Biology Commons^™

Effect Of Integrated Crop–Livestock Systems On Soil Properties And Microbial Diversity In Soybean Production, Namita Sinha, Brett R. Rushing, Aniruddha Acharya, Shankar Gaapathi Shanmugam

Faculty Publications - Biological Sciences

Integrated crop and livestock systems (ICLSs) have been considered an important management-based decision to improve soil health by carbon sequestration. A two-year study (2019–2021) at CPBES in Newton, MS, was conducted to evaluate the effect of an ICLS on soil microbial diversity in the southeastern region of the USA, representing agroclimatic conditions that are warm and humid. Amplicons targeting bacterial 16S rRNA genes and fungal ITS2 regions were sequenced. Taxonomic assignment and characterization of microbial diversity were performed using QIIME2®. Soil fungal diversity pattern showed significant difference (alpha diversity, p = 0.031 in 2020 and beta diversity, p = 0.037 …

An Extensive Exploration Of Generalist Microbotryum Species Through Host Interactions., Emilee Walters

College of Arts & Sciences Senior Theses

The Microbotryum species complex is a group of fungi, commonly known as anther smuts. Anther smuts are plant parasites that must invade a host plant in order to fulfill their life cycle. As the Microbotryum fungus grows, it sterilizes the host plant, such that infected plants produce fungal teliospores instead of pollen on the male reproductive organs and female reproductive structures do not mature. Microbotryum usually exists as a specialist species, however, there is evidence that several species of anther smuts can exist as generalist species. Comparisons of the infection process and the resulting response of both parasite and host …

Evaluating The Roles Of Pollinators In Shaping The Floral Color Variation Of Phacelia Dubia, Katherine Riddle

All Theses

Floral color variation within a species is a common occurrence and its maintenance has been a long-standing question in evolutionary biology. Differences in flower color between populations can be shaped by pollinator-mediated selection. Pollinators can exhibit innate and learned preferences for color that may influence floral color variation. These preferences may be molded by the visual environment in which pollinators forage. Most current understanding of how pollinators shape floral color variation involves dramatic differences in dominant pollinators between populations (e.g., hawkmoth vs. bee) and most behavioral work utilized model pollinators like honeybee and bumble bee. However, less is known about …

The Effects Of Sunlight On The Decomposition Rate Of Opuntia Humifusa, Paul George, Elena Amonette, Celine W. Seder, Katherine Massaro

Science University Research Symposium (SURS)

Plant decomposition plays a critical role in community and ecosystem ecology by recycling minerals and returning nutrients to the soil. The rate of plant decomposition can be impacted by a multitude of factors including chemical composition of the plant, presence of decomposing microorganisms, temperature, and more. This study sought to quantify the effects of sunlight on plant decomposition. In this project, Opuntia humifusa (prickly pear) were placed outside on the Belmont greenroof to decompose in sunny and shaded environments. The plants were collected over a period of 12 weeks, and data on the masses of the decomposing plants was used …

Bodine: An Agent-Based Modeling Approach To Studying Localized Coexistence Across Environmental Heterogeneity, Alexandra Campbell

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Ad Fontes: Divergence-Time Estimation And The Age Of Angiosperms, Stephen A. Smith, Jeremy M. Beaulieu

Biological Sciences Faculty Publications and Presentations

Accurate divergence times are essential for interpreting and understanding the context in which lineages have evolved. Over the past several decades, debates have surrounded the discrepancies between the inferred molecular ages of crown angiosperms, often estimated from the Late Jurassic into the Permian, and the fossil record, placing angiosperms in the Early Cretaceous. That crown angiosperms could have emerged as early as the Permian or even the Triassic would have major implications for the paleoecological context of the origin of one of the most consequential clades in the tree of life. Here, we argue, and demonstrate through simulations, that the …

Field-Based Courses Still Matter, But Not Like They Used To, Christopher T. Martine

Faculty Journal Articles

Increasingly, field-based courses are providing the first real opportunities for students to experience nature in meaningful ways. As a baseline, even before the content delivery and the graded assessments, this is already enough to change the way a person feels in the world and to spark an appreciation for the life around them.

