Biology Commons^™

The Role Of Sirt7 In Beta Cell Function And Insulin Secretion, Trevor C. Kendrick, Jeffrey S. Tessem, Connor Littlefield

Library/Life Sciences Undergraduate Poster Competition 2024

Diabetes is a chronic metabolic disease characterized by an inability of beta cells to produce or secrete insulin due to decreasing beta cell mass, a condition induced by beta cell death or overuse. Current treatment consists of daily administration of insulin to diabetic individuals. We have shown that Sirtuin 7 (Sirt7), a deacetylase located in the nucleus, directly interacts with Nkx6.1, a transcription factor essential for beta cell function and proliferation. We have shown that one of the post translational modifications that impinges on Nkx6.1 activity is acetylation. Given Sirt7’s role as a deacetylase, and published reports demonstrating its impact …

Tardigrade Niche Partitioning, Samantha Hougaard, Byron Adams

Library/Life Sciences Undergraduate Poster Competition 2024

The two types of Tardigrade (also known as Tardigrade), Ramazzottius and Echiniscus, coexist in the same environment. It could be assumed that they partition their resources by food type to avoid competition. To test this theory, I limited the two tardigrade groups to one food source.

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Field-Based Selenium Partitioning Coefficients, Trophic Transfer Factors, And Otolith Time-Series Analyses For A Walleye Community From An Ecotonal Plains Reservoir, Colorado. Iii., Scott J. Herrmann, Del Wayne R. Nimmo, Lynn M. Herrmann-Hoesing, Igor V. Melnykov, Norman M. Halden

Western North American Naturalist

Little is known about partitioning coefficients, tissue bioaccumulation, trophic transfer, and otolith timeseries analyses of selenium (Se) in a fishery dominated by walleye (Sander vitreus) that consume multiple prey species and occur in a Se-rich reservoir. Concentrations of dissolved total Se in Pueblo Reservoir water consistently exceeded the current EPA criterion benchmark for lentic aquatic ecosystems. The major objectives of this study were to analyze Se in diet-borne consumables of a walleye fishery and perform time-series trend tests of 21 walleye sagittae. In contrast to previous reports, we proposed investigating Se partitioning from water to subsequent trophic levels …

Potentially Adaptive Significance Of Genome Size Diversity Across Ecological Gradients And Seed Size In Ivesia (Rosaceae), Israel T. Borokini, Shaun R. Broderick, Zhi Gao, Joshua M. Hallas, James A. Birchler, Mary M. Peacock

Western North American Naturalist

Variation in genome size across taxa has been explained using neutral and nonadaptive theories; however, genome size variation among taxonomic groups can also be shaped by natural selection if it correlates with functional traits. This study investigated the potential adaptive significance of genome size in Ivesia, a radiating genus distributed in the western North American desert ecosystems. We estimated the genome size of 34 taxa (including 31 Ivesia taxa, 2 Potentilla taxa, and 1 Horkelia taxon) using flow cytometric methods. For each taxon, leaf samples were collected from 6 individuals in 1 location each; intraspecific genome size variation was …

Effects Of Fire On Kangaroo Rats In The San Joaquin Desert Of California, David J. Germano, Lawrence R. Saslaw, Brian L. Cypher, Linda Spiegel

Western North American Naturalist

Fire can alter ecological communities, particularly those that are not fire-adapted, such as desert communities. We examined the effects of fire on rodent communities in the San Joaquin Desert of central California. Of particular interest were the effects on kangaroo rats (Dipodomys spp.) including 2 rare species, the giant kangaroo rat (D. ingens) and the short-nosed kangaroo rat (D. nitratoides brevinasus). Lightning caused multiple fires in arid scrub habitat in western Kern County in 1993. We trapped rodents at 7 sites along paired transects, with one transect in a burned area and one in a …

