Biology Commons^™

Fluorescence Intensity And Lifetime Quenching Of Ceria Nanoparticles As Optical Sensor For Tiny Metallic Particles, Effat Samir, Nader Shehata, Ishac Kandas

Biology Faculty Publications

Ceria nanoparticles are studied as optical probe for different types of tiny metallic particles using fluorescence quenching technique. The synthesized ceria nanoparticles are characterized by having formed charged oxygen vacancies, which can be considered as the main receptors for the used tiny metallic particles to be sensed or absorbed. Under near-UV excitation, the visible fluorescent emission intensity is found to be reduced with increasing the concentration of the studied tiny metallic particles in an aqueous solution. To emphasize the optical sensing process, ceria nanoparticles fluorescence lifetime measurements were demonstrated before and after adding the tiny metallic particles. In addition, Stern– …

Condition-Dependence Of Blue Plumage Coverage In Indigo Buntings Passerina Cyanea, Spencer B. Hudson, Travis E. Wilcoxen

Biology Faculty Publications

Nuptial plumage colouration is seemingly favoured by females of avian species with regards to sexual selection. This particular secondary sexual characteristic has been previously shown to be a condition-dependent signal of individual quality among passerines with pigment-based colouration (i.e. yellows and reds). In contrast, relationships between structural plumage colouration (i.e. blues) and aspects of both physical quality and physiological function have been understudied. Using free-living Indigo Buntings (Passerina cyanea) as a study species, we compared the percentage of blue feather coverage to body condition, innate immune responses, antioxidant capacity, stress physiology, reproductive physiology, and …

Allenrolfea Wetland Genetics Data, Paul G. Wolf, Carol A. Rowe, Robert W. Lichvar

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The hydrophyte Allenrolfea occidentalis (S. Watson) Kuntze (iodine bush) is a halophytic shrub of the arid southwest that is listed as a facultative wetland (FACW) species on the National Wetland Plant List. This rating means the species is usually a hydrophyte but occasionally is found in uplands. We tested for genetic (ecotypic) differences between plants sampled from wetlands versus uplands. We used genotyping-by-sequencing (ddRAD-seq) to generate data from 133 plants from 30 locations representing both wetland and upland occurrences for over 1300 loci. Analyses indicated that the strongest signal is differences in geographic distribution: samples that are in close geographic …

Evaluating The Impact Of An Exotic Plant Invasion On Rodent Community Richness And Abundance, Trinity N. Smith, Eric M. Gese, Bryan M. Kluever

Wildland Resources Faculty Publications

Cheatgrass (Bromus tectorum), Russian thistle (Salsola kali), and tall tumblemustard (Sisymbrium altissimum) are nonnative plants widely distributed throughout the desert and shrubsteppe communities of the western United States. The impact of these invaders on plant community structure, form, and function has been well documented, but investigations determining the impacts of this cumulative invasion on terrestrial vertebrates have not been undertaken. Our objective was to assess community-level rodent responses to changes in plant community features, with an emphasis on dominance of invasive plant species. We sampled rodent and plant communities in the Great Basin Desert …

Comparison Of African And North American Velvet Ant Mimicry Complexes: Another Example Of Africa As The 'Odd Man Out', Joseph S. Wilson, Aaron D. Pan, Erica S. Limb, Kevin A. Williams

Biology Faculty Publications

Africa has the most tropical and subtropical land of any continent, yet has relatively low species richness in several taxa. This depauperate nature of the African tropical fauna and flora has led some to call Africa the “odd man out.” One exception to this pattern is velvet ants (Hymenoptera: Mutillidae), wingless wasps that are known for Müllerian mimicry. While North American velvet ants form one of the world’s largest mimicry complexes, mimicry in African species has not been investigated. Here we ask do African velvet ant Müllerian mimicry rings exist, and how do they compare to the North American complex. …

An Examination Of The Prevalence Of Intimate Partner Violence Training In U.S. Medical School Curriculum, Tyson Lumbreras

Research on Capitol Hill

• 1 in 3 women and 1 in 4 men living in the United States experience some form of Intimate Partner Violence or IPV (Black, et al. 2011).
• Although there is some research that examines the role health care professionals play in identifying IPV (Richardson, et al. 2002), there is less research on how effectively they are trained to handle it.
• My research will determine whether medical students are receiving adequate IPV training through comprehensive data on the quality of IPV training across U.S. schools.

