Biology Commons^™

Evaluating The Impact Of Eastern Hemlock Decline On Louisiana Waterthrush Demographics And Behavior In Great Smoky Mountains National Park, Lee Cotten Bryant

Student Theses and Dissertations

Eastern hemlock (Tsuga canadensis) is declining throughout the eastern United States due to the invasive hemlock woolly adelgid (Adelges tsugae Annand). In the southern Appalachians, hemlock is concentrated in moist ravines and its loss threatens riparian specialists and habitat quality. The Louisiana waterthrush (Parkesia motacilla) is an obligate-riparian species that could be sensitive to hemlock condition in the southern Appalachians, but how hemlock decline might impact it is currently unknown. I addressed this knowledge gap by evaluating relationships between hemlock decline and waterthrushes. First, I evaluated the ultimate effects hemlock decline could have on waterthrushes, focusing on survival and habitat …

Threshold-Dependent Repression Of Spl Gene Expression By Mir156/Mir157 Controls Vegetative Phase Change In Arabidopsis Thaliana, Jia He, Mingli Xu, Matthew R. Willmann, Kevin Mccormick, Tieqiang Hu, Li Yang, Colby G. Starker, Daniel F. Voytas, Blake C. Meyers, R. Scott Poethig

Faculty Publications

Vegetative phase change is regulated by a decrease in the abundance of the miRNAs, miR156 and miR157, and the resulting increase in the expression of their targets, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) transcription factors. To determine how miR156/miR157 specify the quantitative and qualitative changes in leaf morphology that occur during vegetative phase change, we measured their abundance in successive leaves and characterized the phenotype of mutations in different MIR156 and MIR157 genes. miR156/miR157 decline rapidly between leaf 1&2 and leaf 3 and decrease more slowly after this point. The amount of miR156/miR157 in leaves 1&2 greatly exceeds the …

2018 2nd Place: Identifying The Effectiveness Of Plant Extracts For Treating Biofilms Of Escherichia Coli And Myxococcus Xanthus, Micah Burton, Akeisha Belgrave, Rachel Fogle

Harrisburg University Research Symposium (2018 & 2019)

Antibiotic resistance is a topic that is of growing concern in the field of medicine. Antibiotics act as growth blockers or act as toxins, killing the organism they affect. These biological weapons generate selective pressure leading to the current antibiotic crisis. This selective pressure causes resistant organisms to begin to emerge and over generations antibiotic resistance can develop and be spread among a bacterial population.

One of the key factors contributing to antibiotic resistance in bacteria is the ability for some bacteria to form and shield themselves within biofilms. Biofilms are masses of bacteria protected by a polysaccharide/ extracellular DNA …

The Plant Species Composition, Diversity And Natural Regeneration Of Indigenous Trees In The Disturbed Ruvu South Forest Reserve, Tanzania, Cosmas Mligo

Tanzania Journal of Science

Ruvu Forest Reserve is among coastal forests in Tanzania that has been impacted by the increased anthropogenic activities. It was determined the plant species composition, diversity and indigenous trees regeneration growth size structure in the degraded Ruvu South Forest. Transect method was used to collect data that were treated using t-test. A total of 110 plant species distributed among 38 families were recorded such that Holarrhena pubescens, Hymenocardia ulmoides, Millettia micans, Ochna mossambicensis, Pseudolachnostylis maprouneifolia and Strychnos madagascariensis were the most common trees in moderately disturbed site, whereas Albizia versicolor, Pteleopsis myrtifolia, Pterocarpus angolensis, Antiaris toxicaria, Diplorhynchus condylocarpon and Terminalia …

Gymnosperms On The Edge, Félix Forest, Justin Moat, Elisabeth Baloch, Neil A. Brummitt, Steve P. Bachman, Steffi Ickert-Bond, Peter M. Hollingsworth, Aaron Liston, Damon P. Little, Sarah Mathews, Hardeep Rai, Catarina Rydin, Dennis W. Stevenson, Philip Thomas, Sven Buerki

