Biology Commons^™

Diversity, Function And Regulation Of Cell Surface And Intracellular Immune Receptors In Solanaceae, Jong Hum Kim, Christian Castroverde

Biology Faculty Publications

The first layer of the plant immune system comprises plasma membrane-localized receptor proteins and intracellular receptors of the nucleotide-binding leucine-rich repeat protein superfamily. Together, these immune receptors act as a network of surveillance machines in recognizing extracellular and intracellular pathogen invasion-derived molecules, ranging from conserved structural epitopes to virulence-promoting effectors. Successful pathogen recognition leads to physiological and molecular changes in the host plants, which are critical for counteracting and defending against biotic attack. A breadth of significant insights and conceptual advances have been derived from decades of research in various model plant species regarding the structural complexity, functional diversity and …

Cascading Effects Of Polyphenol-Rich Purple Corn Pericarp Extract On Pupal, Adult, And Offspring Of Tobacco Hornworm (Manduca Sexta L.), Mandeep Tayal, Pavel Somavat, Isabella Rodriguez, Leilani Martinez, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A major bottleneck in the commercialization of plant-based pest management compounds is that the extraction methods are complex, time-consuming, and even highly expensive. Using a recently developed inexpensive extraction and quantification methodology to isolate polyphenols (including anthocyanins and condensed tannins) from purple corn pericarp, we examined their effects on Manduca sexta, a common insect herbivore. Following up on our previous work which demonstrated the negative impacts of polyphenol-rich extract on larval stages, we further examined whether there are any cascading effects on subsequent life stages (pupal and adult) including any possible transgenerational effects. Our results show that polyphenol-rich purple corn …

Spore Germination For Three Edible Zimbabwean Mushrooms Using Biostimulants, Melody Pamire, Wilson Parawira

Tanzania Journal of Science

Spores play critical roles in the population and community development of ectomycorrhizal fungi (EMF), which grow naturally in the presence of host plants. EMFs have not been cultivated commercially in most countries including those in Africa. In vitro germination of their spores is refractory and has been witnessed only in the presence of stimulants. In this study, germination of spores for three wild ectomycorrhizal fungi commonly collected in Zimbabwe was investigated under the influence of three biostimulants in Murashige and Skoog (MS) and Potato Dextrose Agar (PDA) media for the first time. The stimulatory capacity of tomato or potato roots …

De Novo Sequencing And Analysis Of Salvia Hispanica Tissue-Specific Transcriptome And Identification Of Genes Involved In Terpenoid Biosynthesis, James Wimberley, Joseph Cahill, Hagop S. Atamian

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Salvia hispanica (commonly known as chia) is gaining popularity worldwide as a healthy food supplement due to its low saturated fatty acid and high polyunsaturated fatty acid content, in addition to being rich in protein, fiber, and antioxidants. Chia leaves contain plethora of secondary metabolites with medicinal properties. In this study, we sequenced chia leaf and root transcriptomes using the Illumina platform. The short reads were assembled into contigs using the Trinity software and annotated against the Uniprot database. The reads were de novo assembled into 103,367 contigs, which represented 92.8% transcriptome completeness and a diverse set of Gene Ontology …

Seed Size And Germination, Meredith Cobb, Michaela J. Woods, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

This dataset encompasses information related to predictors of seed germination from the species Carya laciniosa, Juglans cinerea, and Quercus rubra. Seed sizes were recorded prior to incubation in sand, vermiculite, or without media. Seeds were then germinated with time to germination recorded in this dataset.

Tropical Pitcher Plants (Nepenthes) Act As Ecological Filters By Altering Properties Of Their Fluid Microenvironments, Kadeem J. Gilbert, Leonora S. Bittleston, Wenfei Tong, Naomi E. Pierce

Biology Faculty Publications and Presentations

Characteristics of host species can alter how other, interacting species assemble into communities by acting as ecological filters. Pitchers of tropical pitcher plants (Nepenthes) host diverse communities of aquatic arthropods and microbes in nature. This plant genus exhibits considerable interspecific diversity in morphology and physiology; for example, different species can actively control the pH of their pitcher fluids and some species produce viscoelastic fluids. Our study investigated the extent to which Nepenthes species differentially regulate pitcher fluid traits under common garden conditions, and the effects that these trait differences had on their associated communities. Sixteen species of Nepenthes …

