Biology Commons^™

Growth Of Mc3t3-El Pre-Osteoblasts On Borate Containing Glasses & Growth Of Osteoblastic Cells On 13-93 Glass Scaffolds, Agatha Dwilewicz

Opportunities for Undergraduate Research Experience Program (OURE)

Three borate-based glasses, compositions designated 1B, 2B, and 3B, with B₂0₃ levels of 15, 31, and 46 mole percent (Table 1), respectively, were tested for their effects on the growth of MC3T3-El mouse pre-osteoblastic cells under physiological fluid conditions. Silicate type 45S5 glass was used as a control for comparison. Independently, the biocompatibility of recently developed silicate-based porous 13-93 bioactive glass scaffolds was tested; Saos-2 human osteosarcoma cell line was used. Tests performed for the two studies included: contact assays of cell growth at the glass interface, chemical analysis of borate released into the culture medium, quantitative …

Process Development For The Formation Of Post-Bonding Biorecognition Layers In Microfluidic Biosensors, Martin G. Perez, Phaninder R. Kanikella, James N. Reck, Chang-Soo Kim, Matthew O'Keefe

Electrical and Computer Engineering Faculty Research & Creative Works

Formation of the biorecognition layers within microfluidic sensor channels must be done after the completion of the channel structure since these layers cannot withstand the wafer bonding temperature. We propose a new post-bonding immobilization process to prepare the enzyme layers within microfluidic channels of electrochemical biosensors. An array of Pt vertical electrodes is electroplated using a SU-8 mold. The cured SU-8 is then removed by plasma etching to expose the Pt electrode and to define the fluidic channel cavity simultaneously. An array of enzyme posts is formed on the Pt surface by either electropolymerizing or photopolymerizing enzyme precursor solutions injected …

Antimicrobial Activities Of Aldehydes And Ketones Produced During Rapid Volatilization Of Biogenic Oils, Aruna Lamba

Masters Theses

"The overall objective of the research presented in this thesis was to evaluate the antimicrobial properties of commercially available neat compounds in order to validate the analytes which were found in the smoke generated during rapid volatilization of biogenic oil esters and mineral oils. To attain this objective various analytes were selected from the analytical data provided for the smoke, and neat compounds were purchased. A special desiccator was designed to conduct experiments. Simultaneously vapor phase concentration of the neat compounds was determined to establish relation between neat compounds and the analytes found in smoke. Other part of the thesis …

An Automated Method For Rapid Identification Of Putative Gene Family Members In Plants, Ronald L. Frank, Ajay Mane, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Gene duplication events have played a significant role in genome evolution, particularly in plants. Exhaustive searches for all members of a known gene family as well as the identification of new gene families has become increasingly important. Subfunctionalization via changes in regulatory sequences following duplication (adaptive selection) appears to be a common mechanism of evolution in plants and can be accompanied by purifying selection on the coding region. Such negative selection can be detected by a bias toward synonymous over nonsynonymous substitutions. However, the process of identifying this bias requires many steps usually employing several different software programs. We …

Comparative Sequence Analysis And Tissue Localization Of Members Of The Slc6 Family Of Transporters In Adult Drosophila Melanogaster, Matthew S. Thimgan, Jonathan S. Berg, Ann E. Stuart

Biological Sciences Faculty Research & Creative Works

The SLC6 family comprises proteins that move extracellular neurotransmitters, amino acids and osmolytes across the plasma membrane into the cytosol. In mammals, deletion of SLC6 family members has dramatic physiologic consequences, but in the model organism Drosophila melanogaster, little is known about this family of proteins. Therefore, in this study we carried out an initial analysis of 21 known or putative SLC6 family members from the Drosophila genome. Protein sequences from these genes segregated into either well-defined subfamilies, including the novel insect amino acid transporter subfamily, or into a group of weakly related sequences not affiliated with a recognized …

Diversity Of The Ig Repertoire Is Maintained With Age In Spite Of Reduced Germinal Centre Cells In Human Tonsil Lymphoid Tissue, G. R. Kolar, D. Mehta, P. C. Wilson, J. D. Capra