(Part of a special feature on education in which recent winners of the Botanical Society of America's Charles E. Bessey Award share teaching philosophies and strategies.)

Oxidative Stress Responses In Arabidopsis Thaliana Plants To Uv-B Irradiation, Bolaji Olalere

Theses

The depletion of the stratospheric ozone layer has led to increased levels of harmful UV-B radiation reaching the Earth's surface, posing significant challenges for plant health and development. This study investigates the oxidative stress responses in Arabidopsis thaliana when exposed to UV-B irradiation. Arabidopsis thaliana, a well-established model organism, is particularly sensitive to UV-B, making it ideal for understanding the effects of UV-B-induced oxidative stress. UV-B radiation, a mutagenic component of sunlight, disrupts key metabolic, molecular, and developmental processes, leading to DNA damage, impaired metabolism, and morphological changes. This research aims to explore how UV-B exposure affects the activities of …

A Dendrochronological Analysis Of Longleaf And Associated Pines From The Blackwater Ecological Preserve In Southeastern Virginia, Sarah Durham

Biological Sciences Theses & Dissertations

The field of dendrochronology utilizes annual tree ring growth data to create chronologies, which function as proxies to measure the effect of climate on radial growth. In the southeastern United States, dendrochronological studies involving the effect of climate on the growth of Pinus species exist, but significant gaps persist. For this study, I: 1) created chronologies of earlywood, latewood, and total ring-width growth for longleaf pine (Pinus palustris Mill.), loblolly pine (P. taeda L.), and pond pine (P. serotina Michx.) and 2) conducted a climate analysis on each species to determine how climatic factors affected radial …

Cytotoxic Potential Of Fungi In The Genus Ganoderma, Abril Chao, Omobolanle A. Ayangade, Braham Dhillon, Navi Gill

Mako: NSU Undergraduate Student Journal

Ganoderma lucidum is a mushroom forming fungus that has been used in traditional Chinese medicine for over 2,000 years. G. lucidum, also known as lingzhi or reishi, is consumed in several Asian cultures to promote health and longevity. Bioactive molecules with anticancer properties have been isolated and characterized primarily from the species Ganoderma lucidum, and the cytotoxic potential of other species in the genus Ganoderma remains relatively unclear. Bioactive molecules isolated from mushroom fruiting bodies are demonstrated to have cytotoxicity against different cancer cell lines. Triterpenes and polysaccharides are the two major groups of compounds that exhibit antitumor and anti-inflammatory …

Leaf Anatomy, Morphology, And Water Potential Of Ipomoea Brasiliensis, Croton Punctatus, And Hydrocotyle Bonariensis Growing On The Dunes Of Sapelo Island, Georgia, Thomas E. Hancock, Joseph Watson, Micah Burks

Georgia Journal of Science

Barrier islands are a common geological feature found along the Atlantic and Gulf Coasts of the United States. Researchers have historically described barrier islands, and in particular dune habitats, as being physically controlled. Dune plant species experience high surface temperatures, low water-holding capacity of the substrate, sand movement, salt aerosols, high solar irradiance, and saltwater overwash. In this study, we investigated characteristics of three common plant species growing on the dunes of Sapelo Island, Georgia to understand how they survive and apparently thrive in the harsh, transient, and dynamic environment. Specifically, we examined leaf size, leaf thickness, stomatal frequency, internal …

Aquaponics Experiment For Njit Stem For Success, Christopher Tava

STEM Month

As a member of STEM for Success, I was responsible for constructing and promoting a functioning aquaponics system for the benefit of fifth grade students. With the help of NJIT funding, I was able to design, rapid prototype, and then implement a sustainable aquaponics system that was able to grow lettuce, tomatoes, and kale. Multiple challenges in the design process led to changes, further research, and the implementation of new solutions, as described in detail. Using the aquaponics knowledge gained from the experimental phase, I then led community outreach to elementary schools in my local area. Aquaponics possesses a variety …

