management, and extraction rights for timber through a concession system. In many tropical regions, including Guyana, a lack of integrated land use planning often leads to overlapping extractive and forest use rights for logging and mining. Overlapping land rights in turn create uncertainty and limit investments toward sustainable forest management, affecting deforestation and forest degradation rates. In this study, we use matched fixed-effect and difference-in-differences panel data models to …


Ubiquitous Filter Feeders Shape Open Ocean Microbial Community Structure And Function, Anne W. Thompson, Györgyi Nyerges, Kylee M. Brevick, Kelly Sutherland Feb 2024

Ubiquitous Filter Feeders Shape Open Ocean Microbial Community Structure And Function, Anne W. Thompson, Györgyi Nyerges, Kylee M. Brevick, Kelly Sutherland

Biology Faculty Publications and Presentations

The mechanism of mortality plays a large role in how microorganisms in the open ocean contribute to global energy and nutrient cycling. Salps are ubiquitous pelagic tunicates that are a well-known mortality source for large phototrophic microorganisms in coastal and high-latitude systems, but their impact on the immense populations of smaller prokaryotes in the tropical and subtropical open ocean gyres is not well quantified. We used robustly quantitative techniques to measure salp clearance and enrichment of specific microbial functional groups in the North Pacific Subtropical Gyre, one of the largest ecosystems on Earth. We discovered that salps are a previously …


9s1r Nullomer Peptide Induces Mitochondrial Pathology, Metabolic Suppression, And Enhanced Immune Cell Infiltration, In Triple-Negative Breast Cancer Mouse Model, Nilufar Ali, Cody Wolf, Swarna Kanchan, Shivakumar R. Veerabhadraiah, Laura Bond, Matthew W. Turner, Cheryl L. Jorcyk, Greg Hampikian Jan 2024

9s1r Nullomer Peptide Induces Mitochondrial Pathology, Metabolic Suppression, And Enhanced Immune Cell Infiltration, In Triple-Negative Breast Cancer Mouse Model, Nilufar Ali, Cody Wolf, Swarna Kanchan, Shivakumar R. Veerabhadraiah, Laura Bond, Matthew W. Turner, Cheryl L. Jorcyk, Greg Hampikian

Biology Faculty Publications and Presentations

Nullomers are the shortest strings of absent amino acid (aa) sequences in a species or group of species. Primes are those nullomers that have not been detected in the genome of any species. 9S1R is a 5-aa peptide prime sequence attached to 5-arginine aa, used to treat triple negative breast cancer (TNBC) in an in vivo mouse model. This unique peptide, administered with a trehalose carrier (9S1R-NulloPT), offers enhanced solubility and exhibits distinct anti-cancer effects against TNBC. In our study, we investigated the effect of 9S1R-NulloPT on tumor growth, metabolism, metastatic burden, tumor immune-microenvironment (TME), and transcriptome of aggressive mouse …


Applied Soft Classes And Fuzzy Confusion In A Patchwork Semi-Arid Ecosystem: Stitching Together Classification Techniques To Preserve Ecologically-Meaningful Information, Josh Enterkine, T. Trevor Caughlin, Hamid Dashti, Nancy F. Glenn Jan 2024

Applied Soft Classes And Fuzzy Confusion In A Patchwork Semi-Arid Ecosystem: Stitching Together Classification Techniques To Preserve Ecologically-Meaningful Information, Josh Enterkine, T. Trevor Caughlin, Hamid Dashti, Nancy F. Glenn

Biology Faculty Publications and Presentations

Dryland ecosystems have complex vegetation communities, including subtle transitions between communities and heterogeneous coverage of key functional groups. This complexity challenges the capacity of remote sensing to represent land cover in a meaningful way. Many remote sensing methods to map vegetation in drylands simplify fractional cover into a small number of functional groups that may overlook key ecological communities. Here, we investigate a remote sensing process that further advances our understanding of the link between remote sensing and ecologic community types in drylands. We propose a method using k-means clustering to establish soft classes of vegetation cover communities from detailed …


