Biology Commons^™

Stable Isotopes And The Ecology And Physiology Of Reptiles, Andrew M. Durso

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

When animals don’t have enough food, they have to “choose” between “spending” their limited energy on themselves or on their offspring. Biologists think that reptiles can make this choice quickly in response to different environments. But, it can be hard to study these choices because it is hard to convert between, for example, the number of eggs laid and the speed of healing a wound. By using stable isotope chemistry, we can collect more detailed and comparable information about how lizards and other animals spend their limited resources than with any other method. For example, lizards in the wild have …

Hybridization, Population Genetic Structure And Gene Expression In The Genus Boechera, Martin Peter Schilling

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

When we look at life on earth, we can see a lot of different life forms, but we still do not fully understand how these different life forms came to be and at which points in time these life forms began to be different enough from each other so we could call them by different names, or species. Some groups of species on earth, especially plants, seem to reproduce with each other, even though they are already very different from each other so that we call them different species. This process is called hybridization, and it can stir up the …

Greater Sage-Grouse Vital Rate And Habitat Use Response To Landscape Scale Habitat Manipulations And Vegetation Micro-Sites In Northwestern Utah, Charles P. Sandford

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The greater sage-grouse (Centrocercus urophasianus; sage-grouse) has been a species of conservation concern since the early 20^th century. The decline of populations has largely been attributed to loss and degradation of sagebrush (Artemisia spp.) habitats. To contribute to the knowledge of sage-grouse ecology and quantify the effectiveness of landscape scale habitat manipulations intended to benefit sage-grouse, I monitored habitat use and vital-rates (i.e., nest and brood success) of 45 sage-grouse females in the Box Ender Sage-Grouse Management Area (SGMA) in northwestern Utah. Using telemetry locations of sage-grouse females with known nest and brood fates, I generated …

The Role Of Orexin Receptors In Diurnal Variations In Learning And Memory, Jacob Christian Blotter

Undergraduate Honors Capstone Projects

The brain's ability to learn and remember is a topic of extensive debate and research. Mammals share many similarities, including the way in which information from the outside world is processed and stored. Mammalian circadian rhythms have long been thought to be essentially involved with these processes. Orexin, a neurotransmitter in the brain, plays a crucial role in arousal and circadian rhythm. This study is designed to explore the brain's ability to process and store information at different times of the circadian period, and to explore the role of orexin by comparing the performance of normal (wild-type) mice and abnormal …

Prenataland Newborn Immunoglobulin Levels From Mother-Child Pairs And Risk Of Autismspectrum Disorders, Judith K. Grether, Paul Ashwood, Judy Van De Water, Robert H. Yolken, Meredith C. Anderson, Anthony T. Torres, Jonna B. Westover, Aimee G. Tallian, Robin L. Hansen, Martin Kharrazi, Lisa A. Croen

Biology Faculty Publications

Background: An etiological role for immune factors operating during early brain development in children with autism spectrum disorders (ASD) has not yet been established. A major obstacle has been the lack of early biologic specimens that can be linked to later diagnosis. In a prior study, we found lower risk of ASD associated with higher levels of maternally-derived total IgG and Toxoplasmosis gondii (Toxo) IgG in newborn blood spot specimens from children later diagnosed with ASD compared to population controls. Methods: We obtained maternal mid-gestational serum specimens and newborn screening blood spots from the California Genetics Disease Screening Program (GDSP) …

Biodiversity, Community Dynamics, And Novel Foraging Behaviors Of A Rich Native Bee Fauna Across Habitats At Pinnacles National Park, California, Joan M. Meiners

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Global concern about honeybee declines has spurred feverish research about the status and protection of this single species, yet our understanding of the ecology and issues impacting thousands of species of native bees lags behind. Pinnacles National Park, America's newest, near Salinas, California, is currently the most densely biodiverse area for native bees known on the planet. Recent work by researchers at Utah State University and the USDA-ARS has documented 479 species of native bees in only 42 square miles of this park. During two years of field studies and 308 collector days, we assembled data on 52,853 bee specimens …