Proceedings Of The 2024 Berry Summer Thesis Institute, University Of Dayton. University Honors Program, Magdelyn Stewart, Noah Clemens, Sarah Theewis, Henry Salisbury, Kevin Johnston, Adin Stoller, Meggie Bailey, Erin T. Flaherty, Adelyn Hughes, Marc Nya

Proceedings of the Berry Summer Thesis Institute (2013-Present)

Thanks to a gift from the Berry Family Foundation and the Berry family, the University Honors Program launched the Berry Summer Thesis Institute in 2012. The institute introduces students in the University Honors Program to intensive research, scholarship opportunities and professional development. Each student pursues a 12-week summer thesis research project under the guidance of a UD faculty mentor. This contains the product of the students' research.

Contents:

Testing the Influence of Lithology and Ice Sheet Dynamics on Waterfall Formation in Hocking Hills State Park // Magdelyn Stewart

Step-Rate Manipulation for Improved Performance: A Review// Noah Clemens

Alfred Rosenberg: An …

Seed Dispersal By Martu Peoples Promotes The Distribution Of Native Plants In Arid Australia, Rebecca Bliege Bird, Douglas Bird, Christopher T. Martine, Chloe Mcguire, Leanne Greenwood, Desmond Taylor, Tanisha M. Williams, Peter M. Veth

Faculty Journal Articles

Commensal relationships between wild plants and their dispersers play a key ecological and evolutionary role in community structure and function. While non-human dispersers are often considered critical to plant recruitment, human dispersers have received much less attention, especially when it comes to non-domesticated plants. Australia, as a continent historically characterized by economies reliant on non-domesticated plants, is thus a key system for exploring the ecological role of people as seed dispersers in the absence of agriculture. Here, we utilize a controlled observation research design, employing ecological surveys and ethnographic observations to examine how seed dispersal and landscape burning by Martu …

The Role Of Exogenous Gibberellic Acid (Ga3) Application In Breaking Seed Dormancy In Clematis Hirsutissima​, Ashley Grace Ogle

2024 Symposium

Seed germination in plants is controlled by several mechanisms, including the presence of phytohormones like gibberellins, as well as environmental conditions, such as temperature, light, and moisture. Germination of dormant seeds can be promoted by the exogenous application of Gibberellic Acid (GA3). GA3 acts as a natural endogenous regulator of dormancy. Clematis hirsutissima, commonly known as Sugarbowls, in the plant family Ranunculaceae, is an important perennial species that contributes to biodiversity in western prairie ecosystems by providing habitat for pollinators and wildlife; and it is also a species that shows characteristic embryo dormancy. This native to Washington, has been used …

A Timely Death Of The Tapetum Underlies More Floret1 (Mof1) Regulation Of Male Fertility In Rice, Janlo M. Robil

Biology Faculty Publications

No abstract provided.

Scientific Note: An Incursion Of The Widely-Cultivated Katsura (Cercidiphyllum Japonicum, Cercidiphyllaceae) In Pennsylvania, Kayleigh R. Long, Melody P. Sain, Elizabeth H. Williams, Christopher T. Martine

Faculty Journal Articles

Cercidiphyllum japonicum (katsura) is a dioecious tree native to China and Japan. Although imperiled in parts of its natural distribution, the species has become quite common as a cultivated tree in temperate North America. The species is noted as occasionally escaping cultivation in the eastern United States, but few records of established incursions (and the conditions under which they might recruit) exist in the literature. We here report an incursion of C. japonicum in central Pennsylvania, along with notes on seedling recruitment on the Bucknell University campus.