Biology Faculty Publications and Presentations

Driven by limited resources and a sense of urgency, the prioritization of species for conservation has been a persistent concern in conservation science. Gymnosperms (comprising ginkgo, conifers, cycads, and gnetophytes) are one of the most threatened groups of living organisms, with 40% of the species at high risk of extinction, about twice as many as the most recent estimates for all plants (i.e. 21.4%). This high proportion of species facing extinction highlights the urgent action required to secure their future through an objective prioritization approach. The Evolutionary Distinct and Globally Endangered (EDGE) method rapidly ranks species based on their evolutionary …

Bioaccumulation Of Zinc In Bermuda Grass (Cynodon Dactylon), Drew Fisher, H. Marie Surratt, Louise Gebauer, Andrew Palaski

Featured Research

Phytoremediation is the plant based process to remove toxins such as heavy metals from the soil. In this experiment, we hypothesized Bermuda grass (Cyndon dactylon) will absorb a detectable level of zinc, a nontoxic metal, from the soil. We grew two separate groups of grass: the control and the experimental, which was watered with zinc acetate. Neither of the groups produced enough yield within the weeks given to the experiment, but if it went according to plan, we would have used flame atomic absorption spectroscopy to evaluate the relative concentrations of zinc. Significant uptake of zinc could reveal a possible …

A Comparison Of Electron Transport Rate, Photosynthetically Active Radiation, Light-Adapted Fluorescence, And Dark-Adapted Fluorescence Between Stipa Pulchra And Pennisetium Setaceum, Sydney Adams, Brandon Chuck, Agatha Heng, Amelia Vento, Stephen D. Davis

Featured Research

The purpose of this investigation was to provide an explanation into how the invasive species Pennisetium setaceum, Fountain Grass, is able to outcompete the native California grassland species Stipa pulchra, Purple Needle Grass. We used a light adapted and a dark adapted fluorometer to measure the photosynthetic radiation (PAR), leaf temperature, alpha (α), light adapted fluorescence (Fv’/Fm’), dark adapted fluorescence (Fv/Fm), and the electron transport rate (ETR) on young Fountain Grass and Purple Needlegrass. After collecting and analyzing the data, we concluded that the dark adapted fluorescence (Fv/Fm) was the only statistically significant measurement where the Fv/Fm of S. pulchra …

The Effects Of Soil Suffused With Cool-Fire Ash On The Germination And Early Growth Of Radish Seedlings, Ryan Dalforno, Braden Ritchey, Jay Ogle

Featured Research

In this study, the effects of cool fire ash in soil with varying amounts of water were observed in terms of the germination and early growth of garden radish (Raphanus raphanistrum subsp. sativus) seedlings. Measurements regarding plant growth, field capacity, and seedling leaf quantum yield were taken and compared between four (4) trios of pots separately containing radish seedlings planted in ashy and frequently-watered soil (A_w), ashy and infrequently-watered soil (A_d), normal unmodified garden soil that was watered frequently (N_w) and normal soil that was watered infrequently (N_d). While the …

A Comparison Of Fluorescence And Etr Between Malosma Laurina And Rhus Integrifolia, Talia Danze, Jennifer Ipe, Viridiana Hernandez-Lopez, Stephen D. Davis, Talia Cao

Featured Research

Malosma laurina and Rhus integrifolia are both native species to the Santa Monica Mountains and belong to the same family, Anacardiaceae. The two natives have lived alongside each other but in recent years M. laurina has been heavily affected by the prolonged drought. The Malosma laurina population in the Santa Monica Mountains has withstood wildfires and droughts, and has remained relatively stable and healthy up until recently. A recent Pepperdine graduate published her findings explaining the high levels of dieback in Malosma laurina and attributed it to the fungus, B. dothidea. We hypothesized that Rhus integrifolia would have higher fluorescence …

A Comparison Of Electron Transport Rate, Photosynthetically Active Radiation, Light-Adapted Fluorescence, And Dark-Adapted Fluorescence Between Stipa Pulchra And Pennisetium Setaceum, Sydney Adams, Brandon Chuck, Agatha Heng, Amelia Vento, Stephen D. Davis

Featured Research

The purpose of this investigation was to provide an explanation into how the invasive species Pennisetium setaceum, Fountain Grass, is able to outcompete the native California grassland species Stipa pulchra, Purple Needle Grass. We used a light adapted and a dark adapted fluorometer to measure the photosynthetic radiation (PAR), leaf temperature, alpha (α), light adapted fluorescence (Fv’/Fm’), dark adapted fluorescence (Fv/Fm), and the electron transport rate (ETR) on young Fountain Grass and Purple Needlegrass. After collecting and analyzing the data, we concluded that the dark adapted fluorescence (Fv/Fm) was the only statistically significant measurement where the Fv/Fm of …