Genomic Surveillance Of Sars-Cov-2 Sequence Variants At Universities In Southwest Idaho, Jennifer R. Chase, Laura Bond, Daniel J. Vail, Milan Sengthep, Adriana Rodriguez, Joe Christianson, Stephanie F. Hudon, Julia Thom Oxford Jan 2024

Genomic Surveillance Of Sars-Cov-2 Sequence Variants At Universities In Southwest Idaho, Jennifer R. Chase, Laura Bond, Daniel J. Vail, Milan Sengthep, Adriana Rodriguez, Joe Christianson, Stephanie F. Hudon, Julia Thom Oxford

Biology Faculty Publications and Presentations

Although the impact of the SARS-CoV-2 pandemic on major metropolitan areas is broadly reported and readily available, regions with lower populations and more remote areas in the United States are understudied. The objective of this study is to determine the progression of SARS-CoV-2 sequence variants in a frontier and remote intermountain west state among university-associated communities. This study was conducted at two intermountain west universities from 2020 to 2022. Positive SARS-CoV-2 samples were confirmed by quantitative real-time reverse transcription-polymerase chain reaction and variants were identified by the next-generation sequencing of viral genomes. Positive results were obtained for 5355 samples, representing …


Leveraging High Resolution Classifications And Random Forests For Hindcasting Decades Of Mesic Ecosystem Dynamics In The Landsat Time Series, N. E. Kolarik, N. Shrestha, T. Caughlin, J. S. Brandt Jan 2024

Leveraging High Resolution Classifications And Random Forests For Hindcasting Decades Of Mesic Ecosystem Dynamics In The Landsat Time Series, N. E. Kolarik, N. Shrestha, T. Caughlin, J. S. Brandt

Biology Faculty Publications and Presentations

Mesic ecosystems are fundamental to conservation efforts in semi-arid systems, but are threatened by climate change and development. Newer earth observation datasets, including Sentinel-1 and −2, provide opportunities to monitor mesic ecosystems at meaningful spatial scales, but are insufficient for measuring decadal-scale changes. Conversely, the Landsat time series has decades of data, but images are spatially coarse relative to many of the mesic ecosystem areas that sustain dryland systems, resulting in classifications with mixed pixels inadequate for effective monitoring. We developed a workflow that uses 10-m classifications produced from fusion of the Sentinel-1 and −2 time series (2017–2020) to estimate …


Low Spatial Habitat Overlap Of Herbivores In The High Arctic Tundra, Virve Ravolainen, Ingrid M. G. Paulsen, Isabell Eischeid, Jennifer Sorensen Forbey, Eva Fuglei, Tomáš Hájek, Brage B. Hansen, Leif Egil Loe, Petr Macek, Jesper Madsen, Eeva M. Soininen, James D. M. Speed, Audun Stien, Hans Tømmervik, Åshild Ønvik Pedersen Jan 2024

Low Spatial Habitat Overlap Of Herbivores In The High Arctic Tundra, Virve Ravolainen, Ingrid M. G. Paulsen, Isabell Eischeid, Jennifer Sorensen Forbey, Eva Fuglei, Tomáš Hájek, Brage B. Hansen, Leif Egil Loe, Petr Macek, Jesper Madsen, Eeva M. Soininen, James D. M. Speed, Audun Stien, Hans Tømmervik, Åshild Ønvik Pedersen

Biology Faculty Publications and Presentations

Herbivores play a crucial role in shaping tundra ecosystems through their effects on vegetation, nutrient cycling, and soil abiotic factors. Understanding their habitat use, co-occurrence, and overlap is therefore essential for informing ecosystem-based management and conservation. In the High Arctic, only a marginal proportion of the land area is vegetated, and climate change is impacting herbivore population sizes and their habitats. In this study, we assessed the spatial habitat overlap of a vertebrate herbivore community based on: 1) regional predictive summer habitat suitability models for the resident Svalbard reindeer (Rangifer tarandus platyrhynchus), resident Svalbard rock ptarmigan (Lagopus …