Biology Commons^™

Seed Preference Trials Of Namaqua Rock Mice And Rodent Density In The Lowveld Savanna Of South Africa, Whitney L. Walker

Mahurin Honors College Capstone Experience/Thesis Projects

Large trees important in the South African savanna are in decline. Initially, climate change and elephants were thought to be the cause. However, all reasons for the decline are unknown. I investigated how Namaqua rock mice potentially affect recruitment of tree seedlings through seed predation in South Africa. I used live traps to capture rodents during the dry season of June-August on Balule Nature Reserve (BNR). I exposed the mice to seed preference trials in enclosures to determine if they would eat seeds of three target tree species; marula (Sclerocarya birrea), knobthorn acacia (Acacia nigrescens), and …

Dietary Overlap Of Native White Bass And Introduced Yellow Bass In Barren River, Micaela L. Montgomery

Mahurin Honors College Capstone Experience/Thesis Projects

In the Barren River Lake of south central Kentucky, native white bass, Morone chrysops, has experienced a decline in population after the introduction of yellow bass, Morone mississippiensis. These species are competing for resources due to an overlapping diet, likely contributing to the decline of the white bass. To explore this hypothesis, I examined the stomach contents and otoliths of white and yellow bass caught during their spawning time in spring 2012. There were 40 yellow bass and 128 white bass collected in Barren River upstream of Barren River Lake. Analysis of stomach contents revealed that both white and …

Trypanosoma Cruzi Prevalence In The Domestic Canine Population In Central And Eastern Kentucky, Katelyn Cox

Mahurin Honors College Capstone Experience/Thesis Projects

Domestic canines are regarded as natural sentinelsfor the transmission of vector-borne pathogens since infection in an owner’s dog suggests the presence of the vector in or around the household. In collaboration with the University of Kentucky’s Veterinary Diagnostic Lab in Lexington, Kentucky, we have investigated the prevalence of Trypanosoma cruzi (the causative agent of Chagas disease) in canines from central and eastern Kentucky via a serological test, polymerase chain reaction (PCR), and DNA sequencing. In addition, Canine SNAP 4Dx plus tests (Idexx Laboratories, Inc.) were used to determine the prevalence of four other vector-borne pathogens: Ehrlichia canis/ewingii, Borrelia burgdorferi, Anaplasma …

Acute Sleep Fragmentation Induces Tissue-Specific Changes In Cytokine Gene Expression And Increases Serum Corticosterone Concentration, Jennifer Dumaine

Masters Theses & Specialist Projects

Sleep fragmentation induces acute inflammation and increases glucocorticosteroids in vertebrates. Obesity and sleep fragmentation are often concurrent pro-inflammatory conditions in patients with obstructive sleep apnea. Despite the association between the two, their simultaneous effects on immune and endocrine profiles have not been explored. In the first experiment, we investigated changes in proinflammatory (IL-1β, TNF-α) and anti-inflammatory (TGF-β1) cytokine gene expression in the periphery (liver, spleen, fat, and heart) and brain (hypothalamus, prefrontal cortex, and hippocampus) in mice exposed to various intervals of sleep fragmentation. Serum corticosterone concentration was also assessed. Sleep was disrupted in male C57BL/6J mice using an automated …

Habituation To Auditory Stimuli By Captive African Elephants (Loxodonta Africana), Sarah Elizabeth Goodyear

Masters Theses & Specialist Projects

Elephants are cognitive species that exhibit many types of learning. Associative, social, and insight learning have been investigated with elephants, but one of the simplest forms, habituation, has not. As an individual learns that a stimulus is neither harmful nor beneficial, it will decrease its response to the stimulus through the process of habituation. Elephants possess a well-developed sensory system and may habituate to stimuli that could be used for enrichment and/or management. The aim of this study was to examine the habituation process of elephants in response to repeated presentations of two auditory stimuli –buzzing by a disturbed beehive …

Epiphytic Diatom Community Structure In A Karst Riverine System, Gregory John Barren

Masters Theses & Specialist Projects

The goal of this study was to assess the epiphytic diatom community structure of two host species along a karst gradient in the upper Green River, Kentucky to a gain a better understanding of the role of diatoms in the food web. The host species studied were Podostemum ceratophyllum and Cladophora. Percent cover of P. ceratophyllum and Cladophora were quantified in the four study reaches. The host species were sampled near-shore and mid-channel in each reach in September and October of 2013. After diatoms were extracted from the host and enumerated the density and diversity were quantified. Twelve genera were …