Biological Sciences Faculty Research & Creative Works

Humans and almost all species studied to date exhibit a decreased responsiveness to immunization and increased autoimmunity with age. While this has been observed clinically for decades, only recently has an understanding of the molecular basis for these changes begun to be appreciated. Studies of the B-cell aspects of these changes in ageing mice and the very few reports in ageing humans have not been conclusive. Here we examine the nucleotide sequence of over 1250 VH transcripts from the tonsils of individuals of various ages for changes to the VH4 immunoglobulin repertoire. An exhaustive examination of VH, DH and JH …

Microbial Growth And Biofilm Formation In Geologic Media Is Detected With Complex Conductivity Measurements, Caroline A. Davis, Estella A. Atekwana, Eliot A. Atekwana, Lee D. Slater, Silvia Rossbach, Melanie R. Mormile

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Complex conductivity measurements (0.1-1000 Hz) were obtained from biostimulated sand-packed columns to investigate the effect of microbial growth and biofilm formation on the electrical properties of porous media. Microbial growth was verified by direct microbial counts, pH measurements, and environmental scanning electron microscope imaging. Peaks in imaginary (interfacial) conductivity in the biostimulated columns were coincident with peaks in the microbial cell concentrations extracted from sands. However, the real conductivity component showed no discernible relationship to microbial cell concentration. We suggest that the observed dynamic changes in the imaginary conductivity (σ″) arise from the growth and attachment of microbial cells and …

Oxidase-Coupled Amperometric Glucose And Lactate Sensors With Integrated Electrochemical Actuation System, Jongwon Park, Chang-Soo Kim, Minsu Choi

Electrical and Computer Engineering Faculty Research & Creative Works

Unpredictable baseline drift and sensitivity degradation during continuous use are two of the most significant problems of biosensors including the amperometric glucose and lactate sensors. Therefore, the capability of on-demand in situ calibration/diagnosis of biochemical sensors is indispensable for reliable long-term monitoring with minimum attendance. Another limitation of oxidase enzyme-based biosensors is the dependence of enzyme activity on the background oxygen concentration in sample solution. In order to address these issues, the electrolytic generation of oxygen and hydrogen bubbles were utilized 1) to overcome the background oxygen dependence of glucose and lactate sensors and 2) to demonstrate the feasibility of …

Somato-Dendritic Morphology Predicts Physiology For Neurons That Contribute To Several Kinds Of Limb Movements, Ari Berkowitz, Gina L.C. Yosten, R. Mark Ballard

Biological Sciences Faculty Research & Creative Works

It has been difficult to predict the behavioral roles of vertebrate CNS neurons based solely on their morphologies, especially for the neurons that control limb movements in adults. We examined the morphologies of spinal interneurons involved in limb movement control, using intracellular recording followed by Neurobiotin injection in the in vivo adult turtle spinal cord preparation. We report here the first description of a class of spinal interneurons whose somato-dendritic morphologies predict their robust activity during multiple forms of ipsilateral and contralateral fictive hindlimb scratching and fictive hindlimb withdrawal. These "transverse interneurons" or T cells have mediolaterally elongated soma and …

2nd Annual Undergraduate Research Conference Abstract Book, University Of Missouri--Rolla

Undergraduate Research Conference at Missouri S&T

No abstract provided.

Automated Oxidase-Coupled Amperometric Microsensor With Integrated Electrochemical Actuation System For Continuous Sensing Of Saccharoids, Yadunandana Yellambalase, Jongwon Park, Chang-Soo Kim, Minsu Choi, Nohpill Park, Fabrizio Lombardi

Electrical and Computer Engineering Faculty Research & Creative Works

Recent developments for biosensors have been mainly focused on miniaturization and exploratory use of new materials. It should be emphasized that the absence of a novel "in-situ self-calibration/diagnosis technique" that is not connected to an external apparatus is a key obstacle to the realization of a biosensor for continuous use with minimum attendance. To address this deficiency, a novel needle-type biosensor system with fully automated operations is being developed, in which a novel oxidase-coupled amperometric sensor with oxygen depleting/generating actuator is interfaced with an electrochemical instrument and a perfusion system. Labview virtual instrument has been also developed to oversee the …

Disinfection Of Swine Wastewater Using Chlorine, Ultraviolet Light And Ozone, John J. Macauley, Zhimin Qiang, Rao Y. Surampalli, Melanie R. Mormile, Craig D. Adams