A Comparison Of Electron Transport Rate, Photosynthetically Active Radiation, Light-Adapted Fluorescence, And Dark-Adapted Fluorescence Between Stipa Pulchra And Pennisetium Setaceum, Sydney Adams, Brandon Chuck, Agatha Heng, Amelia Vento, Stephen D. Davis

Featured Research

The purpose of this investigation was to provide an explanation into how the invasive species Pennisetium setaceum, Fountain Grass, is able to outcompete the native California grassland species Stipa pulchra, Purple Needle Grass. We used a light adapted and a dark adapted fluorometer to measure the photosynthetic radiation (PAR), leaf temperature, alpha (α), light adapted fluorescence (Fv’/Fm’), dark adapted fluorescence (Fv/Fm), and the electron transport rate (ETR) on young Fountain Grass and Purple Needlegrass. After collecting and analyzing the data, we concluded that the dark adapted fluorescence (Fv/Fm) was the only statistically significant measurement where the Fv/Fm of S. pulchra …

A Comparison Of Electron Transport Rate, Photosynthetically Active Radiation, Light-Adapted Fluorescence, And Dark-Adapted Fluorescence Between Stipa Pulchra And Pennisetium Setaceum, Sydney Adams, Brandon Chuck, Agatha Heng, Amelia Vento, Stephen D. Davis

Featured Research

The purpose of this investigation was to provide an explanation into how the invasive species Pennisetium setaceum, Fountain Grass, is able to outcompete the native California grassland species Stipa pulchra, Purple Needle Grass. We used a light adapted and a dark adapted fluorometer to measure the photosynthetic radiation (PAR), leaf temperature, alpha (α), light adapted fluorescence (Fv’/Fm’), dark adapted fluorescence (Fv/Fm), and the electron transport rate (ETR) on young Fountain Grass and Purple Needlegrass. After collecting and analyzing the data, we concluded that the dark adapted fluorescence (Fv/Fm) was the only statistically significant measurement where the Fv/Fm of S. pulchra …

Evaluating Effects Of Gene Mutation And Light Intensity On Arabidopsis Thaliana Development, Carolanne Bekus

Student Scholar Showcase

The completion of sequencing Arabidopsis thaliana’s genome has led to the next crucial challenge of determining gene function in these plants. A. thaliana is a model organism often compared to commercial crops. The discovery of gene function within these plants will aid in giving insight on how gene function can affect commercial crop production. Presented here is an analysis comparing wild-type Columbia (Col-O), to single gene mutants when knocking-out transcriptional factors VPI/ABI3-like 1 (val1) and basic region/leucine zipper motif (bZIP). These single gene mutations may affect several traits that in turn can result in morphological changes and/or …

Restoration Of Native-Dominated Plant Communities On A Centaurea Stoebe L.-Infested Site, Neil W. Macdonald, Kaitlyn M. Dykstra, Laurelin M. Martin

Open Access Publishing Support Funded Articles

Questions: Restoring native-dominated plant communities often requires controlling invasive species, reintroducing native species, and implementing continued management practices. Can single herbicide applications to control Centaurea stoebe L. encourage establishment of seeded native species more effectively than a single mowing? Can annual hand pulling to control C. stoebe favor the persistence of seeded native species? Can mid-spring burning reduce C. stoebe and increase native forbs and grasses? After eight years, will the restored plant communities differ from those in untreated areas?

Location: Bass River Recreation Area, Ottawa County, MI, USA.