Phylogeography Of Darlingtonea Kentuckensis And Molecular Systematics Of Kentucky Cave Trechines, Olivia Frances Boyd

Masters Theses & Specialist Projects

The monotypic cave carabid genus Darlingtonea is widely distributed along the eastern band of the Mississippian/Pennyroyal plateau in Kentucky and northern Tennessee. DNA sequence data from the mitochondrial gene cytochrome oxidase subunit I (COI) was collected from one to four individuals from 27 populations, and patterns of phylogeography and population structure were inferred from COI haplotypes. A hierarchical analysis of molecular variance found low nucleotide diversity within populations and statistically significant variation among geographically-defined groups tested based on two a priori hypotheses of structure. Population structure among five distinct genetic clusters identifies approximate locations of barriers to gene flow among …

Hearing Sensitivity And The Effect Of Sound Exposure On The Axolotl (Ambystoma Mexicanum), Amy K. Fehrenbach

Masters Theses & Specialist Projects

The axolotl (Ambystoma mexicanum) has been used as a model organism for studying development, genetics, and regeneration. Although the sensory hair cells of the lateral line of this species have been shown to be able to regenerate, it is not known whether this also occurs in the inner ear. In fact, little is known about the hearing capabilities of the axolotl or other salamander species. I recorded auditory evoked potentials (AEPs) of six axolotls at eleven frequencies (0.1, 0.25, 0.4, 0.6, 0.8, 1, 1.5, 2, 3, 4, and 6 kHz) in order to produce baseline audiograms of underwater pressure sensitivity. …

Heterologous Expression Of Arabidopsis Thaliana Purple Acid Phosphatase Gene (Atpap15) In Crops For Phytoremediation Of Sites Contaminated With Excess Phosphorus, Jane Jeruto Bartonjo

Masters Theses & Specialist Projects

AtPAP15 is one of the purple acid phosphatases expressed by Arabidopsis thaliana that has been extensively studied. Purified AtPAP15 has been shown to exhibit both phytase and phosphomonoesterase activities in acidic pH with maximal activity at pH 4.5. AtPAP15 is a phosphorus starvation inducible (PSI) gene that is expressed highly during phosphorus deficient conditions. In the current study, AtPAP15 was overexpressed in Nicotiana tabaccum under cauliflower mosaic virus (CaMV35S) constitutive promoter. After PCR confirmation of the gene, plants were transferred to the greenhouse and allowed to grow in pots. The pots contained Sta-Green potting mix (Lowe’s Inc., Mooresville, North Carolina,U.S.). …

Non-Adaptive Phentypic Plasticity: Morphology, But Not Swim Speed, Of Spotted Salamander Larvae Is Affected By "Terrestrial" And "Aquatic" Herbicides, Mitchell Schooler

Mahurin Honors College Capstone Experience/Thesis Projects

1. Phenotypic plasticity, although ubiquitous, may not always be advantageous. In cases where individuals expressing an induced phenotype outperform non-induced individuals, the phenotypic plasticity is considered adaptive. Conversely, if the individuals with an induced phenotype underperform relative to non-induced individuals, then the plasticity is maladaptive. A final possibility is that both induced and non-induced individuals perform equally well (or poorly). This would be a case of non-adaptive (i.e. neutral) phenotypic plasticity.
2. We investigated the mode of phenotypic plasticity induced by four glyphosate-based herbicides in larvae of the spotted salamander, Ambystoma maculatum (Shaw, 1802), by determining whether the herbicides induced different morphologies, …

Habituation To Auditory Stimuli By Captive African Elephants (Loxodonta Africana), Sarah Elizabeth Goodyear, Bruce A. Schulte

Biology Faculty Publications

Habituation is a major concern for the development of effective, long-term human-wildlife conflict mitigation and zoo enrichment programs. Elephants are cognitive species that exhibit many types of learning, such as associative, social, and insight learning. However, no study has examined the habituation process in elephants. Elephants possess a well-developed sensory system and may habituate to stimuli that could be used for enrichment and/or management. The aim of this study was to examine their habituation process in response to repeated presentations of two auditory stimuli: buzzing by a disturbed beehive and the sound created by banging on pots and pans, and …

Ua94/6/15 Student / Alumni Personal Papers Wku Dorris Hutchinson, Wku Archives

WKU Archives Collection Inventories

Correspondence and publications created by and about the Dorris Hutchison during her time at Sloan-Kettering Institute.