Anthropogenic And Natural Stressors And Their Effect On Immunity, Reproduction, And The Stress Response, Lorin A. Neuman-Lee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Animals must be able to cope with many natural and human-made stressors in order to successfully survive and reproduce. These stressors can come in many forms and are increasing as human activities become more and more prevalent across the globe. In order to cope with these stressors, organisms must allocate limited energy away from processes such as reproduction to mount a stress response. This stress response involves the activation of the hypothalamic-pituitary-adrenal axis and results in a cascade of hormones and down-stream effects, such as changes in reproduction and immune function. In order to understand how reptiles and amphibians cope …

The Role Of Gpr84 In Medium-Chain Saturated Fatty Acid Taste Transduction, Yan Liu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The prevalence of overweight or obese in adults has nearly doubled during the past two decades, and obesity increases the risk of heart disease, diabetes, and even some types of cancer. One of the factors closely linked with the obesity epidemic is overconsumption of dietary fat. Accumulating evidence has supported the existence of the "taste of fat", and more and more studies have focused on identifying the mechanisms of fatty acid detection by gustatory system. In this study, I showed for the first time that medium-chain saturated fatty acids (MCFAs) were able to activate taste cells isolated from mice, and …

An Allometric Approach To Evaluate Physiological And Production Efficiencies In Tree Size For Tart Cherry And Apple Orchard Systems, Zachary T. Brym

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In orchard systems, the size of a tree and the physical structure of its canopy influences how the tree gathers resources and uses them to produce fruit. Smaller orchard trees produce a higher proportion of fruit relative to their size. Small trees also produce higher quality fruit than larger trees. These relationships were demonstrated for apples and tart cherries grown in Utah. In physiological ecology, models called allometries have been developed that explain how the size of wild plants is related to growth, architecture, and reproduction. These models were applied to apple and tart cherry orchard systems and revealed consistent …

Spider Aggregate Glue Sequence Characterization And Expression, Kyle Berg

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Orb-weaving spiders create a glue which is secreted onto the web to capture and retain insects. This glue is made from aggregate protein. Aggregate glue is sticky when wet and can stretch far when pulled at slow speeds, and pull back with a greater force if pulled at high speeds which helps it achieve its purpose as the adhesive that keeps insects in the web. These features also make it an attractive target for applications such as a surgical glue or underwater adhesive. Unfortunately, very little is known about the aggregate glue gene, and knowledge of the genetic sequence is …

Beyond The Urban Stream Syndrome: Organic Matter Budgets For Diagnostics And Restoration Of An Impaired Urban River, Dave M. Epstein, Julia E. Kelso, Michelle A. Baker

Biology Faculty Publications

In response to water quality standard violations linked to excessive organic matter (OM) and a lack of sampling data informing the Total Maximum Daily Load (TMDL), an organic matter budget was created to quantify and identify sources of OM in the lower Jordan River (Salt Lake City, UT). By sampling dissolved, fine, and coarse particulate OM, as well as measuring ecosystem metabolism at seven different sites, the researchers aimed to identify the origin of excess OM, and understand pathways by which different size classes of the OM pool are generated. The dissolved fraction (DOM; 94 %) was found to be …

Presence Of Wolbachia In Sandfly Populations And Correlation With Pesticide Resistance, Cody Bills, Carol Von Dohlen, Katie Weglarz

Student Research Symposium

Leishmaniasis is a serious skin disease, affecting 12 million people worldwide, caused by a protozoan vectored by sand flies. These flies can harbor the bacterium Wolbachia, a microorganism which blurs the line between symbiont and parasite. On one hand, it skews sex ratios in sand fly populations but, on the other hand, it confers certain benefits, specifically increased insecticide resistance. In closely related flies, specifically the mosquito, pesticide resistance is developed when Wolbachia infection rates increase. The range of impacts of Wolbachia on their hosts may offer a secondary control pathway for sand fly populations where pesticide resistance has developed, …

Development Of Archaeal And Algalytic Bacteria Detection Systems, Andrew Walters

Student Research Symposium

Many methods for the production of methane are being developed in response to the growing energy crisis. One such method is the digestion of wastewater algae in a UASB (Up-Flow Anaerobic Sludge Blanket) reactor. In this reactor, algae grown in wastewater treatment facilities can be digested by alga-lytic bacteria into its carbon rich substituents and later used by methanogenic archaebacteria to produce methane.