Aquatic Insect Communities Remain Impaired Following Large-Scale River Restoration, Jared Meek, Jackson Birrell, Teagan Mulford, Dennis K. Shiozawa, C. Riley Nelson

Western North American Naturalist

River manipulation and degradation can cause detrimental impacts on aquatic insect communities. River restoration projects seek to mitigate these human disturbances. Assessing the efficacy of river restoration remains an important goal for river managers and conservation biologists so that improved restoration methods can be used in the future. From 1999 to 2008, the Utah Reclamation Mitigation and Conservation Commission restored a 15-km channelized portion of the Provo River (Wasatch County, Utah, USA). Before (1999) and during (2002) the restoration project, macroinvertebrate samples were collected using modified kick nets from 3 sites within the restored area and 1 site outside the …

Insects Are Attracted To White Wind Turbine Bases: Evidence From Turbine Mimics, Madison S. Crawford, Delina E. Dority, Michael E. Dillon, Lusha M. Tronstad

Western North American Naturalist

Wind power is one of the fastest growing forms of renewable energy, but the interactions between wind turbines and insects are largely unknown beyond the observation that the accumulation of dead insects on turbine blades drastically reduces the power produced. Insects may be attracted to wind energy facilities because of topography, the heat that turbines produce, the lighting, or the visual cue of the turbine itself. Turbines can present a striking visual contrast relative to the surrounding landscape, particularly when they are painted bright white and reflect ultraviolet wavelengths. To test the hypothesis that wind turbine color attracts insects, we …

Western Pearlshell (Margaritifera Falcata) Extirpation In The Smith River, Montana, With A Possible Link To Warming Water Temperatures, David M. Stagliano

Western North American Naturalist

Western pearlshell (Margaritifera falcata) populations are in decline across the species’ range in western North America. In 2008, Montana categorized the western pearlshell as an imperiled species of concern (S2) based on reduced detections at historically occupied sites and few viable populations. Between 2004 and 2014, we surveyed 24 Smith River reaches (61 total sites in the watershed) for the presence of western pearlshell populations. Despite historical and anecdotal descriptions of abundant western pearlshell in the Smith River, intensive structured surveys between 2004 and 2007 documented only 4 sections with low-density, nonviable western pearlshell populations (<10 individuals, large size classes [average total length = 70 mm], with no signs of recruitment). In 2014, we revisited these occupied sites to repeat surveys (expending significantly more search time) and observed no live individuals. This was surprising given that, although those populations would certainly die out without recruitment, older individuals can oftentimes persist for decades. Therefore, we consider the western pearlshell mussel extirpated from the Smith River watershed. We reviewed long-term USGS gage discharge and temperature data near the western pearlshell populations to evaluate the potential causal factors for, and timing of, the extirpation. From 3 July to 3 August 2007, water temperatures were at or above the thermal stress levels of the western pearlshell (>25 °C, …

Plains To Peaks: An Analysis Of The Relationship Between Colorado Butterfly Communities And Altitude, Anna O. James, Kathryn Hokamp, Chris García-Hellmuth, Richard P. Reading

Western North American Naturalist

We compared butterfly communities of the Plains, Foothills, and Montane Zones of the Colorado Front Range and examined 3 groups of butterflies—blues (Polyommatinae species), fritillaries (Speyeria and Boloria spp.), and painted ladies (species Vanessa cardui)—for altitude shifts between 2014 and 2020. We conducted these analyses using data collected by volunteer butterfly monitors from the Colorado Butterfly Monitoring Network, a group organized and run by Butterfly Pavilion in Westminster, Colorado. Monitors walked designated routes and counted all butterflies they saw, identifying each to the lowest possible taxonomic group they could. We sorted routes into the 3 altitude zones, organized …

First Shasta Ground Sloth (Nothrotheriops; Xenarthra) From The Eastern Great Basin, Nevada, Jim I. Mead, Sandra L. Swift, H. Gregory Mcdonald, Steven D. Emslie