Corbicula Fluminea Food Web Ecology: An Experimental Transplant Approach In A Karst Riverine System, Autumn Smith

Mahurin Honors College Capstone Experience/Thesis Projects

The Asiatic clam Corbicula fluminea is a filter-feeding habitat generalist. Carbon isotopic composition (δ13C) of C. fluminea body tissue was compared between reaches of Kentucky’s upper Green River that differed in Cladophora growth. Corbicula fluminea from an upstream reach with little Cladophora was translocated to a downstream reach with high Cladophora levels. Individuals from both reaches were placed in mussel silos in the same downstream reach in autumn 2012 and again in 2013 for 77 and 119 days, respectively. Flow during 2012 consisted of no high flow events until late autumn. Flow patterns in 2013 were consistently higher and more …

Quality Change And Thermal Inactivation Of Escherichia Coli O157:H7 In Non-Intact Beef And Veal Patties By Double Pan-Broiling, Kawang Li

Mahurin Honors College Capstone Experience/Thesis Projects

Escherichia coli O157:H7 (ECOH) may translocate from meat surfaces to internal tissues during grinding processes. This study evaluated the inactivation of ECOH in ground beef and veal by cooking to various internal temperatures (55°C, 62.5°C, 71.1°C, and 76°C). Grounded beef/veal were inoculated with 6 log ECOH and prepared into patties, stored aerobically (4°C, 4 -days) before double-pan-broiling to the internal temperatures mentioned above with a three-minute rest. Samples’ color were monitored, which changed significantly during storage and cooking. Pathogen concentration was measured by plating the homogenized sample on TSA and McConkey agar. The pathogen population was below detectable limit when …

Ua66 Ogden College Of Science & Engineering Newsletter, Cheryl Stevens, Dean

Ogden College of Science & Engineering Publications

No abstract provided.

Trophic Dynamic Interactions In A Temperate Karst River, Elizabeth Malloy

Masters Theses & Specialist Projects

Surface streams in karst landscapes are often characterized by high nutrient levels due to incomplete filtration through series of innumerable, below-ground conduits. Seasonal growth of the filamentous alga, Cladophora, is typically associated with nutrient-rich waters. This research compared macroinvertebrate food web structure between riverine reaches with contrasting underlying karst topography, nutrient levels, and Cladophora cover during summer 2012 and autumn 2013. Recent work in these reaches found a high correlation between Cladophora cover and nutrient content, particularly nitrate. Four questions were addressed during this study: 1. Do longitudinal trends in algal and consumer δ13C values relate to decreased DIC availability …

Interactions Of Exyra Ridingsii, Riding's Pitcherplant Looper Moth And Sarracenia Flava , The Yellow Pitcher Plant, Christine A Ricci

Masters Theses & Specialist Projects

1. Exyra ridingsii is a host specific moth that spends its entire immature life cycle in the fire dependent Sarracenia flava pitcher plant. Sarracenia flava requires acidic, moist soil that undergoes frequent burns. 2. Habitat selection and the effects of fire as well as other habitat characteristics were examined for E. ridingsii during this study. 3. For this study, five sites in the Croatan National Forest were surveyed four times each year for two years. Only one site had no disturbances since 2009; the remaining four sites were evenly split with two having had burns occur in them and two …

Landscape Genetics Of The Endangered California Tiger Salamander (Ambystoma Californiense) In The Los Vaqueros Watershed, Ryan Neal Vincent

Mahurin Honors College Capstone Experience/Thesis Projects

Genetic diversity is essential for maintaining healthy biological systems, and dispersal-mediated gene flow increases genetic diversity by introducing new alleles to a gene pool. Populations that frequently experience gene flow will show characteristic similarities in allele frequencies. Measuring genetic diversity among many populations across a landscape has proven to be a powerful approach for assessing the ways that habitat discontinuities may affect patterns of gene flow, and in turn, influence allele frequencies and population dynamics. This study examines the landscape-level population genetic structure of the California tiger salamander, Ambystoma californiense, within the Los Vaqueros Watershed of Contra Costa County, …

Functional And Expression Analysis Of A Novel Basement Membrane Degrader In Drosophila Melanogaster, Christopher J. Fields