The objective of this project is to design detection systems that employ specific DNA primers that will precisely target two bacterial groups: alga-lytic and archaeal bacteria. If successful, these systems will allow us to identify the bacteria …

Tag-Team Takeover: Usurpation Of Woodpecker Nests By Western Bluebirds, Sammy Cowell, Hannah Domgaard, Phil Fischer, Teresa Lorenz, Sara Lorscheider, Mariah Panoussi, Lindsey Parrish, Taryn Rodman, Kim Sullivan

Student Research Symposium

Woodpeckers provide important ecological services by excavating nesting cavities that are used by many forest birds and animals. Black-backed woodpeckers (Picoides arcticus) have been declining throughout their range and are now a threatened species. The failure of black-backed woodpeckers to reproduce can lead to a decline of nesting cavities, which in turn can lead to a decline in secondary cavity nesters. One of the challenges black-backed woodpeckers face is displacement from their nesting cavities by aggressive secondary cavity nesters.The western bluebird (Sialia Mexicana) is known to usurp nests, even from its own kind. However, the process by which bluebirds take …

Biology And Management Of Billbugs (Coleoptera: Curculionidae) In Turfgrass, Madeleine Dupuy, Ricardo A. Ramirez

Biology Faculty Publications

Billbugs (Coleoptera: Curculionidae: Sphenophorus spp.) are a complex of weevil pests affecting turfgrass throughout the United States. Billbug larvae cause damage by feeding in stems, on roots, and on the crowns of turf, causing severe discoloration and eventual plant death. Monitoring efforts have focused on nondestructive pitfall sampling of ground-active billbug adults and on destructive sampling using soil cores for larval stages in the soil. Given the cryptic nature of the susceptible larval stages, billbugs are typically managed by preventive applications of long-residual, systemic insecticides, including neonicotinoids and anthranilic diamides. Despite knowledge of effective management practices including pest-resistant turf varieties, …

A Continuous Correlated Beta Process Model For Genetic Ancestry In Admixed Populations, Zachariah Gompert

Biology Faculty Publications

Admixture and recombination create populations and genomes with genetic ancestry from multiple source populations. Analyses of genetic ancestry in admixed populations are relevant for trait and disease mapping, studies of speciation, and conservation efforts. Consequently, many methods have been developed to infer genome-average ancestry and to deconvolute ancestry into continuous local ancestry blocks or tracts within individuals. Current methods for local ancestry inference perform well when admixture occurred recently or hybridization is ongoing, or when admixture occurred in the distant past such that local ancestry blocks have fixed in the admixed population. However, methods to infer local ancestry frequencies in …

What, If Anything, Are Hybrids: Enduring Truths And Challenges Associated With Population Structure And Gene Flow, Zachariah Gompert, C. Alex Buerkle

Biology Faculty Publications

Hybridization is a potent evolutionary process that can affect the origin, maintenance, and loss of biodiversity. Because of its ecological and evolutionary consequences, an understanding of hybridization is important for basic and applied sciences, including conservation biology and agriculture. Herein, we review and discuss ideas that are relevant to the recognition of hybrids and hybridization. We supplement this discussion with simulations. The ideas we present have a long history, particularly in botany, and clarifying them should have practical consequences for managing hybridization and gene flow in plants. One of our primary goals is to illustrate what we can and cannot …

Contrasting Soil Nitrogen Dynamics Across A Montane Meadow And Urban Lawn In A Semi-Arid Watershed, Steven J. Hall, Michelle A. Baker, Scott B. Jones, John M. Stark, David R. Bowling

Biology Faculty Publications

Urbanization substantially increases nitrogen (N) inputs and hydrologic losses relative to wildland ecosystems, although the fate of N additions to lawns and remnant grasslands remains contested. In montane semi-arid ecosystems, N cycling is often closely coupled to snowmelt (the dominant period of infiltration) and snow cover, which impact soil temperature and moisture. Here, we compared soil N dynamics between a fertilized and irrigated urban lawn and nearby riparian meadow in Salt Lake City, Utah during a snow manipulation experiment. Snow removal increased freeze/thaw events but did not affect N pools, microbial biomass, denitrification potential, or soil oxygen (O2). Mineral N …

Herbivore Density Mediates The Indirect Effect Of Herbivores On Plants Via Induced Resistance And Apparent Competition, Ricardo A. Ramirez, Micky D. Eubanks