Methods: We studied the effects of site preparation (mowing, clopyralid, glyphosate), …

Plants, Society, And The Environment, Thomas Harnden, Katie Bridges

Biological Sciences Grants Collections

This Grants Collection for Plants, Society, and the Environment was created under a Round Six ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Proteasome Storage Granules Protect Proteasomes From Autophagic Degradation Upon Carbon Starvation, Richard S. Marshall, Richard D. Vierstra

Biology Faculty Research

26S proteasome abundance is tightly regulated at multiple levels, including the elimination of excess or inactive particles by autophagy. In yeast, this proteaphagy occurs upon nitrogen starvation but not carbon starvation, which instead stimulates the rapid sequestration of proteasomes into cytoplasmic puncta termed proteasome storage granules (PSGs). Here, we show that PSGs help protect proteasomes from autophagic degradation. Both the core protease and regulatory particle sub-complexes are sequestered separately into PSGs via pathways dependent on the accessory proteins Blm10 and Spg5, respectively. Modulating PSG formation, either by perturbing cellular energy status or pH, or by genetically eliminating factors required for …

Kelch F-Box Protein Positively Influences Arabidopsis Seed Germination By Targeting Phytochrome-Interacting Factor1, Manoj Majee, Santosh Kumar, Praveen Kumar Kathare, Shuiqin Wu, Derek Gingerich, Nihar R. Nayak, Louai Salaita, Randy Dinkins, Kathleen Martin, Michael Goodin, Lynnette M A Dirk, Taylor D. Lloyd, Ling Zhu, Joseph Chappell, Arthur G. Hunt, Richard D. Vierstra, Enamul Huq, A Bruce Downie

Biology Faculty Research

Seeds employ sensory systems that assess various environmental cues over time to maximize the successful transition from embryo to seedling. Here we show that the Arabidopsis F-BOX protein COLD TEMPERATURE-GERMINATING (CTG)-10, identified by activation tagging, is a positive regulator of this process. When overexpressed (OE), CTG10 hastens aspects of seed germination. CTG10 is expressed predominantly in the hypocotyl, and the protein is localized to the nucleus. CTG10 interacts with PHYTOCHROME-INTERACTING FACTOR 1 (PIF1) and helps regulate its abundance in planta. CTG10-OE accelerates the loss of PIF1 in light, increasing germination efficiency, while PIF1-OE lines fail to complete germination in …

Investigation Of Antimicrobial Properties Of Rhus Ovata Extracts, Sydney T. Adams

Seaver College Research And Scholarly Achievement Symposium

Native peoples of Southern California historically used a variety of local plants as remedies for illnesses. Chaparral species such as Rhus ovata (sugar bush) were widely available and were used to ease headaches, coughs and chest pains, and colds. In light of the historical importance of this plant and other chaparral species, recent fungal pathogen-induced diebacks of Malosma laurina, a species closely related to R. ovata, have raised questions regarding the innate defenses of these plants against fungal pathogens. We attempted to scientifically evaluate the traditional medicinal use of R. ovata and its antifungal resistance by testing two …

Potential Spread Of The Fungal Pathogen Botryospharea Dothidea From Chaparral Shrubs To Grape Vineyards In The Santa Monica Mountains, Alexandra N. Case, Natalie M. Aguirre, Rodney L. Honeycutt, Stephen D. Davis

Seaver College Research And Scholarly Achievement Symposium

We tested the hypothesis that an opportunistic endophytic fungus, Botryosphaeria dothidea, that frequently infects and causes dieback in species of chaparral shrubs in the Santa Monica Mountains during drought events, may spread to grape vineyards in the Santa Monica Mountains. Recently a dominant chaparral species in coastal exposures of the Santa Monica Mountains, Malosma laurina, has undergone extensive dieback in low elevation, dry sites, in response to historic drought in California, but less dieback in high elevation moist sites. M. laurina frequently grows adjacent grape vineyards. Thus we hypothesized that fungal isolates from a low elevation, dry vineyard …

Effect Of Microbes On The Growth And Physiology Of The Dioecious Moss, Ceratodon Purpureus, Caitlin Ann Maraist

Dissertations and Theses

The microorganisms colonizing plants can have a significant effect on host phenotype, mediating such processes as pathogen resistance, stress tolerance, nutrient acquisition, growth, and reproduction. Research regarding plant-microbe interactions has focused almost exclusively on vascular plants, and we know comparatively little about how bryophytes -- including mosses, liverworts, and hornworts -- are influenced by their microbiomes. Ceratodon purpureus is a dioecious, cosmopolitan moss species that exhibits sex-specific fungal communities, yet we do not know whether these microbes have a differential effect on the growth and physiology of male and female genotypes. Using a common-garden design, we reared ten axenic genotypes …