Motor Affordance For Grasping A Handrail, D. Mcdannald, M. Mansour, Garrett Rydalch

Research on Capitol Hill

Mere observation of objects around us can potentiate motor action by priming specific areas in the brain. This concept, referred to as the affordance effect, suggests that humans put viewed objects into motor terms automatically. Such automated linking of observations to action offers potential advantages to interact with our environment quickly and efficiently when producing goal-directed movements.

One possible application of this affordance effect includes the rapid balance reactions needed to avoid a fall. In reactive balance control, movements must be extremely fast yet simultaneously appropriate for a given environment (e.g. quickly grasping a nearby handrail to avoid a fall). …

Testing Rearing Diets For A New Invasive Insect Pest In Utah, The Brown Marmorated Stink Bug, James Withers, Loren Linford

Research on Capitol Hill

The brown marmorated stink bug (BMSB), Halyomorpha halys, is an invasive insect from Asia. It has caused millions of dollars in damage to fruit, vegetable, ornamental, and field crops since its arrival in North America, and can be a severe nuisance pest when it congregates on human structures to overwinter. The BMSB caused $37 million of apple crop damage in the Mid-Atlantic Region in 2007 to 2010. To study the insect, effective rearing methods are needed. Previous research (Funayama 2004 & 2006; Medal et al. 2012) showed that carrot, raw peanut and soybean increased rearing efficiency. Recent lab experience …

The Effect Of Gender And Socioeconomic Factors On Reporting Of Concussions Among Ncaa Student-Athletes, Joshua Hansen

Research on Capitol Hill

Concussions are traumatic brain injuries that result from “brain shaking” as a result of transmit force to the head. Concussions result in immediate and transient post-traumatic impairment of neural functions which lead to both psychological and physiological symptoms.

As knowledge of the long-term implications of these injuries grows, concussions are becoming an increasing health concern worldwide. One subset, sports-related concussions, are receiving an increasing amount of attention from scientists and health-care practitioners.

More than 3.8 million sport-related concussions occur annually in the United States alone, and some studies suggest that up to 43% of these go unreported and untreated.

How Pesticide Additives Alter Feeding Behavior And Viral Infections In Honey Bees, Matthew Thompson

Research on Capitol Hill

Honey bees are vital to agriculture; the decline of honey bee populations in Utah and worldwide is concerning. Several factors can reduce honey bee health and when they interact can increase in magnitude (Fig. 1). We are investigating the interactions of a pesticide ingredient, organosilicone surfactant (OSS), and viral pathogens.

Goals

• Determine if OSS exposure alters honey bee feeding behavior.
• Determine if OSS synergizes with and increases the negative impact of viruses on honey bees.

Does Requiring Participation In Research Have A Positive Effect On Students’ Perception Of Undergraduate Research?, Mikayla Austin

Research on Capitol Hill

Undergraduate research is not only beneficial to the university and community for all the new ideas it brings to light, but plays an important role in student development.

Studies have shown that students who are involved in research as undergraduates are proficient in:

• Critical thinking
• Communication
• Confidence
• Problem solving

There have been many studies conducted on the best ways to get students involved in research in order to gain these benefits, most of which are based around increasing awareness.

My research is focused on the impact of bringing research into the classroom and requiring students to participate. Will this increase …

Transplanting A Bacterial Immune System: Determining The Function Of A Novel Crispr System, Riannon Smith, Melena Garrett

Research on Capitol Hill

CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) loci and cas (CRISPR-associated) genes provide adaptive immunity (see panel below) in bacteria and have recently been repurposed for genome editing.

Systems are structurally and functionally diverse.