Biology Faculty Publications

Herbivore-induced plant resistance and apparent competition are two indirect ways herbivores interact. If a less damaging herbivore indirectly suppresses the abundance of a more damaging herbivore via these mechanisms, then plants may ultimately benefit. Changes in herbivore density, however, can dictate the intensity of species interactions and may play a critical role in determining the outcome of plant- and predator-mediated herbivore interactions. We tested the effects of herbivore density on the strength of indirect interactions among phloem-feeding aphids and herbivorous caterpillars and the outcome of these interactions for their shared host plant, cotton (Gossypium hirsutum). We quantified the …

Plant Diseases And Pests In Utah Raspberries, Sean Christensen

Research on Capitol Hill

Very little information exists on pathogens and pests that affect Utah raspberry production. In fact a survey of Utah raspberry growers at the 2015 USU Urban and Small Farms conference showed that 72% said the largest problem they had was with diseases and pests, and 71% of those did not know what the diseases actually were.

Several viruses, bacteria, pests, and nutrient deficiencies can have a large influence on raspberry yield. This survey was designed to raise awareness among Utah raspberry growers, help them to better prepare for, and manage these possible disease problems. This will be increasingly more important …

Beyond The Fiber: Novel Spider Silk Coatings And Adhesives, Danielle A. Gaztambide, Breton A. Day

Research on Capitol Hill

Natural spider silks have long been recognized for their combination of incredible strength and elasticity. Spider silk is more elastic than nylon, tougher than Kevlar, and stronger than steel by weight. Due to an inability to farm spiders, much work has been done to produce spider silks in transgenic hosts for large -scale production. Our work was done using recombinant spider silk proteins produced in transgenic goats and the bacteria E. coli.

More recently spider silks have also been recognized for their biocompatibility and lack of immunogenicity. Spider silks' incredible strength and ability to be implanted safely within the body …

Insecticides Are Not Always The Answer For Combatting Pests In Onion Fields, Harlie Hutchinson

Research on Capitol Hill

Onion thrips are the insect vector of a severe virus in onion, Iris yellow spot virus. The thrips and virus are primary threats to the economic stability of onion production worldwide. Overuse of insecticides to suppress onion thrips has resulted in the development of resistance, reduced performance of insecticides, and reduced onion yields.

There is a compelling desire to find alternatives to better manage these pests. In this study, we assessed onion thrips populations on onions with low and high nitrogen rates, and near and far from corn and wheat, two common neighboring crops in the onion farm-scape.

Stream Water Nitrogen Inputs Reflects Groundwater Across A Snowmelt-Dominated Montane-To-Urban Watershed, Steven J. Hall, Samantha R. Weintraub, David Eiriksson, Paul D. Brooks, Michelle A. Baker, Gabriel J. Bowen, David R. Bowling

Biology Faculty Publications

Snowmelt dominates the hydrograph of many temperate montane streams, yet little work has characterized how streamwater sources and nitrogen (N) dynamics vary across wildland to urban land use gradients in these watersheds. Across a third-order catchment in Salt Lake City, Utah, we asked where and when groundwater vs shallow surface water inputs controlled stream discharge and N dynamics. Stream water isotopes (δ2H and δ18O) reflected a consistent snowmelt water source during baseflow. Near-chemostatic relationships between conservative ions and discharge implied that groundwater dominated discharge year-round across the montane and urban sites, challenging the conceptual emphasis on direct stormwater inputs to …

Development Of Elisa Assay For D1327 Adenovirus, Christopher Peterson, Yohichi Kumaki, Dale L. Barnard

Biology Posters

Adenoviruses are a common cause of upper respiratory tract infections in children and the source of acute respiratory disease outbreaks among military recruits. Named after the human adenoid tissue it was first isolated in, the adenoviridae are non-enveloped, double-stranded DNA viruses with over 50 serotypes1. Yet to date vaccines have been developed for only two serotypes, and no adenovirus antiviral drugs have been approved by the FDA, highlighting the need for more research. In virus research, detection the presence of a particular virus is of especial interest when developing animal or cell models. As human pathogens often do not infect …