The Effects Of Trichloroethylene On The Germination And Early Development Of Radish, Butternut Squash, Corn, And Soybean, Sarah Jaksich

UNO Student Research and Creative Activity Fair

Trichloroethylene (TCE) is a small molecule used as a metal degreaser and as an extraction solvent for lipids. Historically, TCE has been used to clean missiles and rockets after testing at military sites. However, TCE has decreased in use due to its potential health hazards. TCE is particularly dangerous because it is soluble in water and easily seeps into ground water. As a result, TCE has contaminated groundwater in Mead, Nebraska. The town is near the formal Nebraska Ordnance Plant, a military factory specializing in bomb assembly, ammonium nitrate production, and explosives burning. Soil sampling in Mead indicated TCE levels …

Influence Of Cattle Grazing On Milkweed And Other Native Forbs, Karen Klug

UNO Student Research and Creative Activity Fair

One of the most identifiable plants of the Great Plains are milkweed species (Asclepias spp.), which are also the only food source for monarch butterfly caterpillars (Danaus plexippus). Conservation of the milkweed population has taken renewed importance as the population of eastern migratory monarchs has dropped by over 80% from 1996 to 2017, largely because of a loss of over 1.3 billion stems of milkweed. As a result of this monarch population decline, it has been petitioned to protect the monarch butterfly population under the US Endangered Species Act. To increase the population size of the …

Impact Of The Urban Heat Mosaic On The Leaf Senescence In Two Acer Species, Jeffrey D. Smith

University Honors Theses

Due to the heterogeneity of the urban heat island, we can think of the variable influence of urbanization on air temperature as more of an urban heat mosaic. Climate change has caused a resurgence of interest in the way temperature affects how organisms, such as street trees, undergo cyclic changes in their life cycle. Such changes include budburst or, less commonly, timing of senescence. Little is known about how the urban heat mosaic could be affecting the phenology of different urban trees. Because street trees are one of the more prominent ecosystem engineers of the urban landscape, variable influences of …

Life Line March 2020, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

The Department Welcomes Dr. Sinn; Modeling to Help with Global Research; The Paradise of Bombs Revisited; The End of an Era in Conesville Ohio; Reports from two recipients of the Melinda Phinney Award for Pre-Med Travel Experiences; Preparing Skins for Study; Genomics in the Jungle; Zoo Program Gets New T -Shirt and Sweatshirt Designs; Aquarium Track Dives Right In; Dr. Svitana’s Sabbatical Accomplishments;Biology Behind Bars; Grossology: The Science of Icky, Sticky, Disgusting Things.

Strain Improvement Of Pleurotus Giganteus (Berk.) Karunarathna & K. D. Hyde Via Conventional Mating Techniques, Kwan Yun Ha

Student Works (2020-2029)

Recently, a commercial strain of Pleurotus giganteus (Berk.) Karunarathna & K.D. Hyde from China has been cultivated in Malaysia. Pleurotus giganteus was prone to insect infestation which led to heavy losses for farmers. The aim of this study was to generate new hybrids of P. giganteus that maybe resistant to pest and contamination. The commercial strain of P. giganteus from China (KLU-M 1227) and a wild strain from Malaysia (KLU-M 1391) were subjected to intraspecific breeding. Of the 56 combinations, 16 hybrids were obtained. All the 16 hybrids together with the parents were subjected to radial and linear growth study. …

Annonex2embl: Automatic Preparation Of Annotated Dna Sequences For Bulk Submissions To Ena, Michael Gruenstaeudl

Biological Sciences Faculty Publications

The submission of annotated sequence data to public sequence databases constitutes a central pillar in biological research. The surge of novel DNA sequences awaiting database submission due to the application of next-generation sequencing has increased the need for software tools that facilitate bulk submissions. This need has yet to be met with the concurrent development of tools to automate the preparatory work preceding such submissions.The author introduce annonex2embl, a Python package that automates the preparation of complete sequence flatfiles for large-scale sequence submissions to the European Nucleotide Archive. The tool enables the conversion of DNA sequence alignments that are co-supplied …

A Rubric For Grading Laboratory Research Paper Writing Assignments In Plant Biology, David Rhoads

Q2S Enhancing Pedagogy

Writing a research paper based on a course laboratory research project is challenging for many students. In addition to providing a 3 page summary on how to write the paper (with details on the type and format of the content to be included for each section), I provide a detailed grading rubric that also contains an outline of the topics to be included in the paper. This rubric was further refined in the Winter 2020 (Q2S) Writing Intensive Faculty Learning Community (WI FLC).

