Biology Commons^™

From Mechanisms To Management: Implications Of Biogeochemical Controllers And Land Management For Soil Carbon Cycling And Storage, Savannah R. Adkins

All Graduate Theses and Dissertations, Fall 2023 to Present

Climate change and its cascading effects are driven by increases in atmospheric carbon dioxide (CO₂). Many climate solutions exists to remove this excess carbon (C) from the atmosphere, and soils, in particular, represent one of the few win-win solutions. Soils play a vital role in the global C cycle because they store more C than plants and the atmosphere combined, however, they also release more CO₂ annually than fossil fuel combustion (a major contributor to accelerating climate change). Therefore, preventing CO₂ loss from soil could help slow the progression of climate change, and increasing overall soil …

Data Accompanying "Landscape Composition Surrounding Restoration Projects Modulates Use By Wildlife: A Case Study Of Mule Deer In Utah", Jaylin Solberg

Browse all Datasets

With mule deer (Odocoileus hemionus), hereafter, deer, populations in decline, wildlife managers have increased their efforts to improve factors that limit population growth. In the State of Utah (hereafter, Utah), these efforts have included habitat restoration which is expected to improve environmental conditions for deer. Some of these efforts include pinon-juniper removal, prescribed burning, and spraying of invasive plant species. Although previous work has demonstrated the local impacts of restoration on deer populations, it is unknown how the environmental conditions in the landscape surrounding restoration treatments may modify local restoration impacts. Identifying how both local and landscape-scale conditions influence deer …

The Genome Sequence Of The Hemlock Woolly Adelgid, Adelges Tsugae Annand 1924, Bryan M.T. Brunet, Dustin T. Dial, Gaelen R. Burke, Carol D. Von Dohlen, Julia Douglas Freitas, Haley Sanderson, Afiya R. Chida, Samantha J. Jones, Fergal J. Martin, Leanne Haggerty, Stephen W. Scherer, Ioannis Ragoussis, Steven J.M. Jones, Robert G. Foottit, Nathan P. Havill

Biology Faculty Publications

The genome of the hemlock woolly adelgid (Adelges tsugae) is presented in 10 chromosomal pseudomolecules along with 132 unplaced scaffolds for a combined length of 216.56 Mb. The genome is highly contiguous with an N50 of 20.54 Mb and its longest scaffold 37.41 Mb in length. The assembly recovered 97.7% of benchmarked universal single-copy Hemiptera orthologs (BUSCO) with an overall completion score of 98.6%. On the basis of chromosomal synteny with other aphid genomes, the hemlock woolly adelgid’s genome is composed of eight autosomes and two sex (X) chromosomes. Annotation of the assembly identified 11,800 coding genes, 1,930 …

A Preliminary, Photography-Based Assessment Of Bee Diversity At The Finca Botánica Organic Farm In The Central Pacific Coast Of Ecuador, Joseph S. Wilson, Tyler M. Wilson, Chris Packer, Orlando Pacheco

Biology Faculty Publications

Understanding wild bee diversity is critical for pollinator conservation, particularly in understudied tropical regions like coastal Ecuador. This preliminary study provides a photography-based assessment of bee diversity at Finca Botánica, an organic and regenerative farm on Ecuador’s central Pacific coast. Over a 10-day survey in December 2024, researchers documented 51 bee species across four families, with Apidae being the most represented. The study highlights a predominance of solitary, ground-nesting bees and a lower-than-expected diversity of Meliponini (stingless bees) and Euglossini (orchid bees) compared to other regions of Ecuador. Many species were found in forest patches, ecological corridors, and cover-cropped maize …

Systematics, Evolution, And Species Delimitation Of Ichneumonidae (Hymenoptera) Based On Ultraconserved Element Phylogenomics, Brandon Ross Claridge

All Graduate Theses and Dissertations, Fall 2023 to Present

The diversity of life on Earth is highly skewed towards a few key groups of organisms. Parasitoid wasps are among the most species-rich yet understudied organisms on our planet. Ichneumonidae, the largest parasitoid wasp family, includes 25,000 known species out of an estimated total of 100,000, far exceeding the nearly 70,000 species of vertebrates. As parasitoids, ichneumonids lay a single egg onto or inside their hosts, and the resulting ichneumonid larva consumes its host, ultimately killing it. Most hosts are the larvae or pupae of moths, butterflies, flies, beetles, and other wasps, including many pest species injurious to agriculture and …

Morphological Correlates Of Limaxivory In Contia (Serpentes: Dipsadinae) Compared To Related Taxa Carphophis And Diadophis, Lauren A. Houstoun