The Identification And Characterization Of Bacterial Endosymbionts In The Planthopper Family, Caliscelidae (Sternorrhyncha: Fulgoroidea, Ghazal Abu-Salim, Kathryn Weglarz

Biology Posters

Plant-sap sucking insects with deficient nutritional diets contain symbiotic microorganisms in a specific organ in the abdomen (bacteriome). Such symbionts were discovered to belong to various bacterial lineages. Ongoing genomic research concluded that these symbiotic organisms provide the essential nutrients that are absent in the insect’s diets such as amino acids and vitamins. While the identities and functions of several sap-sucking lineages have been studied, some lineages such as Fulgoroidea are not understood because recent results failed to confirm the presence of the symbiotic microbes even though older microscopy studies identified microbes in the bacteriomes. The objective of this research …

Analysis Of Rocky Mountain Snail (Oreohelix Sp.) Dietary Preference, Michael R. Bernard, Joseph S. Wilson

Biology Posters

Rocky Mountain snails in the genus Oreohelix go mostly unnoticed beneath layers of leaf litter in the western Mountain ranges. These snails are most common in rocky foothill habitat that consists of high-density deciduous groves of maple and oak. It is in this habitat where a great number of unobserved feeding behaviors occur. While some research indicates that terrestrial snails may prefer to feed on living plants, it is thought that Oreohelix are detritivores, feeding primarily on decomposing plant matter. In this study we investigated Oreohelix diet by designing a food preference experiment. We provided two food sources (Boxelder maple …

Use Of A Mouse Model To Evaluate The Effect Of Statins On The Immune Response To An Influenza Virus Vaccine, Calvin Olsen, Bart Tarbet

Biology Posters

Statins are cholesterol lowering drugs that have shown a profound effect on human health by reducing cardiovascular disease. However, two recent publications in the Journal of Infectious Diseases showed that statin use had a negative impact on the influenza vaccine response in elderly individuals [1, 2]. We propose to evaluate the immune response following vaccination in mice undergoing statin treatment. An initial study will determine the therapeutic window for statin treatment of mice fed a lipid-enriched diet. From the literature this window is expected to be between 21-28 days. That therapeutic window will be used for evaluation of the immune …

Alternate Method Of Phycocyanin Extraction, Will Higham, Matthew Agiro, Jon Y. Takemoto

Biology Posters

Phycocyanin is an abundant protein-pigment complex in many photosynthetic microbes and the feedstock for several emerging products in the food and pharmaceutical industries. The purpose of this project was to research the effectiveness of sonication technology to improve the efficiency and yields of phycocyanin production from the cyanobacterium Spirulina platensis. Sonication is the application of sound energy to agitate and break particles or cells. When used to augment the current methods of phycocyanin production, it has the potential benefit of reducing cell extraction volumes and increasing the yield of phycocyanin. Experiments were conducted to determine the effects of sonication time …

Wolbachia And Sex, Ian J. Aper, Katie Weglarz, Carol Von Dohlen

Biology Posters

Insects with complex life cycles provide an ideal system for investigating the relationship between sex-skewing bacterial symbionts and the secondary loss of sexual reproduction. This research utilized the insect family Adelgidae, a group notorious for having peculiar and complex life cycles. In this family, some species have lost their sexual generation entirely, trapping them in asexual reproduction. Additionally, these insects are known to harbor multiple symbionts, both obligate and facultative. The array of facultative symbionts that have been detected includes the infamous sex-skewing symbiont Wolbachia. This symbiont is known to induce male killing, cytoplasmic incompatibility, and parthenogenesis in insects. Additionally, …

The Identification And Characterization Of Bacterial Endosymbionts In The Planthopper Family, Issidae (Sternorrhyncha:Fulgoroidea), Lina Ghabayen

Biology Posters

Many insects live on nutrient-poor diets; to compensate, they have evolved obligate associations with microorganisms that are transmitted directly between generations. The bacterial associates of some Hemiptera insects have been identified and understood, but several remain unknown. Our objective is to identify the diversity of bacterial endosymbionts in Issidae using modern microscopy and molecular methods, and compare their identities to known symbionts from related insects. To do so, we will extract DNA from insect samples, amplify bacterial symbiont 16S genes, sub-clone PCR products, sequence the products, and determine their phylogenetic relationships to other insect symbionts and free-living bacteria. Our study …