Long-Term Irrigation Affects The Dynamics And Activity Of The Wheat Rhizosphere Microbiome, Dmitri V. Mavrodi, Olga Mavrodi, Liam D.H. Elbourne, Sasha Tetu, Robert F. Bonsall, James Parejko, Mingming Yang, Ian T. Paulsen, David M. Weller, Linda S. Thomashow

Faculty Publications

The Inland Pacific Northwest (IPNW) encompasses 1. 6 million cropland hectares and is a major wheat-producing area in the western United States. The climate throughout the region is semi-arid, making the availability of water a significant challenge for IPNW agriculture. Much attention has been given to uncovering the effects of water stress on the physiology of wheat and the dynamics of its soilborne diseases. In contrast, the impact of soil moisture on the establishment and activity of microbial communities in the rhizosphere of dryland wheat remains poorly understood. We addressed this gap by conducting a three-year field study involving wheat …

Testing For The Presence Of Botryosphaeria Dothidea In Branches Of Ceanothus Spinosus Undergoing Dieback, Brandon R. Grinovich, Chelsea N. Puncochar, Katarina L. Carter, Stephen D. Davis, Rodney L. Honeycutt, Talia A. Cao, Karagan L. Smith

Featured Research

Botryosphaeria dothidea is an opportunistic pathogen found in some of the cavitated branches of the vegetation in the Santa Monica Mountains. In this study, we focused on finding the presence of Botryosphaeria dothidea in Ceanothus spinosus located on Pepperdine University’s campus. We wanted to test this hypothesis because we observed a large amount of dieback in the Ceanothus spinosus population and wanted to identify a possible contributor. Because of the large number of cavitated branches the Ceanothus spinosus contained, we hypothesized they contained fungus. To test this, we took twenty samples of twenty different Ceanothus spinosus, isolated the fungus …

Genetic Diversity And Distinctness Of Wild Nebraska Hops And Hop Cultivars (Humulus Lupulus L.), Megan Franklin

Honors Program: Senior Projects (Public)

Background Commercial hop (Humulus lupulus) cultivars that are being grown in the Midwest are not performing as successfully as when they are grown in the Pacific Northwest, the region to which they are adapted. To increase adaptation to the Midwest environment, one strategy is to draw from the genetic pool of wild native Midwest hops, which have developed genes that allow them to grow successfully in this environment. Wild hop plants that are genetically distinct from commercial cultivars are likely to have more adaptations, such as pest/disease resistance and drought tolerance, which can be bred into commercial lines. The …

Effects Of Predispersal Insect Seed Predation On The Early Life History Stages Of A Rare Cold Sand-Desert Legume, Yi J. Han, Jerry M. Baskin, Dun Y. Tan, Carol C. Baskin, Ming Y. Wu

Biology Faculty Publications

Seed predation by insects is common in seeds of Fabaceae (legume) species with physical dormancy (PY). However, the consequences of insect seed predation on the life history of legumes with PY have been little studied. In the largest genus of seed plants, Astragalus (Fabaceae), only one study has tested the effects of insect predation on germination, and none has tested it directly on seedling survival. Thus, we tested the effects of insect predation on seed germination and seedling growth and survival of Astragalus lehmannianus, a central Asian sand-desert endemic. Under laboratory conditions, seeds lightly predated in the natural habitat …

Impact Of Mid-Season Sulphur Deficiency On Wheat Nitrogen Metabolism And Biosynthesis Of Grain Protein, Zitong Yu, Angela Juhasz, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma

Grain and Other Field Crops Research Articles

Wheat (Triticum aestivum) quality is mainly determined by grain storage protein compositions. Sulphur availability is essential for the biosynthesis of the main wheat storage proteins. In this study, the impact of different sulphur fertilizer regimes on a range of agronomically important traits and associated gene networks was studied. High-performance liquid chromatography was used to analyse the protein compositions of grains grown under four different sulphur treatments. Results revealed that sulphur supplementation had a significant effect on grain yield, harvest index, and storage protein compositions. Consequently, two comparative sulphur fertilizer treatments (0 and 30 kg ha−1 sulphur, with 50 …

Anti-Proliferative Effects Of Garcinia Fruits In Breast Cancer Cells, Harini Anandhi Senthilkumar