All Graduate Theses and Dissertations, Fall 2023 to Present

Differences in the skull and musculature of snakes can often be linked to their diet. Snakes that eat snails and slugs have evolved independently at least four times. Several skull features of the skull have already been reported in snakes that eat snails, specifically those in the genus Pareas and some Dipsadini. Among those features are a shorter, more compressed snout and, in some species, asymmetry of the lower jaw. However, little attention has been paid to snakes that specialize only on slugs (limaxivores). Unlike the snail-eating members of the Pareidae and Dipsadini, limaxivores lack the morphological traits associated with …

The Effects Of Temperature And Cardiotonic Steroids On Cardiac Function And Metabolism In Snakes, Hannah Wilson

All Graduate Theses and Dissertations, Fall 2023 to Present

The function of the heart provides a window into the physiology of vertebrates and a means of evaluating their response to the stresses imposed by diverse activities. I developed a miniaturized instrument to record electrocardiograms (ECGs), using open-source Arduino technology, that a snake can wear as a backpack. The backpack can also be used when the snake is in a metabolic chamber, to record the metabolic rate and ECG simultaneously. I first used the ECG backpack to record the physiology of snakes under different temperature conditions, to verify that the system worked as expected. the backpack was then used on …

Effects Of Elevation, Fire Age, Burn Severity, And Pre-Fire Vegetation On Post-Fire Sagebrush Songbird Communities, William D. Harrod

All Graduate Theses and Dissertations, Fall 2023 to Present

The Sagebrush Biome of western North America has been threatened by a combination of interconnected threats. In the Great and Columbian Basins, a large portion of sagebrush loss has been due to an increase in higher-severity wildfires, caused by invasive annual grasses. As sagebrush declines, numerous wildlife species that rely on the biome have experienced similar trends. Sagebrush-adapted songbirds such as sage thrasher, Brewer's sparrow, and sagebrush sparrow as well as steppe-songbirds, have all experienced population declines. Currently, limited information exists as to how fire severity or recovery affect these songbirds or what resource managers can do to improve their …

The Pharmacology Of Gpr171 Ligands In The Treatment Of Pain: An In Vitro And In Vivo Preclinical Characterization, Max V. Mcdermott

All Graduate Theses and Dissertations, Fall 2023 to Present

Opioids are addictive, ineffective for long-term treatment, readily produce withdrawal and tolerance, and can cause overdose and death. These properties have contributed to an epidemic of addiction and overdose, which continues unabated in the United States. Therefore, new drugs to treat acute and chronic pain are needed. Opioids bind to receptors belonging to a superfamily of proteins called G protein-coupled receptors (GPCRs). GPCRs are the most commonly targeted proteins among FDA-approved drugs. As such, under-researched GPCRs are a viable source of new targets in the field of drug development. One such underexplored GPCR is GPR171. Studies have demonstrated that a …

Pollination And Essential Oil Production Of Lavandula Angustifolia Mill. (Lamiaceae), Riley B. Jackson, Tyler M. Wilson, Joseph S. Wilson, Zabrina Ruggles, Lindsey Topham Wilson, Chris Packer, Jacob G. Young, Christopher R. Bowerbank, Richard E. Carlson

Biology Faculty Publications

Lavandula angustifolia Mill., lavender, is an aromatic plant in the Lamiaceae family. Lavender, which is native to the Mediterranean region but cultivated throughout the world, is an important economic plant. Several studies have investigated two aspects of this aromatic plant: (1) which pollinators, particularly bees, pollinate lavender, and (2) the composition of lavender essential oil. However, little research has been conducted to investigate how pollination affects either the yield or phytochemistry of lavender. The current study, which was conducted in North America, investigates which bee species visit lavender and how pollination affects plant chemistry, specifically the essential oil produced by …

Phylogeny And Historical Biogeography Of Uroleucon Aphids, Audrey Michelle Mullen

Undergraduate Honors Capstone Projects

The aphid genus Uroleucon (Aphididae: Aphidinae: Macrosiphini) is a diverse group of about 230 species found globally in most temperate regions, principally in the northern hemisphere. Only 23 species are described from the southern hemisphere, in South American temperate regions such as Chile, Argentina, and Peru. However, the origins of the South American species are unknown, as are the relationships of these taxa to northern hemisphere Uroleucon species. This study seeks to establish the relationships between Uroleucon aphids native to South America and their North American and Eurasian counterparts using genetic data. We use phylogenetic analysis of cytochrome c oxidase …

Adaptation Of Influenza A Virus Strains A/Anhui/1/2013 (H7n9) And A/Shanghai/1/2013 (H7n9) For Development Of Effective Mouse Models, Spencer T. Mullen