The Influences Of Green Infrastructure On Levels Of Somatic And Male-Specific Coliphages At Shadyside Park, Oula Salih

Student Papers and Reports

Microbial contamination is still considered one of the major causes of diminished function and quality of urban rivers and streams in Michigan. Floodplains, a type of green infrastructure used to reduce flooding after large amounts of rainfall, were reported to have variable effects of reducing levels of stormwater runoff within these bodies of water ( Hubbart et al., 2011 ). Viral indicators of fecal contamination in bodies of water include male-specific and somatic coliphages. Water samples from Plaster Creek were collected before and after the floodplain in order to identify the levels of somatic and male-specific coliphages during dry and …

Seed Source Regions Drive Fitness Differences In Invasive Macrophytes, Morgane B. Gillard, Rebecca E. Drenovsky, Gabrielle Thiébaut, Michèle Tarayre, Caryn J. Futrell, Brenda J. Grewell

2020 Faculty Bibliography

Premise Worldwide, ecosystems are threatened by global changes, including biological invasions. Invasive species arriving in novel environments experience new climatic conditions that can affect their successful establishment. Determining the response of functional traits and fitness components of invasive populations from contrasting environments can provide a useful framework to assess species responses to climate change and the variability of these responses among source populations. Much research on macrophytes has focused on establishment from clonal fragments; however, colonization from sexual propagules has rarely been studied. Our objective was to compare trait responses of plants generated from sexual propagules sourced from three climatic …

Pacvr: Plastome Assembly Coverage Visualization In R, Michael Gruenstaeudl, Nils Jenke

Biological Sciences Faculty Publications

Plastid genomes typically display a circular, quadripartite structure with two inverted repeat regions, which challenges automatic assembly procedures. The correct assembly of plastid genomes is a prerequisite for the validity of subsequent analyses on genome structure and evolution. The average coverage depth of a genome assembly is often used as an indicator of assembly quality. Visualizing coverage depth across a draft genome is a critical step, which allows users to inspect the quality of the assembly and, where applicable, identify regions of reduced assembly confidence. Despite the interplay between genome structure and assembly quality, no contemporary, user-friendly software tool can …

Bioproduction Of Molecules For Structural 3d Printing Filaments, Bailey M Hume, Mark P. Running, Jesse Rozsa, Hyun Jin Jung

Undergraduate Arts and Research Showcase

In our laboratory, we are focused on the study of plant cells and their use in daily, real-world applications. Our main goal is to produce organic, conductive, and biodegradable material to be used by KAMPERS collaborators. Physcomitrella patens is the model organism we have used. We have created a ggb knockout mutant line of P. patens which is long lasting (immortal) and advantageous over wild-type strains for use in bioreactors. Our laboratory has identified several different metabolic pathways that have potential uses in creating conductive material for use in 3D printing. These pathways are the polyisoprene pathway, the polyacetylene pathway, …

Lithological Constraints On Resource Economies Shape The Mycorrhizal Composition Of A Bornean Rain Forest, Monique Weemstra, Kabir G. Peay, Stuart J. Davies, Mohizah Mohamad, Akira Itoh, Sylvester Tan, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

• Arbuscular mycorrhizal fungi (AMF) and ectomycorrhizal fungi (EMF) produce contrasting plant–soil feedbacks, but how these feedbacks are constrained by lithology is poorly understood.

• We investigated the hypothesis that lithological drivers of soil fertility filter plant resource economic strategies in ways that influence the relative fitness of trees with AMF or EMF symbioses in a Bornean rain forest containing species with both mycorrhizal strategies.