• 2 classes, 6 types, 33 subtypes
• Very few have been studied experimentally
• None of the Type IV systems have been characterized

Portable Electric Fencing For Bear Deterrence And Conservation, Tom S. Smith, Bryan Hopkins, John Gookin, Samantha Thompson

Human–Wildlife Interactions

Although bear-inflicted (Ursus spp.) human fatalities are rare in North America, human injuries, property damage, and bear mortalities occur wherever bears and humans commingle. We investigated the efficacy of portable electric fencing systems for bear deterrence under a variety of environmental conditions in the lab and field. Our results showed that the bear deterrent systems we evaluated were effective in protecting humans, their food, and property from bears >99% of the time. Herein, we discuss the benefits of using electric fencing, reasons why fences sometimes fail, and provide guidance regarding the most effective implementation of the systems we evaluated. …

Species Composition And Temporal Patterns Of Wildlife-Vehicle Collisions In Southwest Virginia, Usa, James A. Vance, Walter H. Smith, Gabrielle L. Smith

Human–Wildlife Interactions

Mitigating wildlife–vehicle collisions (WVCs) is becoming a major wildlife conservation focus, particularly in areas characterized by increased anthropogenic development. Concomitantly, wildlife managers and transportation planners need better information regarding spatiotemporal patterns of WVCs to develop measures that mitigate negative impacts on wildlife. To address this need, in 2015 we conducted a yearlong WVC study in the Appalachian Mountains of Virginia, USA to determine the species composition of WVCs across mammals, birds, and herpetofauna. In addition, we compared patterns of WVC road mortalities across 2 adjacent routes with different vehicle traffic volumes and evaluated the relationships between temporal variations in WVC …

Black Bears Recolonizing Historic Ranges: Indiana Human–Bear Interactions, Bradford J. Westrich, Emily B. Mccallen, Geriann Albers

Human–Wildlife Interactions

Over a century after extirpation from Indiana, USA, 2 American black bears (Ursus americanus) were confirmed in the state during the summers of 2015 and 2016. The first bear encountered a public and management agency unaccustomed to living with large carnivores, which resulted in intentional and unintentional feedings, habituation, and ultimately its euthanasia. The Indiana Department of Natural Resources (DNR) attempted to learn from this encounter and began preparing for the next transient black bear. Education materials were created to help minimize human–bear interactions, promote living safely with bears, and inform about what to do when encountering a …

The Role Of Climate In The Dynamics Of Annual Plants In A Chihuahuan Desert Ecosystem, Danielle D. Ignace, Nancy Huntly, Peter Chesson

Biology Faculty Publications

Question: What is the role of temporal climate fluctuations in the dynamics of desert winter annual plants in the Portal Bajada, and in the sustained irruption of the non-native annual plant species, Erodium cicutarium?

Field site: Portal Bajada, San Simon Valley, Arizona, USA.

Methods: We counted plants at flowering over a 21-yeaer period on twelve permanent plots and related these numbers to weather data collected at an on-site weather station, supplemented by observations from the National Climate Data Center. Specific summary climate variables considered most relevant to annual plant biology were developed as candidate predictors of plant response variables. …

The Three Creeks Allotment Consolidation: Changing Western Federal Grazing Paradigms, Taylor Payne

Human–Wildlife Interactions

The federal government owns approximately 47% of all land in the western United States. In the state of Utah, about 64% of the land base is managed by the federal Bureau of Land Management (BLM) and the U.S. Forest Service (USFS). The government has historically issued permits to owners of private lands to allow the owners to graze their livestock on public lands. The permits (allotments) are generally of 10-year duration and allow for an annual season of use. In some cases, continued and repeated historical annual grazing practices may not be ideal for permit holders and their communities nor …

Conservation Of Threatened Canada-Usa Trans-Border Grizzly Bears Linked To Comprehensive Conflict Reduction, Michael F. Proctor, Wayne F. Kasworm, Kimberly M. Annis, A. Grant Machutchon, Justin E. Teisberg, Thomas G. Radandt, Chris Servheen

Human–Wildlife Interactions

Mortality resulting from human–wildlife conflicts affects wildlife populations globally. Since 2004, we have been researching conservation issues and implementing a comprehensive program to reduce human–bear conflicts (Ursus spp.; HBC) for 3 small, fragmented, and threatened grizzly bear (U. arctos) populations in the trans-border region of southwest Canada and northwest USA. We explored the temporal and spatial patterns of conflict mortality and found that HBC contributed significantly to the threatened status of these populations by causing decline, fragmentation, and decreased habitat effectiveness. Our program to reduce HBCs primarily included strategic private lands purchased to reduce human density in …

Managing Wildlife Means Managing Information, Carl W. Lackey

Human–Wildlife Interactions

No abstract provided.