Undergraduate Honors Capstone Projects

The emergence of avian Influenza A (H7N9) virus strains in humans poses a significant threat to human health globally due to their pandemic potential, limited human immunity, and lack of virus-specific interventions. This capstone aims to address some of the limitations in antiviral research regarding Influenza A H7N9 virus by adapting two low-pathogenic virus strains A/Anhui/1/2013 (H7N9) and A/Shanghai/1/2013 (H7N9) to BALB/c mice through sequential passaging through lung tissue. Following 12 serial passages, increased virulence was observed as evidenced by increased virus replication, increased weight loss, and increased mortality in infected mice. Titration of the initial non-adapted virus isolates were …

Investigation Of Immune/Performance Trade-Offs In Neonate Children's Pythons (Antaresia Childreni), Ellie Hartman

Undergraduate Honors Capstone Projects

Energetic costs and constraints are key considerations when analyzing an organism’s life history and may require trade-offs to be made between different life history traits. One of these trade-offs occurs between investment in immunity and performance. The purpose of this study is to discover if this trade-off influences behavior in neonate Children’s pythons (Antaresia childreni). We hypothesize that snakes undergoing an immune response will have reduced behaviors promoting survival. To test this hypothesis, neonate Children’s pythons were randomly assigned to receive an immune challenge of keyhole limpet hemocyanin (KLH) or a vehicle injection as a control. Two days …

Ethical Concerns And Implications Of Expanded Carrier Screening, Emily Andres

Undergraduate Honors Capstone Projects

The rapid evolution in the field of genetics is often met with uncertainty and skepticism. With the advancements in genetic technologies, expanded carrier screening (ECS) has emerged as a powerful tool in reproductive medicine. Traditionally, carrier screening was provided less broadly, often relying on ethnic-based approaches. However, further advancements have deemed this practice no longer equitable or widely accepted. While ECS provides prospective parents with insight into their genetic risk and may prevent severe genetic conditions, it also raises serious ethical questions for many. These concerns span medical, political, and societal facets including medicalization, defining severity, abortion, legislation, insurability, the …

Survey Of Insect Pests On Cut Flowers In Utah, Elliot Roberts

Undergraduate Honors Capstone Projects

Cut flower production is a relatively new industry in the state of Utah, gaining momentum by 2020. However, little research concerning management of the crops and their pests has been conducted. One issue producers face are insects that harm the plants in ways such as feeding damage and transmission of diseases. Currently, it is unknown which insects target different species of cut flowers in Utah. Morphological identification of genera and species is often difficult or impossible because of the small size of many of the insects and minute differences between species. This project uses PCR and DNA sequencing to identify …

Strategies For Increasing Methane Removal In Methanotroph Bench-Scale Systems For The Production Of Ectoine, Jaden Storrer

All Graduate Theses and Dissertations, Fall 2023 to Present

Anthropogenic methane emissions contribute to the greenhouse gas profile which is the chief cause of climate change. One significant source of methane emissions is biogas produced from bacteria in wastewater facilities and landfills. Methane rich biogas has the potential to be valorized into high value bioproducts by using methanotrophs (microbes that use methane as their primary carbon source). Methylotuvimicrobium alcaliphilum 20Z was selected for this study as it can generate ectoine when grown in highly saline environments. Ectoine has been proven to have many benefits such as it prevents protein denaturation, it has hydration properties, and is a UV protectant. …

Analyzing Microalgae-Bacteria Population Changes In Response To Environmental Parameters For Improved Wastewater Treatment, Amanda M. Moravek

All Graduate Theses and Dissertations, Fall 2023 to Present

Microalgae are incredible organisms that have a variety of uses such as wastewater treatment, fertilizer, livestock feed, and bio-compound production. Microalgae require a light source and minimal nutrients space to proliferate, making them an environmentally friendly and sustainable option for such processes. The Sustainable Wastes-to-Bioproducts Engineering Center at Utah State University is developing and implementing a Rotating Algae Biofilm Reactor (RABR) to remove total nitrogen and phosphorous from the Central Valley Wastewater Reclamation Facility wastewater effluent. Harmful compounds such as nitrates and phosphates are metabolized by the microalgae and converted into useful bioproducts, resulting in a circular economy. These RABRs …

Uv-A Light And Heat-Activated Antimicrobial And Biodegradable Materials For Food Packaging And Preservation, Michael J. Bodily