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Veterinary antibiotics are widely used at concentrated animal feeding operations (CAFOs) to prevent disease and promote growth of livestock. However, the majority of antibiotics are excreted from animals in urine, feces, and manure. Consequently, the lagoons used to store these wastes can act as reservoirs of antibiotics and antibiotic-resistant bacteria. There is currently no regulation or control of these systems to prevent the spread of these bacteria and their genes for antibiotic resistance into other environments. This study was conducted to determine the disinfection potential of chlorine, ultraviolet light and ozone against swine lagoon bacteria. Results indicate that a chlorine …

Design And Implementation Of A Storage Management Method For Content Distribution, Chang-Soo Kim, Yu-Hyeon Bak, Sang-Min Woo, Won-Jae Lee, Nunm-Ok Gee, Hag-Young Kim

Electrical and Computer Engineering Faculty Research & Creative Works

The SMART system is a special purpose server developed by ETRI and designed for efficient streaming services over high speed networks. The SMART server has one or more special purpose NS (Network-Storage) card. The NS card has several disks that store multimedia contents. However all of the multimedia contents to be serviced cannot be stored at the server. In this paper, we will describe the storage management mechanism in design and implementation aspects. With this storage management mechanism, the SMART server can provide effectiveness in managing storage and distributing some contents from a source station to streaming service servers.

Taxol-Stabilized Microtubules Can Position The Cytokinetic Furrow In Mammalian Cells, Katie Shannon, Julie C. Canman, C. Ben Moree, Jennifer S. Tirnauer, Edward D. Salmon

Biological Sciences Faculty Research & Creative Works

How microtubules act to position the plane of cell division during cytokinesis is a topic of much debate. Recently, we showed that a subpopulation of stable microtubules extends past chromosomes and interacts with the cell cortex at the site of furrowing, suggesting that these stabilized microtubules may stimulate contractility. To test the hypothesis that stable microtubules can position furrows, we used taxol to rapidly suppress microtubule dynamics during various stages of mitosis in PtK1 cells. Cells with stabilized prometaphase or metaphase microtubule arrays were able to initiate furrowing when induced into anaphase by inhibition of the spindle checkpoint. In these …

Evaluation Of Glycine Max Mrna Clusters, Ronald L. Frank, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolution, expression patterns, and alternatively spliced transcripts. Several methods have been developed to accomplish this, the most widely available being UniGene, a public domain collection of gene-oriented clusters for over 45 different species created and maintained by NCBI. The goal is for each cluster to represent a unique gene, but currently it is not known how closely the overall results represent that reality. UniGene's build procedure begins with initial mRNA clusters before joining ESTs. …

Glucose Oxidase (God)-Coupled Amperometric Microsensor With Integrated Electrochemical Actuation System, Jongwon Park, Chang-Soo Kim, Minsu Choi, Shanrui Zhang

Electrical and Computer Engineering Faculty Research & Creative Works

Recent developments for biosensors have been mainly focused on miniaturization and exploratory use of new materials. It should be emphasized that the absence of a novel "in-situ self-calibration/diagnosis technique" that is not connected to an external apparatus is a key obstacle to the realization of a biosensor for continuous use with minimum attendance. In order to address this issue, a novel solid-state glucose oxidase-coupled amperometric biosensor with integrated electrochemical actuation system has been designed and validated. There are two key components of the proposed glucose biosensor: solid-state GOD-coupled thin-lm amperometric sensing element and O₂ depleting/saturating built-in electrochemical actuator. The …

Bioactive Glass Coatings For Adherence To Bone Tissue, Wesley Trueblood

Opportunities for Undergraduate Research Experience Program (OURE)

The purpose of the experiments for this research project was to determine whether certain compositions of borate-based glasses are bioactive and can be used to bond titanium pins to bone. Two different major experiments were done. The first experiment was done to determine the bioactivity of the glass. The second experiment was done to simultaneously determine the bioactivity of the glass and determine whether or not the glass would bind to titanium and bone.