• Using forest inventory data on 1245 tree species, we found that although AMF-hosting trees had greater relative dominance on all soil types, with declining lithological soil fertility EMF-hosting trees became more dominant. Data on …

Investigating Links Between Soil Microbial Structure And Function In Three Major Plant Communities Across Temporal Scales Of Arctic Alaska, Kaj Lynoe

Electronic Theses and Dissertations

Arctic microbial systems continue to get attention today as our understanding regarding their structure and function in a changing system is paramount to C feedbacks with warming and changes in precipitation. Plant communities and microbial community processes across the Arctic landscape are central to understanding tundra ecosystem processes because environmental conditions and plant community structure drive microbial cycling of soil organic matter. Here, we want to understand how soil microbial respiration, mineralization, biomass, and community composition are linked to three Alaskan tundra plant communities, namely Shrub, Tussock, and Sedge tundra and the seasonal variability in this system. A total of …

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Comparison Of The Effects Of Growing-Season Burns And Dormant-Season Burns On Vegetation Structure And Grassland Bird Diversity In East-Central Illinois Prairies, Joseph Lee Boise

Masters Theses

For managed grasslands, prescribed burns are a method to manage species composition by preventing crowding by bunch grasses and woody encroachment. While dormant-season (spring) burns are routinely performed, managers have recently introduced growing-season (late summer/fall) burns to prairies in east-central Illinois. The purpose of this study was to compare the effects of dormant-season and growingseason burns on vegetation structure and associated avian diversity. Specifically, objectives were to determine if: (1) Growing-season burns increase bird diversity or density of rare/declining species relative to dormant season burns; (2) Growing-season burns cause more bare ground to open and reduce litter and woody species …

Analysis Of Two Maize Mutations That Arose After Exposure To Radiation From A Plutonium-Beryllium Source And Developing Molecular Markers For Antimorph Aei1-5180, An Alternative To Aei To Increase Amylose Content In Maize Endosperm, Prameela Awale

Electronic Theses and Dissertations

This thesis consists of two independent projects dealing with two different aspects of maize. The first project is about the maize reproduction, where we try to uncover the candidate genes of two mutations that affect pollen viability and successful fertilization. The second project is about maize endosperm starch, where we developed molecular markers to characterize a mutant allele that knocks a major starch branching enzyme in maize.

Analysis of two maize mutations that arose after exposure to radiation from a plutonium-beryllium source
Maize is a monoecious and diclinous plant. Sexual reproduction takes place by the fusion of haploid male and …

Utilizing Rhizospheric And Bacterial Endophytes For Use As Potential Bio-Fertilizers For Sustainable Agricultural Production, Vincent Peta

Electronic Theses and Dissertations

Brassica carinata crop production offers an exciting alternative approach to the energy crisis when looking at novel ways to power our motor vehicles. Bacterial endophytes, while residing in host-plant tissues, offer a wide array of plant growth promotion benefits such as nitrogen fixation to impart nitrogen (N) nutrition, phosphate (P) solubilization to make soil-bound phosphate more mobile in soil for plant uptake, can suppress pathogenic microbes such as fungus and produce plant growth hormones to offset stress incurred by the plant. Previous literature has shown that there is large interest in studying endophytes from economically important crops such as wheat, …

Gymnosperm Species Richness Patterns Along The Elevational Gradient And Its Comparison With Other Plant Taxonomic Groups In The Himalayas, Suresh C. Subedi, Khem Raj Bhattarai, Timothy M. Perez, Jay P. Sah

Faculty Publications - Biological Sciences

Phylogenetic constraints on ecophysiological adaptations and specific resource requirements are likely to explain why some taxonomic and functional groups exhibit different richness patterns along climatic gradients. We used interpolated species elevational distribution data and climatic data to describe gymnosperm species richness variation along elevational and climatic gradients in the Himalayas. We compared the climatic and elevational distributions of gymnosperms to those previously found for bryophytes, ferns, and angiosperm tree lineages to understand the respective drivers of species richness. Our study location was divided into three regions: Eastern; Central; and Western Himalayas. In each region, the sum of gymnosperm species richness …

The Influence Of Land Use On The Pollen Diet Of Honey Bee (Apis Mellifera) Colonies In Ellis County, Kansas, Ryan Engel