All Graduate Theses and Dissertations, Fall 2023 to Present

Current food packaging materials are often non-biodegradable and harmful for ingestion, which poses a threat to the environment and public health. Thus far, the dangers of microbial contamination of food on human health have outweighed the risks associated with using these conventional packaging plastics. A possible solution to these issues is to use a combination of innovative materials and microbial inactivation methods that can potentially both reduce plastic waste and combat harmful microorganisms. In this study, two antimicrobial, biodegradable composites were developed and tested for their ability to inactivate two types of bacterium, Escherichia coli K12 and Listeria innocua, …

Agrichemical Surfactant And Pathogen Impacts On The Blue Orchard Bee (Osmia Lignaria Say, Hymenoptera: Megachilidae), Mary-Kate F. Williams

All Graduate Theses and Dissertations, Fall 2023 to Present

Pathogens that infect commercially reared bee species, such as honey bees and bumble bees, have been extensively studied within the last several years, and studies that explore pathogen impacts on solitary bee health are significantly fewer. Consistent pesticide exposure methods are limited to honey bees and do not outline exposure routes to solitary bees, including how to test chemical impacts on immature stages. My research investigated blue orchard bee survival, development, and immune response following pathogen exposure while simultaneously studying organosilicone surfactant (OSS) exposure and possible synergisms between these two stressors. In my first research chapter (Chapter 2), I define …

Seasonal And Temporal Influences On Successful Crossing Rates By Ungulates Of A North Utah Wildlife Overpass, Blake Ledbetter

All Graduate Theses and Dissertations, Fall 2023 to Present

Encroachment of human infrastructure fragments wild landscapes and introduces a suite of negative impacts for humans and wildlife. In Utah, roadways threaten migratory ungulates by creating a barrier to movements and preventing access to seasonal migration routes. To mitigate these conflicts, state transportation agencies often install wildlife crossing structures to allow animals to safely cross over or under roadways. Selecting the proper crossing structure requires consideration of the species of interest, landscape, location, and structural dimensions. Often there is balance between the optimal location, the dimensions of the crossing structures, and what is feasible given the landscape. In 2018, the …

Impacts Of Reef Fish Length On Foraging Radius: Exploring Behavioral Patterns Within A Patch Reef Ecosystem, Kilia Brawand

Undergraduate Honors Capstone Projects

Reef fish exhibit various behaviors upon the Great Barrier Reef. One of these behaviors includes that of limiting their grazing distances from a patch reef refuge to a certain maximum distance in order to avoid predators. This is defined as a ‘foraging radius’ or ‘margin of safety’. This ‘foraging radius’ varies among fish due to many factors- including species, morphology, ontogenesis, habitat complexity, and importantly: speed. Quicker fish can outswim predators to safety more efficiently than slower fish, and can therefore afford to travel farther distances to forage. Speed varies among fish for a number of reasons, including fish size …

Plant Diversity Dynamics Over Space And Time In A Warming Arctic, Mariana García Criado, Isla H. Myers-Smith, Anne D. Bjorkman, Sarah C. Elmendorf, Signe Normand, Peter Aastrup, Rien Aerts, Juha M. Alatalo, Lander Baeten, Robert G. Björk, Mats P. Björkman, Noémie Boulanger‐Lapointe, Ethan E. Butler, Elisabeth J. Cooper, J. Hans C. Cornelissen, Gergana N. Daskalova, Belen Fadrique, Bruce C. Forbes, Greg H. R. Henry, Robert D. Hollister, Toke Thomas Høye, Ida Bomholt Dyrholm Jacobsen, Annika K. Jägerbrand, Ingibjörg S. Jónsdóttir, Elina Kaarlejärvi, Olga Khitun, Kari Klanderud, Tiina H. M. Kolari, Simone I. Lang, Nicolas Lecomte, Jonathan Lenoir, Petr Macek, Julie Messier, Anders Michelsen, Ulf Molau, Robert Muscarella, Marie-Louise Nielsen, Matteo Petit Bon, Eric Post, Katrine Raundrup, Riikka Rinnan, Christian Rixen, Ingvild Ryde, Josep M. Serra‐Diaz, Gabriela Schaepman‐Strub, Niels M. Schmidt, Franziska Schrodt, Sofie Sjögersten, Manuel J. Steinbauer, Lærke Stewart, Beate Strandberg, Anne Tolvanen, Craig E. Tweedie, Mark Vellend

Wildland Resources Faculty Publications

The Arctic is warming four times faster than the global average¹ and plant communities are responding through shifts in species abundance, composition and distribution^2,3,4. However, the direction and magnitude of local changes in plant diversity in the Arctic have not been quantified. Using a compilation of 42,234 records of 490 vascular plant species from 2,174 plots across the Arctic, here we quantified temporal changes in species richness and composition through repeat surveys between 1981 and 2022. We also identified the geographical, climatic and biotic drivers behind these changes. We found greater species richness …

Ethical Concerns And Implications Of Expanded Carrier Screening, Emily Andres

Student Research Symposium

The rapid evolution in the field of genetics is often met with uncertainty and skepticism. With the advancements in genetic technologies, expanded carrier screening (ECS) has emerged as a powerful tool in reproductive medicine. While ECS provides prospective parents with insight into their genetic risk, it also raises serious ethical questions for many.