Investigation Of Conical Spinneret In Generating More Dense And Compact Electrospun Nanofibers, Aya Hamed, Nader Shehata, Mohammad Elosairy

Biology Faculty Publications

Electrospinning is an important, widely used process to generate nanofibers. However, there is still an open window for different designs of both spinneret and collector electrodes to be investigated. This paper introduces the impact of new design of conical spinneret electrode on the generated electrospun nanofibers. In this work, the conical feeder is used to generate electrospun Poly(vinyl alcohol) (PVA) nanofibers, and being compared to the traditional needle feeder at the same processing conditions. The jet’s mechanism is simulated using discrete bead model along with estimated calculations of both deposition area and fiber radius. The electric field distribution that is …

Data From: Target Sequence Capture Of Nuclear-Encoded Genes For Phylogenetic Analysis In Ferns, Paul G. Wolf, Tanner A. Robison, Matthew G. Johnson, Michael A. Sundue, Weston L. Testo, Carl J. Rothfels

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Premise of the study: Until recently, most phylogenetic studies of ferns were based on chloroplast genes. Evolutionary inferences based on these data can be incomplete because the characters are from a single linkage group and are uniparentally inherited. These limitations are particularly acute in studies of hybridization, which is prevalent in ferns; fern hybrids are common and ferns are able to hybridize across highly diverged lineages, up to 60 million years since divergence in one documented case. However, it not yet clear what effect such hybridization has on fern evolution, in part due to a paucity of available biparentally inherited …

Fates Of Rare Species Under Siege From Invasion: Persistence Of Coccinella Novemnotata Herbst In Western North America Alongside An Invasive Congener, Edward W. Evans

Biology Faculty Publications

Species invading new geographic regions may threaten continued existence of similar, indigenous relatives, particularly those species whose rarity may reflect an already tenuous existence. The spectacular colonization of North America in recent decades by Coccinella septempunctata L. has generated widespread concern over potentially adverse effects on population viability of native species of ladybird beetles (Coccinellidae). Coccinella novemnotata Herbst in particular has been hypothesized to be at great risk, as this species apparently dwindled in numbers across much of North America during the twentieth century. Here results of sampling diverse habitats over three decades are examined to address the fate of …

Heritable Sperm Chromatin Epigenetics: A Break To Remember, Ralph G. Meyer, Chelsea C. Ketchum, Mirella L. Meyer-Ficca

UAES Publications

Sperm chromatin not only has a unique structure to condense and protect the paternal DNA in transit, but also provides epigenetic information that supports embryonic development. Most of the unique sperm nuclear architecture is formed during the sweeping postmeiotic chromatin remodeling events in spermiogenesis, where the majority of nucleosomes are removed and replaced by protamines. The remaining histones and other chromatin proteins are located in structurally and transcriptionally relevant positions in the genome and carry diverse post-translational modifications relevant to the control of embryonic gene expression. How such postmeiotic chromatin-based programming of sperm epigenetic information proceeds, and how susceptible the …

Genetic Differentiation Of Two Species Of Buckwheat (Eriogonum), Jenessa Blotter Lemon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Limestone mining in the San Franicso Mountain Range of west central Utah threatens the survival of a rare endemic species of buckwheat (Eriogonum soredium). This species is an edaphic endemic, only found growing on the outcrops of the Ordovician limestone mines in the area. Eriogonum soredium is a candidate for governmental protection under the Endangered Species Act (ESA). However, a common, widespread buckwheat (Eriogonum shockleyi) appears to be closely related to the narrow endemic. The genetic relatedness of the rare and and common species will greatly influence the decision of United States Fish and Wildlife Service …

Ecology Of Greater Sage-Grouse Inhabiting The Southern Portion Of The Rich-Morgan-Summit Sage-Grouse Management Area, M. Brandon Flack