Mahurin Honors College Capstone Experience/Thesis Projects

SNUTS is a protein coding gene present in Drosophila melanogaster whose product contains conserved domains that are present in a range of eukaryotic organisms. The SNUTS protein is made up of four domains, two Sterile Alpha Motif (SAM) domain, and two Plant Homeodomains (PHD). The biological function of SNUTS or the various domains is largely unknown. One study demonstrated that SNUTS was important for proper development of the stem cell niche. In the present study data from both overexpression and downregulation of Snuts and the resulting phenotypes are presented. Data supporting potential mechanisms resulting in the phenotype are also presented. …

Efficacy Of An Electronic Scarecrow On 4 Mammalian Crop-Raiders In Limpopo Province, South Africa, Merrie Renee Richardson

Masters Theses & Specialist Projects

In South Africa, 2 primate species, Chacma baboons (Papio ursinus) and vervet monkeys (Chlorocebus pygerythrus), and 2 nocturnal mammals, Cape porcupine (Hystrix africaeaustralis) and bushbuck (Tragelaphus scriptus), are among many species of crop raiders. Currently, cost-effective, non-lethal solutions are lacking. From June through December 2012, I installed novel electronic scarecrows on two commercial citrus orchards and a private reserve and used video-recording remote cameras to assess cropraiders’ reactions to them in Limpopo Province, South Africa. I used focal animal sampling data from treatment and control group animals to examine differences in activity …

Melanin As An Oto-Protective Pigment In Two Fish Species: Poecilia Latipinna And Cyprinus Carpio , Bethany N. Coffey

Masters Theses & Specialist Projects

Melanin is the dark pigment found in most organisms that gives color to the skin, hair, feathers, and eyes of vertebrates. While melanin is known to also be present in the stria vascularis of the mammalian cochlea, its function in the inner ear is still unknown. Some previous studies have indicated that melanin may serve to protect the mammalian ear from hearing loss. Minimal previous research on melanin within the inner ears of fishes has been conducted. In this study, the melanin levels in the inner ears of different color morphs of two fish species (Poecilia latipinna and Cyprinus …

Identification And Characterization Of Microbial Contaminants And Associated Bacterial Viruses In Bioethanol Production Facilities To Suggest A Potential Alternative To Antibiotic Treatment, Charles Austin Coomer

Mahurin Honors College Capstone Experience/Thesis Projects

In recent years, bioethanol has received worldwide interest as a bioenergy source. This interest has stimulated the production of substantial quantities of ethanol annually. However, the inability to produce bioethanol under sterile conditions plagues the industry, resulting in frequent microbial contamination. Bacterial contamination is one of the more challenging problems facing the bioethanol industry because contaminants drastically lower ethanol yield. Conventional methods of antibiotic application to eradicate bacterial contaminants are expensive and prohibitive. A more sustainable approach to control bacterial contamination of industrial ethanol fermentation systems is to use bacteriophages (phage). The goal of this research was to create a …

The Reaction Of Platinum Triamine Complex With Different Dna And Protein Complexes, Morgan Gruner

Mahurin Honors College Capstone Experience/Thesis Projects

The platinum compound Cl [Chloro[N,N-diethyldiethylenetriamine] Platinum(II) Chloride] was synthesized and reacted with N-acetylmethionine (N-AcMet) and guanosine 5’-monophosphate (5’-GMP). Previous experiments show that N-AcMet reacts kinetically faster with the central platinum atom and that 5’-GMP bonds slower yet stronger. When Cl was reacted with N-AcMet the N-AcMet displaced the chloride ion as expected. When Cl was reacted with 5’-GMP the 5’-GMP binds to the chloride ion and the reaction is finished. Yet, when 5’-GMP was added in the solution already containing N-AcMet, the N-AcMet was not displaced as predicted. Through ­¹­H NMR Spectroscopy and Mass Spectrometry we observed that …

Correlation Of Environmental Risks With The Prevalence Of Essential Hypertension And Chronic Cardiac Disease In Kasigau, Kenya, Addie Dodson

Mahurin Honors College Capstone Experience/Thesis Projects

Cardiovascular disease (CVD) is a chronic non-communicable disease (NCD) that is the leading cause of death across the world. In developing nations, like Kenya, the prevalence of NCDs like CVD are on the rise. Hypertension is the major risk factor for CVD and can be influenced by various environmental risk factors, like physical inactivity, unhealthy diets, tobacco use, and alcohol use. Though these are known factors that can affect blood pressure in developed nations, research over the prevalence of essential hypertension (EH) in developing countries is low. In an area in southeast Kenya known as Kasigau, there is a high …

Examining Human Perception Of Elephants And Large Trees For Insights Into Conservation Of An African Savanna Ecosystem, Adam Edge