New Insights On Hybridization In Potamogeton Floridanus (The Florida Pondweed), Kaitlyn R. Sampson

Graduate Theses and Dissertations (2019 - present)

Freshwater ecosystems are some of the most important and highest threatened habitats in the world, and aquatic plants play an important, but often-overlooked, role in maintaining them. Potamogeton is a diverse and ecologically important aquatic plant genus well known for taxonomic difficulty and rampant hybridization. lbis study aimed to 1) test the hypothesis that Potamogeton jloridanus (Florida pondweed) is a hybrid between P. oakesianus and P. pulcher, and 2) to investigate correlations in ecological conditions for the focal species. This study revealed the discovery of a new population of P. jloridanus in Big Coldwater Creek in Santa Rosa Co., FL, …

Investigating Microbe-Plant Symbioses In Space, David Handy

Theses and Dissertations

As life has evolved on Earth, gravity has been a constant around which biological processes have developed, rather than a pressure that has been adapted to. As humanity ventures into space, we remove this constant and can observe a variety of changes in biological systems, such as bone loss in humans, stunted plant growth, or increased virulence in pathogens. The growing body of data shows that life adapts to spaceflight and microgravity in unique ways that, due to our limited understanding, can be difficult to predict. A particularly under-studied area is that of host-microbe interactions. Despite efforts to limit their …

Characterizing The Quorum Sensing (Qs) System In The Model Eukaryote Chlamydomonas Reinhardtii, Kirstin Donnette Cutshaw

Theses and Dissertations

Group behaviors in microorganisms are often regulated by low-molecular weight molecules that enable them to sense population density, a signaling system known as quorum sensing (QS). QS in prokaryotes has provided insight into the role ‘social’ behaviors play in the bacterial world and refined our models of virulence, bacterial motility, and more. While less common, similar behaviors are observed in certain fungi, primarily yeasts, in which QS controls cell morphology, biofilm production, and other phenotypes. We have recently pursued the potential for QS to be more broadly distributed among unicellular eukaryotes, which could significantly alter our understanding of social behaviors …

Climate And Shared Evolutionary History Drive Trait Variation Among Species Of Neotropical Understory Monocots, Eleinis Ávila-Lovera, Oscar M. Vargas, Jennifer L. Funk, Kathleen M. Kay, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Environmental variation commonly drives functional trait diversity within species, among species, and across communities. Climate and shared evolutionary history can both influence trait–environment relationships. We studied variation in plant functional traits among closely related Costus species occurring across environmental gradients, the extent to which this variation occurs within single species, and how that variation may be influenced by shared evolutionary history. We measured leaf, aboveground stem, rhizome, and fine root traits of 17 species of Costus in eight sites in Costa Rica and Panama, which varied in elevation, temperature, and precipitation. We then assessed the relationships among traits and environmental …

The Stability Of Epigenetic Variants That Can Act As Loci Causing Phenotypic Change, Raul Faburrieta

Biology Theses

Epigenetic variations are a possible source of heritable phenotypic variation. In this study I focus on phenotypic alterations seen in epigenetic Recombinant Inbred Lines (epiRILs) of Arabidopsis thaliana. These epiRILs allow me to study the effects differentially methylated regions (DMRs) have on phenotypic variance. In a study performed in 2014 by Cortijo et al., they found that DMR’s affect flowering time and root length when grown under greenhouse conditions. In this study, I replicated the Cortijo et al. (2014) study, with some changes, to see whether the same significant eQTL regions are found. I found that, some of the eQTLs …

On The Importance Of Sequence Alignment Inspections In Plastid Phylogenomics – An Example From Revisiting The Relationships Of The Water-Lilies, Jessica A. Roestel, John H. Wiersema, Robert K. Jansen, Thomas Borsch, Michael Gruenstaeudl

Biological Sciences Faculty Publications

The water-lily clade represents the second earliest-diverging branch of angiosperms. Most of its species belong to Nymphaeaceae, of which the “core Nymphaeaceae”—comprising the genera Euryale, Nymphaea and Victoria—is the most diverse clade. Despite previous molecular phylogenetic studies on the core Nymphaeaceae, various aspects of their evolutionary relationships have remained unresolved. The length-variable introns and intergenic spacers are known to contain most of the sequence variability within the water-lily plastomes. Despite the challenges with multiple sequence alignment, any new molecular phylogenetic investigation on the core Nymphaeaceae should focus on these noncoding plastome regions. For example, a new plastid phylogenomic study on …