The majority of the research consisted of working with different compositions of borate-based glass, making glass pins, and coating titanium pins with the glass. The making …

Lead Tolerant Bacteria Could Be The Future Of Bioremediation, Kendra Waltermire

Opportunities for Undergraduate Research Experience Program (OURE)

The contamination of soil, sediment, and water by toxic metals is a major problem worldwide, both environmentally, and economically. Microorganisms that are resistant to lead are rare in nature. Lead is toxic to most microorganisms and only a few have developed mechanisms to survive in this toxic environment In this study, bacteria found in soil and water with high concentrations of soluble lead are isolated and characterized. I grew and isolated bacteria that are resistant to the lead found in the solid medium. A gram stain was used to characteristically determine the bacteria that were isolated. Four isolated bacteria were …

A General Recurrent Neural Network Approach To Model Genetic Regulatory Networks, Xiao Hu, Anne M. Maglia, Donald C. Wunsch

Biological Sciences Faculty Research & Creative Works

There is an urgent need for tools to unravel the complex interactions and functionalities of genes. As such, there has been much interest in reverse-engineering genetic regulatory networks from time series gene expression data. We use an artificial neural network to model the dynamics of complicated gene networks and to learn their parameters. The positive and negative regulations of genes are defined by a weight matrix, and different genes are allowed to have different decaying time constants. We demonstrate the effectiveness of the method by recreating the SOS DNA Repair network of Escherichia coli bacterium, previously discovered through experimental data.

Influence Of Oxygen Microenvironment On Microfluidic Glucose Sensor Performance, Chang-Soo Kim, Jongwon Park

Electrical and Computer Engineering Faculty Research & Creative Works

We propose a novel method to overcome significant problems of baseline drift and sensitivity degradation in amperometric biosensors based on oxidase enzyme reactions. A novel glucose microsensor with a built-in electrochemical oxygen manipulation microsystem is introduced to demonstrate three novel functionalities; one-point in situ self-calibration (zero-point), broadening of dynamic range and increase in sensitivity. The influence of electrochemically generated oxygen microenvironment on the sensor output within a fluidic structure is investigated.

Interactive Anatomy Online, Jennifer Leopold, Thomas Hoeft, Anne M. Maglia

Computer Science Faculty Research & Creative Works

The scientific community and general public can best take advantage of the benefits of 3D digital reconstructions if they are stored in a Web-accessible, easy-to-access database. We describe MorphologyNet/sup /spl copy// a Web-based digital library of realistic, 3D interactive and customizable images of anatomy currently in development at the University of Missouri-Rolla.

Effects Of Nitric Oxide Inhibitors And Scavengers On Gravitropism In Arabidopsis Thaliana, Kristin Russell, Jennifer Jacobi, Jacob Elmore

Opportunities for Undergraduate Research Experience Program (OURE)

No abstract provided.

An Efficient Method For Supporting Multiple Types Of Services On Smart Server, Chang-Soo Kim, Yu-Hyeon Bak, Seung-Joe Bae, Jin-Mee Kim, Sang-Min Woo, Seung-Hyup Jeon, Won-Jae Lee, Hag-Young Kim

Electrical and Computer Engineering Faculty Research & Creative Works

No abstract provided.

A New Microsensor System For Plant Root Zone Monitoring, Chang-Soo Kim, Sandeep Sathyan, D. M. Porterfield

Electrical and Computer Engineering Faculty Research & Creative Works

The objective of this work is to develop a new microsensor system that can monitor dissolved oxygen and hydration environment at the plant root zone. A miniaturized plant growth system is prepared including the root zone layer, either a porous ceramic tube or porous ceramic wafer on which the plant is grown, and an underlying fluidic channel to deliver nutrients and water to the root zone. We demonstrate the feasibility of using a flexible microsensor array for dissolved oxygen detection, and a four-electrode impedance microelectrode for wetness detection on the surface of a porous tube nutrient delivery system. The unique …

Human Fetal, Cord Blood, And Adult Lymphocyte Progenitors Have Similar Potential For Generating B Cells With A Diverse Immunoglobulin Repertoire, Grant R. Kolar, Takafumi Yokota, Maria Isabel D. Rossi, Swapan K. Nath, J. Donald Capra