Mahurin Honors College Capstone Experience/Thesis Projects

In savanna ecosystems, African elephants (Loxodonta africana) and large trees such as marula (Sclerocarya birreaand) and knobthorn (Acacia nigrescens) have ecological and human value; however, elephants have a large impact on favored trees, motivating the need for ecological conservation strategies. This study examined the perceptions of tourists and residents towards elephants, large trees, and other relevant factors for management purposes. In the Associated Private Nature Reserves, South Africa, a survey was distributed to tourists and residents to determine perceptions of elephants of different age classes, group sizes and sex, and toward savanna habitat impacted …

Allelic Variability In The Cyp11b2 C344t Single Nucleotide Polymorphism From A Cohort Of East Africans, Spencer Wright

Mahurin Honors College Capstone Experience/Thesis Projects

Non-communicable disease (NCD), in particular cardiovascular disease, is a significant problem in developing countries. Essential hypertensions (EH) is a leading risk factor for vascular disease and while managing EH in developing countries is considered a high global priority, few studies exist from third world populations. From a cohort of Kenyans living in the Kasigau region, we have investigated the allele frequency of a single nucleotide polymorphism (SNP) previously reported to correlate with salt-sensitive EH. The SNP being investigated is aldosterone synthase CYP11B2 C344T (rs1799998), a polymorphism in the renin-angiotensin system (RAS). The C344T polymorphism is located in the promoter region …

The Isolation And Characterization Of Tirotheta9, A Novel A4 Mycobacterium Phage, Sarah Schrader

Mahurin Honors College Capstone Experience/Thesis Projects

Bacteriophages are the most abundant biological entities on earth, yet relatively few have been characterized. In this project, a novel bacteriophage was isolated from the environment, characterized, and compared with others in the databases. Mycobacterium smegmatis, a harmless soil bacterium, served as the host and facilitated the enrichment and recovery of mycobacteriophages. A single phage type was purified to homogeneity and named TiroTheta9 (TT9). Electron microscopy revealed that the phage particles have icosahedral heads 58 ± 2 nm in diameter and tails 174 ± 5 nm in length. The TT9 genomic DNA was purified and sequenced using 454 pyrosequencing …

Characterization Of A Mutant Bacteriophage That Overcomes An Antitermination Defect In E. Coli Rna, Kimberly Baugh

Mahurin Honors College Capstone Experience/Thesis Projects

Mutations in the highly conserved zinc-binding domain of the β’ subunit of E.coli RNA polymerase prevent the growth of phage that use a unique RNA-based mechanism of transcription antitermination. Here, we describe the isolation and characterization of a mutant phage that overcomes this block. The genome of the mutant only differs from the parental phage by 2 nucleotides. Close inspection of the sequences surrounding the mutation suggested that a new promoter had been created. This was confirmed by cloning the potential promoter sequences into a promoter probe expression vector. We hypothesize that the new promoter permits the expression of phage …

Level Of Uv-B Radiation Influences The Effects Of Glyphosate-Based Herbicide On Fitness Of The Spotted Salamander, Nicholas A. Levis

Masters Theses & Specialist Projects

Numerous causes have been implicated in contributing to amphibian population declines since the 1980's, with habitat modification, ultraviolet radiation (UV-B) and environmental contaminants (such as glyphosate-based herbicide) being among the most common. This study identifies the effects of a generic glyphosate-based herbicide (GLY- 4 Plus) on mortality, immune function, body condition, and morphological plasticity of larvae of the spotted salamander (Ambystoma maculatum) under conditions that reflect open and closed canopy light regimes. Larval salamander responses to glyphosate-based herbicide varied depending on UV-B conditions. In general, it appears that an open canopy (i.e. greater UV-B exposure) may confer fitness benefits. In …

Wire Netting Reduces African Elephant (Loxodonta Africana) Impact To Selected Large Trees In South Africa, Kelly Derham

Masters Theses & Specialist Projects

African elephants (Loxodonta africana) are ecosystem engineers in that they substantially alter the environment through their unique foraging and feeding habits. At high densities, elephants potentially have negative impacts on the environment, specifically to large trees. Because of this, recent increases of elephants in the Associated Private Nature Reserves (APNR) on the Western Boundary of Kruger National Park, South Africa have caused concern regarding the health of several species of tree. My objective was to assess the effectiveness of wrapping protective wire netting around the trunk of the tree in preventing and reducing bark stripping by elephants. 2,668 …