Western North American Naturalist

We present the first record of the Shasta ground sloth (Nothrotheriops shastensis) for the eastern Great Basin. The single right upper second molariform was recovered from the back dirt pile of archaeological test pits excavated during the 1960s and 1970s in Smith Creek Cave, northern Snake Range, White Pine County, Nevada. The precise age of the specimen is indeterminate, although all sediment layers in the area produced radiocarbon dates older than 11,000 cal BP; thus, the specimen is considered of the Rancholabrean Land Mammal Age. All previous accounts of this sloth in the Great Basin are from its …

Acarosporaceae Of New Mexico: Eight New Species Of Acarospora And Sarcogyne, Kerry Knudsen, Jana Kocourková, Eva Hodková, Jiří Malíček, Yan Wang

Western North American Naturalist

Eight new species are described from the Chihuahuan Desert in southern New Mexico: Acarospora agos­tiniana, A. divisa, A. fissurata, A. ryanii, Sarcogyne brouardiana, S. coeruleonigricans, S. malpaiensis, and S. nogalensis. Three species, Acarospora coloradiana, A. peltastica, and A. utahensis are not treated as synonyms of A. strigata, a South American endemic. Thirty-four species of Acarosporaceae are reported from the Chihuahuan Desert in southern New Mexico. Fifty-six species of Acarosporaceae are reported from New Mexico. It is estimated that 416 species of described Acarosporales occur worldwide, most in need of revisions. …

Copus Profiles Paper Data, Jamie Jensen, Rebecca L. Sansom, Jennifer B. Nielson, Richard E. West, Geoffrey Wright, Bryn St. Clair

ScholarsArchive Data

COPUS profile data, interview transcripts

Isolating Highly Specific Antibodies Against Cancer Target Hprt, Austin J. Hansen, Christopher J. Haynie, Kiara V. Whitley, Michelle Townsend, Abby Johnson, Hunter Lindsay, Laura Baird, Kim L. O'Neill

Library/Life Sciences Undergraduate Poster Competition 2023

Effective immunotherapeutic targeting of cancer cells requires identification of specific antigenic differences between cancerous and healthy cells. Hypoxanthine-guanine phosphoribosyltransferase (HPRT) is a cytoplasmic enzyme involved in the salvage pathway for DNA synthesis. Certain cancers (e.g., prostate and breast) upregulate and express HPRT on the cell membrane, making HPRT a potential cancer biomarker for cancer immunotherapies. Antibodies specific for unique cancer proteins are critical to develop targeted cancer immunotherapies. Using a yeast display library and cell sorting, we selected for high-affinity human single-chain (scFv) antibodies against HPRT that can be utilized in chimeric antigen receptor (CAR) T cell therapies and antibody-dependent …

Is There A Link Between Male Gonopodium Size And Mating Strategies Amongst Fish In The Family Poeciliidae?, Ryen Hunsaker, Jerald B. Johnson

Library/Life Sciences Undergraduate Poster Competition 2023

Have different male mating strategies led to evolutionary changes in male gonopodium size?

Natural selection should act strongly on any traits that affect successful reproduction. Fish species in the family Poeciliidae (livebearers) have a unique form of reproduction.

Do Regional Dna Barcode Databases Lead To More Efficient Specimen Identification?, Michael Kerr, Steven D. Leavitt

Library/Life Sciences Undergraduate Poster Competition 2023

DNA barcoding is a method for identifying specimens from specific regions of DNA. 1 Metabarcoding focuses on large, multi specimen scales. 2 These approaches rely on DNA databases for sequence identification, 2 but these databases often lack data from many species, 3 especially from poorly studied groups such as fungi 4 and lichens, which can lead to failure in specimen identification.