Biological Sciences Faculty Research & Creative Works

Several characteristics of the immunoglobulin (Ig) repertoire in fetuses and adults set them apart from each other. Functionally, this translates into differences in the affinity and effectiveness of the humoral immune response between adults and the very young. At least 2 possibilities could explain these differences: (1) fetal and adult lymphocyte progenitors differ significantly in their potential to form a diverse repertoire, and (2) factors extrinsic to the immunoglobulin locus are more influential to the character of the repertoire. To address this, we used nonobese diabetic-severe combined immunodeficient- β2 microglobulin knockout (NOD/SCID/β2m ^-/-) mice reconstituted with human B-cell progenitors …

Immunoglobulin Heavy-Chain Receptor Editing Is Observed In The Nod/Scid Model Of Human B-Cell Development, G. R. Kolar, J. D. Capra

Biological Sciences Faculty Research & Creative Works

Receptor editing and receptor revision are the two mechanisms of antibody diversity that result in either complete V-gene replacement or the formation of hybrid V genes. We do not yet understand how this process unfolds, because they are rare and difficult to study in vivo. In this study, we describe a family of VH4-34:VH4-61 hybrids isolated from a human B-cell chimeric non-obese diabetic/severe combined immunodeficient mouse. The observation of hybrid immunoglobulin sequences in human B cells that developed in this model system makes it useful for the study of this mechanism of diversification and tolerance.

Immunoglobulin Heavy-Chain Receptor Editing Is Observed In The Nod/Scid Model Of Human B-Cell Development, G. R. Kolar, J. D. Capra

Biological Sciences Faculty Research & Creative Works

Receptor editing and receptor revision are the two mechanisms of antibody diversity that result in either complete V-gene replacement or the formation of hybrid V genes. We do not yet understand how this process unfolds, because they are rare and difficult to study in vivo. In this study, we describe a family of VH4-34:VH4-61 hybrids isolated from a human B-cell chimeric non-obese diabetic/severe combined immunodeficient mouse. The observation of hybrid immunoglobulin sequences in human B cells that developed in this model system makes it useful for the study of this mechanism of diversification and tolerance.

Nitric Oxide Is Involved In Growth Regulation And Re-Orientation Of Pollen Tubes, Ana Margarida Prado, D. M. Porterfield, José A. Feijó

Biological Sciences Faculty Research & Creative Works

Nitric oxide (NO) controls diverse functions in many cells and organs of animals. It is also produced in plants and has a variety of effects, but little is known about their underlying mechanisms. in the present study, we have discovered a role for NO in the regulation of pollen tube growth, a fast tip-growing cellular system. Pollen tubes must be precisely oriented inside the anatomically complex female ovary in order to deliver sperm. We hypothesized that NO could play a role in this guidance and tested this hypothesis by challenging the growth of pollen tubes with an external NO point …

Development Of A Tool To Facilitate Participation Of Maori In The Management Of Stream And River Health, Colin R. Townsend

Biological Sciences Faculty Research & Creative Works

A cultural health index (CHI) for streams was developed in a program of collaborative research involving members of Ngai Tahu (an iwi [tribe] within the South Island of New Zealand) and ecologists at Otago University. The aim was to provide a tool for effective participation of Maori in resource management decisions. Five cultural values are of central importance to the nature of the CHI: mauri (spiritual life force), mahinga kai (traditional resource harvesting), kaitiakitanga (guardianship obligation), ki uta ki tai (mountains-to-the-sea holistic philosophy), and wai taonga waters that are treasured). The CHI has three components. Forty-six stream sites in two …

Identifying Character Non-Independence In Phylogenetic Data Using Data Mining Techniques, Jennifer Leopold, Anne M. Maglia, M. Thakur, B. Patel, Fikret ErçAl

Computer Science Faculty Research & Creative Works

Undiscovered relationships in a data set may confound analyses, particularly those that assume data independence. Such problems occur when characters used for phylogenetic analyses are not independent of one another. A main assumption of phylogenetic inference methods such as maximum likelihood and parsimony is that each character serves as an independent hypothesis of evolution. When this assumption is violated, the resulting phylogeny may not reflect true evolutionary history. Therefore, it is imperative that character non-independence be identified prior to phylogenetic analyses. To identify dependencies between phylogenetic characters, we applied three data mining techniques: 1) Bayesian networks, 2) decision tree induction, …