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocercus urophasianus; sage-grouse) are sagebrush obligates and are therefore considered to be key indicators of sagebrush ecosystem health. Sage-grouse populations have declined range-wide over the last century due to loss and fragmentation of sagebrush (Artemisia spp.) habitats. Sage-grouse populations found in large intact sagebrush landscapes are considered to be more resilient, however, some small isolated populations persist and thrive in fragmented landscapes. Because of Utah’s unique topography and geography, sage-grouse habitat is discontinuous and populations are naturally dispersed throughout the state in suitable intact blocks or in disconnected islands of sagebrush habitat. Thus, Utah populations …

The Biogeography And Nesting Biology Of Anthophora, With A Revision And Phylogeny Of The Anthophora (Micranthophora), Michael C. Orr

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bees are necessary pollinators for a vast array of different plants, including many which we rely on for food. In order to grow sufficient crops to feed the world’s growing population, we need to make sure our crops are visited by the most effective possible pollinators. However, this is complicated by the fact that there are over 4,000 bee species in North America, many of which vary in their pollination effectiveness and are difficult to identify. My dissertation’s first two data chapters focus on classifying the species of the xeric solitary bee group Anthophora subgenus Micranthophora, including seven newly …

Seasonal Distribution Of Sage-Grouse In Hamlin Valley, Utah And The Effect Of Fences On Grouse And Avian Predators, Heather Hedden Mcpherron

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) numbers have declined throughout the western US and are considered a species of concern in most of the eleven states that are within their range. Sage-grouse habitats have been reduced by approximately 44% since European settlement of the Western United States began (Miller et al. 2011). Loss of habitat has contributed to an average decline of sage-grouse populations by 33% across the range (Connelly and Braun 1997). To expand our knowledge of this species, I monitored 16 radio-collared sage-grouse captured from four leks in Hamlin Valley, Utah, USA in 2011 and 2012 …

Hydrogen Cyanide Produced By Pseudomonas Chlororaphis O6 Exhibits Nematicidal Activity Against Meloidogyne Hapla, Beom Ryong Kang, Anne J. Anderson, Young Cheol Kim

Biology Faculty Publications

Root-knot nematodes (Meloidogyne spp.) are parasites that attack many field crops and orchard trees, and affect both the quantity and quality of the products. A root-colonizing bacterium, Pseudomonas chlororaphis O6, possesses beneficial traits including strong nematicidal activity. To determine the molecular mechanisms involved in the nematicidal activity of P. chlororaphis O6, we constructed two mutants; one lacking hydrogen cyanide production, and a second lacking an insecticidal toxin, FitD. Root drenching with wild-type P. chlororaphis O6 cells caused juvenile mortality in vitro and in planta. Efficacy was not altered in the fitD mutant compared to the wild-type but was reduced in …

Stability Of Equilibria In Quantitative Genetic Models Based On Modified-Gradient Systems, Benjamin J. Ridenhour, Jerry R. Ridenhour

Mathematics and Statistics Faculty Publications

Motivated by questions in biology, we investigate the stability of equilibria of the dynamical system x′ = P(t)∇f(x) which arise as critical points of f, under the assumption that P(t) is positive semi-definite. It is shown that the condition ∫^∞λ₁(P(t)) dt = ∞, where λ₁(P(t)) is the smallest eigenvalue of P(t), plays a key role in guaranteeing uniform asymptotic stability and in providing information on the basis of attraction of those equilibria.

Promoting Critical Thinking In General Biology Courses: The Case Of The White Widow Spider, Joseph S. Wilson

Journal on Empowering Teaching Excellence

It is generally accepted that critical thinking is an important and, likely, essential, component of success in college and beyond. Despite the unanimity, only a low percentage of students in the U.S. can demonstrate critical thinking proficiency on standardized exams. This phenomenon may result from instructors using a reductionist view of critical thinking and focusing on learning processes rather than on evaluation of intellectual resources. In general biology courses, I use a non-threatening, active-learning, group activities to promote critical thinking. For example, students are presented with an email from a member of the community and asked to formulate a response …