Dissertations, Theses, and Capstone Projects

Breast cancer continues to be the second leading cause of death in women, even with the recent advances in research that has led to an improved understanding of molecular pathways and targets. Increasing mortality due to recurrence and lack of targeted drugs, especially in aggressive breast cancer subtypes such as triple negative breast cancer, has gained attention from the research community. With nearly 50% of the commonly used cancer drugs being sourced from plants, bioactive small molecules derived from a natural origin have immense potential as therapeutics. This study focuses on the anti-proliferative activities of benzophenones isolated from the edible …

Lethal Effects Of Leaf Leachate From The Non-Native Invasive Shrub Amur Honeysuckle (Lonicera Maackii) On A Model Aquatic Organism (Hyalella Azteca), Eric B. Borth, Kevin W. Custer, Ryan W. Mcewan

Biology Faculty Publications

The invasive shrub Lonicera maackii (Amur honeysuckle) is a problematic species in the eastern United States and there is growing evidence that materials from this species have toxic effects on some organisms. We used a sequence of microcosm bioassays to assess the influence of L. maackii leaf leachate on the macroinvertebrate Hyalella azteca, which is a standard aquatic organism for toxicity assessment. In a laboratory setting, H. azteca were exposed to a leaf leachate dilution series (6.25%, 12.5%, 25%, 50%, 100%) in 48-h toxicity tests. This was repeated throughout the growing season to assess the potential for changes in …

Distribution Of A. Modesta, A. Julibrissin And M. Himalayana Gamble In Pir Lasura National Park, Sher Wali Khan, Nafeesa Qudsia Hanif, Madeeha Manzoor

Journal of Bioresource Management

Pir Lasura National Park (PLNP) in Azad Jammu and Kashmir, Pakistan is located in the Kotli Forest division and spans across an area of 13,900 acres. The list obtained through this study included 46 tree species of angiosperms, out of which only 3 species belong to the family Mimosaceae; A. modesta, A. julibrissin and M. himalayana gamble. A. modesta had 1.6 % constancy and belonged to class Ⅰ, A. julibrissin had 3.3% relative cover and belonged to class Ⅰ, whereas the relative vegetative cover of Mimosa himalayana gamble was too less to be tabulated. All the three species of the …

Repeated Translocation Of A Gene Cassette Drives Sex-Chromosome Turnover In Strawberries, Jacob A. Tennessen, Na Wei, Shannon C.K. Straub, Rajanikanth Govindarajulu, Aaron Liston, Tia-Lynn Ashman

Faculty & Staff Scholarship

Turnovers of sex-determining systems represent important diversifying forces across eukary- otes. Shifts in sex chromosomes—but conservation of the master sex-determining genes— characterize distantly related animal lineages. Yet in plants, in which separate sexes have evolved repeatedly and sex chromosomes are typically homomorphic, we do not know whether such translocations drive sex-chromosome turnovers within closely related taxo- nomic groups. This phenomenon can only be demonstrated by identifying sex-associated nucleotide sequences, still largely unknown in plants. The wild North American octoploid strawberries (Fragaria) exhibit separate sexes (dioecy) with homomorphic, female heteroga- metic (ZW) inheritance, yet sex maps to three different chromosomes in …

Pleiotropic And Epistatic Network-Based Discovery: Integrated Networks For Target Gene Discovery, Deborah Weighill, Piet Jones, Manesh Shah, Priya Ranjan, Wellington Muchero, Jeremy Schmutz, Avinash Sreedasyam, David Macaya-Sanz, Robert Sykes, Nan Zhao, Madhavi Z. Martin, Stephen Difazio, Timothy J. Tschaplinski, Gerald Tuskan, Daniel Jacobson

Faculty & Staff Scholarship

Biological organisms are complex systems that are composed of functional networks of interacting molecules and macro-molecules. Complex phenotypes are the result of orchestrated, hierarchical, heterogeneous collections of expressed genomic variants. However, the effects of these variants are the result of historic selective pressure and current environmental and epigenetic signals, and, as such, their co-occurrence can be seen as genome-wide correlations in a number of different manners. Biomass recalcitrance (i.e., the resistance of plants to degradation or deconstruction, which ultimately enables access to a plant’s sugars) is a complex polygenic phenotype of high importance to biofuels initiatives. This study makes use …