Phylogeny And Historical Biogeography Of Uroleucon Aphids, Audrey Mullen

Student Research Symposium

Research Questions

• Are South American Uroleucon aphids endemic or recently introduced?

• If endemic, did the aphids come from North America or Eurasia?

• When did dispersal events occur?

• Did temperate zone-adapted Uroleucon aphids cross through equatorial tropical forest?

Investigation Of Immune/Performance Trade-Offs In Neonate Children's Pythons, Ellie Hartman

Student Research Symposium

Introduction

Energetic trade-offs are a key consideration when understanding an organism’s life history. One of these tradeoffs occurs between investment in immunity and performance.

• Individuals that invest more energy into immunity may be less equipped to avoid predation or find food, while those prioritizing performance may be more susceptible to infection
• Hypothesis: In response to a novel antigen, neonate snakes will have an immune response we can measure by counting immune cells. Additionally, we predict that strike frequency, swim speed, and endurance will be reduced in snakes undergoing an immune response and that with greater immune response we will see …

Evaluating The Stress System Of The Grieving Brain: Corticotropin-Releasing Factors And Partner Loss In Coyotes, Rachel Tong

Student Research Symposium

Introduction

Social bonds are fundamental and essential

• Positive and negative effects

The stress system¹ :

• Corticotropin-releasing factor (CRF) system
• CRFR1 and CRFR2
• Acts on the HPA axis, amygdala, and hippocampus

Genetic monogamy is common among coyotes

Importance:

• Coyotes’ greatest threat are humans
• An abandoned partner can disrupt biology and behavior

Animals experience social loss too!

Wiped Out?: Testing Peribacillus Frigoritolerans Against Hospital Disinfection Techniques, Alexis Lupus, Ashtyn Whatcott, Asaria Zizumbo, Cade Neuberger

Student Research Symposium

Introduction

Hospital disinfection is essential to patient health, as harmful bacteria can compromise patient health. Factors like pathogen type and cleaning frequency influence disinfection efficacy. Sani-Cloth® disinfectant wipes are widely used in healthcare settings and have shown high effectiveness, particularly on surfaces such as iPad screens. The Sani-Cloth® disinfectant wipes tested in this experiment protect against gram-negative and gram-positive bacteria .This experiment evaluates three types of Sani-Cloth® wipes against Peribacillus frigoritolerans, a gram-positive soil bacterium. Given the range of microbes introduced in hospital environments, especially in high-traffic areas like emergency departments, identifying the most effective wipes helps ensure optimal infection …

Optimizing Antibiotics: The Ph Factor, Tyler Barry, Camila Campos, Claire England, Carson Porter

Student Research Symposium

Antibiotic-resistant bacteria are a global concern. Antibiotic production depends on factors like pH and salinity. Antibiotics are waiting to be discovered in soil that can aid with health treatments [1]. We isolated colonies from soil. One isolate produced antibiotics, forming an inhibition zone against Staph. epidermidis. Our soil had a pH of 8, suggesting it's an alkaliphile that can thrive in basic conditions. Optimal pH enhances antibiotic production, benefiting medicine [3].

Implications Of Positive Nitrogen Fixation Capabilities Of Peribacillus, Weston Farley, Ariana Long

Student Research Symposium

Recent studies highlight the versatile role of Peribacillus simplex in sustainable agriculture. This bacterium has been shown to alleviate saline and alkaline stress in maize, promoting plant growth and improving crop yield under challenging conditions and enhance agricultural sustainability by supporting soil health and reducing the need for chemical fertilizers. Its role in fixing nitrogen and improving plant health makes it an essential player in eco- friendly farming practices.. Other species of Peribacillus have been shown to fix nitrogen, suggesting that our sample bacteria may also have these same capabilities.

• Our goal in this research is to determine whether …

Disjunction In Arachnospila (Pompilidae: Hymenoptera): Convergent Evolution Or Recent Dispersal?, Bridger Jorgensen, Steven Madsen

Student Research Symposium

Convergent evolution is defined as unrelated species evolving similar traits. A disjunct distribution is the appearance of species or groups of species in disconnected geographical areas. Is the disjunction we see in Arachnospila due to a recent disjunct distribution/long distance dispersal event or long-term convergent evolution?