Master's Theses or Doctor of Nursing Practice

Pollinators are integral to plant ecology as well as to worldwide food availability and security. Understanding how human-driven land use change impacts the nutrition of managed honey bees is important in pollinator conservation efforts and can contribute towards combating recent pollinator declines. The objective of this study was to determine sources of forage for honey bees across different land use types in Ellis County, Kansas, through pollen analysis and taxonomic identification. Replicate study colonies were placed in three separate land use types: Urban, Cropland, or Native/Semi-native prairie. Pollen was sampled every 7 to 14 days throughout a growing season (April …

Genetic Control Of Arbuscular Mycorrhizal Colonization In Helianthus Annuus, Katherine Stahlhut

Honors Undergraduate Theses

Plant symbiosis with arbuscular mycorrhizal (AM) fungi provides many benefits for plants, including increased nutrient uptake, drought tolerance, and belowground pathogen resistance. In order to have a better understanding of the genetic architecture of mycorrhizal symbiosis, we conducted a genome-wide association study (GWAS) by phenotyping a diversity panel of cultivated sunflower (Helianthus annuus) for root colonization under inoculation with the AM fungus Rhizophagus intraradices. This mapping panel consists of 261 inbred lines that capture approximately 90% of the genetic diversity present in the cultivated sunflower germplasm. Using a mixed linear model approach with a high-density genetic map, we …

Non-Native Microstegium Vimineum Populations Collapse With Fungal Leaf Spot Disease Outbreak, Robert Warren

Biology Faculty Datasets

Abstract

Non-native plants may meet little resistance in the novel range if they leave their biological enemies at home. As a result, species invasion can be rapid and appear unlimited. However, with time, organisms may acquire novel enemies in the novel range, or home-range enemies also may colonize the novel range. For plants, several authors have suggested that enemy release may give way to enemy acquisition in which pathogens accumulate and suppresses non-native plants. The ‘naturalization’ that occurs with acquired enemies may take decades to develop, yet most species invasion research lasts less than 4 years, and data tracking plant …

Energy Content Of Seeds Of Common Sunflowers (Helianthus Annuus) In The Diet Of Scaled Quail (Callipepla Squamata) In Southeastern New Mexico, John L. Hunt, Matthew E. Grilliot, Troy L. Best, Dixie Lozano-Lopez, Emily R. Neilson, Isaac C. Castillo

Journal of the Arkansas Academy of Science

We analyzed the energy content of seeds of common sunflowers (Helianthus annuus) obtained from the crops of scaled quail (Callipepla squamata) collected from plains-mesa sand-scrub habitat in Eddy and Lea counties, New Mexico. Seeds were removed from crops and dried for 48 hours at 60°C to remove moisture and to standardize masses. Seeds were then analyzed for gross caloric value (i.e., energy content) in an oxygen bomb calorimeter. Energy content of seeds of common sunflowers from New Mexico was greater than that of many seeds previously reported from the diet of scaled quail and other granivorous …

Floral Trait Architecture In Crop Sunflower (Helianthus Annuus) Under Drought Conditions, Lauren Segarra

All Master's Theses

Longer and more intense droughts are predicted to become more common in the coming century due to anthropogenic climate change. Drought can reduce crop yield and decrease food security. In order to mitigate the negative effects of drought on crop production, it is important to elucidate the underlying mechanisms that promote drought stress resistance in crop plants. Floral traits impact yield, especially in oilseed crops such as sunflower (Helianthus annuus), but their susceptibility to drought stress is understudied. The goal of this study was to describe the floral trait architecture of H. annuus crop lines under drought versus …

A Mechanism For Sex Determination In Dioecious Cultivated Spinach, Nicholas West

Wayne State University Dissertations

While unisexual flowers have evolved repeatedly throughout angiosperm families, the actual identity of sex determining genes has been elusive, and their regulation within populations remains largely undefined. Additionally, sex liability is often observed in unisexual plants and has been correlated to external and internal cues, suggesting that the genes responsible for unisexual morphology are not necessarily segregating but rather differentially regulated. Understanding these processes will be of significant theoretical and agronomical importance.

Cultivated spinach is a dioecious species in which an individual will bear alternative sexual organs. Previous work has identified spinach B class floral organ identity genes, SpAP3 and …