Sequencing The Guts Out Of Covid-19; The Evolution Behind The Covid-19 Pandemic, Madelyn Purnell

Undergraduate Honors Theses

The global COVID-19 pandemic has led to an urgent need for scalable methods for clinical diagnostics and tracking of virus variants. In this paper, we attempted a novel method of sequencing using Large Reverse Transcriptase-based cloning (LRTC). Although our methodology ended up not working due to high amount and fast degradation of RNA, we were able to sequence multiple variants of COVID-19 Positive samples from the BYU Student Health Center and 4 sewage samples to check for variant outbreaks in corresponding times. We were able to find several corresponding variants and track the progression of mutation in our local population.

The Ability To Classify Patients Based On Gene-Expression Data Varies By Algorithm And Performance Metric, Stephen Piccolo, Avery Mecham, Nathan P. Golightly, Jérémie L. Johnson, Dustin B. Miller

Faculty Publications

By classifying patients into subgroups, clinicians can provide more effective care than using a uniform approach for all patients. Such subgroups might include patients with a particular disease subtype, patients with a good (or poor) prognosis, or patients most (or least) likely to respond to a particular therapy. Transcriptomic measurements reflect the downstream effects of genomic and epigenomic variations. However, high-throughput technologies generate thousands of measurements per patient, and complex dependencies exist among genes, so it may be infeasible to classify patients using traditional statistical models. Machine-learning classification algorithms can help with this problem. However, hundreds of classification algorithms exist—and …

The Effects Of Curricular Change On Student Learning And Well-Being In Biomedical And Clinical Education, Rachel Jalaire Tomco Novak

Theses and Dissertations

The implementation of curriculum change, and innovative pedagogical theory, can help educators and administrators in higher education further the learning gains of students in the sciences. But the introduction of new methods of teaching, or curricular restructuring, can be interpreted by students differently, potentially affecting students' emotional states as well as their relationships with peers. To support not only the learning of students, but also their emotional and social well-being, pedagogical and curricular theory should be enacted in ways that take into consideration the full scope of the student experience. In this dissertation, the implementation of curriculum and pedagogical theory, …

Male And Female Victims Experience Different Types Of Sexual Assault, Carolyn Allen, Samuel Payne, Julie Valentine

Library/Life Sciences Undergraduate Poster Competition 2022

Intro:

• Sexual assault kits (SAKs) contain forensic evidence and are collected following an assault
• Most research on SAK processing has been done with combined male and female assaults
• 10% of victims are male
• There is lots of research on female victims, but very little research on male victims

In-Class Evolution Discussions Change Bible Interpretation, Jessica Abele

Library/Life Sciences Undergraduate Poster Competition 2022

Conflict between religion and evolution is a major barrier for religious biology students. Educators have been working to increase evolution acceptance by using a variety of methods (e.g., increasing evolution knowledge, addressing creationism in class, etc.) with little success. However, recent research shows using a reconciliatory approach to evolution and religion increases evolution acceptance while overall religiosity is unaffected (Lindsay et al., 2019).

Dietary And Energetic Trends Of The Invasive Asian Shore Crab, Tanner Reese, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

The Asian shore crab, Hemigrapsus sanguineus , is an invasive crab species that lives on the East Coast of the United States. It has become an important part of its invaded ecosystems and their energetic interactions. We studied this species’ energetics to better understand how they vary across season and latitude.

• The ratio of gut width to carapace width (“standardized gut size”) is indicative of long term diet quality in crabs (a larger gut corresponds to a lower average diet quality) (Griffen & Mosblack 2011)
• We measured standardized gut size and gut energy content to examine how this species’ diet …

Eeg As Successful Diagnostic Tool For Immune Effector Cell Associated Neurotoxicity Syndrome, Daniel Jones, Christine Eckhardt, Haoqi Sun, Ryan Tesh, Brandon Westover

Library/Life Sciences Undergraduate Poster Competition 2022

CAR T cell therapy was first proven effective in 2013¹ for the treatment of certain cancer s . However, its widespread adoption is still hindered by side effects like immune effector cell associated neurotoxicity syndrome (ICANS). Current research aims to better predict, diagnose, and treat ICANS so that CAR T cell therapy can be more widely applied. Although prior studies have attempted to identify an objective biomarker of ICANS² , current practice relies on clinical assessment to diagnose ICANS. We hypothesize that qualitative features of the EEG may be utilized to develop a physiological grading system of the …

Introducing Xanthoria Parietina: Invasive, Naturalized, Or Opportunistic?, Mikele Baugh, Steve Leavitt

Library/Life Sciences Undergraduate Poster Competition 2022

Lichens are one of the world’s ubiquitous group of organisms. They have been documented from frigid tundras to arid deserts. While some species are known to be particularly hardy and flexible in their habitats, many species are linked to specific growing conditions. As the global climate changes, the geographical range for different growing conditions shifts. Economic trade and human travel provide new opportunities for species to access new locations that are beginning to develop habitable conditions. Xanthoria parietina has been observed in the Great Basin (a region outside of its typical coastal distribution) found in newly built horticultural landscapes. Individuals …

The Mrna/Protein Relationship Is Fluid And Changes Across Tissue And Diseased States, Jose Humberto Giraldez Chavez, Sam Payne

Library/Life Sciences Undergraduate Poster Competition 2022

• Cancer is a dysregulated cell
• Molecular typing via DNA/RNA/protein
• Is RNA a proxy for cell?

Does Bathing After Sexual Assault Or Time Elapsed Have A Greater Effect On The Development Of Codis Eligible Dna Profiles?, Emily Black, Sam Payne, Julie Valentine, Leslie Miles

Library/Life Sciences Undergraduate Poster Competition 2022

Which has a greater effect on the development of CODIS eligible DNA profiles from SAKs – bathing/showering status of the victim or time between the assault and examination?

Comparison Of Tardigrade Extraction Methods, Abigail Andros

Library/Life Sciences Undergraduate Poster Competition 2022

It is a time-consuming process to pick tardigrades for an experiment. The standard method is to add water to the sample, then look through it and pick out tardigrades with a micropipette or small wire loop (Tsujimoto et al. 2015).

Whole-Body Vibration Alleviates Symptoms Of Morphine Withdrawal, Gavin C. Jones, Christina A. Small, Dallin Z. Otteson, Scott C. Steffensen

Library/Life Sciences Undergraduate Poster Competition 2022

Whole body vibration at 80 Hz has been shown to blunt neuropathological markers and behavioral symptoms of alcohol dependence Here, we evaluate its ability to ameliorate symptoms of morphine use and withdrawal.

Reviewing The Effects Of Human-Induced Limb Damage In Crabs, Jacob B. Spencer, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

Limb damage in crabs comes in various forms, each with unique consequences. Brachyuran crabs shed limbs as a defensive reflex, with natural breakage occurring along a plane, otherwise known as autotomy. In addition to autotomy, crabs commonly lose limbs due to fishing practices such as declawing. In many areas, taking the limbs and releasing the crab is a common practice. The logic is that the populations won’t decline if the crab is put back. Other practices such as nicking, or cutting the main claw tendon, are used to restrict claw movement. Various effects of these fishery practices have been documented …

Overcoming Detrimental Potato Fungi With The Secondary Metabolites Of Naturally Occurring Streptomyces In A Greenhouse, Hansan Jones, Jacob Anderson, Erik Kemp, Brad Geary, Matthew Madsen, Ryan Stewart

Library/Life Sciences Undergraduate Poster Competition 2022

• Fungal disease Silver scurf can cause 13% water loss and give poor aesthetic appeal, both of which reduce farmers profits (1,2).
• Pythium leak can result in up to 50% total loss of potatoes in storage (3).
• Streptomyces is the right candidate to mitigate or eliminate these losses because of its ability to survive in soil (4) and its history as a proven biocontrol for other plant pathogens (5).