Assessing Structural Variation In And Out Of The Classroom: Characterizing Structural Variation Within Campanula Americana And Effects Of Long Read Sequencing On Students Learning, Tyler Gandee

Masters Theses, 2020-current

Cytonuclear incompatibilities are proposed to be one of the first genetic barriers to arise during speciation, so understanding the underlying evolutionary forces that contribute to cytonuclear incompatibilities is important. Many studies have looked at SNP level variation in the plastid genome and its relationship with cytonuclear incompatibility, but no studies have examined structural variation and its relationship to cytonuclear incompatibility, particularly at the early stages of speciation, i.e. within species. Campanula americana is a great system for this because it exhibits cytonuclear incompatibility and the family in which it is found, the Campanulaceae, exhibits rapidly evolving plastid genomes, including …

The Ecology And Genetic Diversity Of Buckleya Distichophylla (Santalaceae), Montana Hill

Masters Theses, 2020-current

Piratebush (Buckleya distichophylla) is a native, rare, shrub found along the Blue Ridge mountains in North Carolina, Virginia, and Tennessee. Research on its ecology and genetic diversity is limited due to its rarity; only one population on Poor Mountain has been studied extensively in the past. To determine if there are ecological differences between populations of B. distichophylla, research on sex distribution, floral visitors, individual length, leaf area, and amount of light that reached each specimen were conducted and then compared between a population located on Dragon’s Tooth Trail and a population on Poor Mountain, both located …

Lmpact Of Salmonella Enterica Effector Proteins On Plant Physiology And Immunity, Sara Qader

Honors Theses

Salmonella enterica serovar Typhimurium are primarily recognized as pathogens associated with foodborne illnesses in humans. Salmonella also can colonize plant tissue effectively. The pathogen relies on type III secretion systems (T3SS) to infect mammals and plants successfully and counteract the immune response. Understanding the molecular mechanisms underlying Salmonella’s interactions with plants is essential for developing effective strategies to reduce its impact on human health and agriculture. Effector proteins, known for their role in modulating host-pathogen interactions, have been implicated in the virulence and pathogenicity of Salmonella. However, their specific functions and contributions to Salmonella’s interactions with plants remain largely unknown. …

Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell

Faculty Journal Articles

Driven by overlapping interests in plants, art, and diversity in sex expression, Anna Kell (Department of Art and Art History) and Chris Martine (Department of Biology) developed a course that integrates the perspectives of a visual artist and a botanist. Art & Sex Through the Lens of Botany seeks to impart the importance of making connections across disciplines and the value of visual literacy across academic lines. The course introduces foundational concepts in each field and encourages students to integrate and explore these different systems of knowledge and their intersections. In addition to developing fluencies related to both general botany …

Clonal Plants' Traits And Responses Following Fire Disturbance In Ponderosa Pine Ecosystems In The Colorado Front Range, Raymond Erskine

Master's Theses

Mountain ecosystems are currently experiencing increasing impacts of disturbances (e.g., wildfire) due to global changes in climate and land use, leading to significant changes in vegetation composition and landscape dynamics. Clonal plants, characterized by their vegetative reproduction strategies, offer a range of ecologically important traits to cope with disturbances. However, clonality is often excluded in studies of post-fire vegetation dynamics in mountain ecosystems, and our knowledge of the ability of clonal plants to respond to differing disturbance regimes is limited. Therefore, I examined the response of understory vegetation following fire disturbance in burned and unburned ponderosa pine stands of the …

Analysis Of Water Pollutants Across Greater Omaha, Desmond Marshall

Theses/Capstones/Creative Projects

Water is a finite resource, and most water has the potential to become contaminated in sitting bodies. Health complications have an increased chance of occurring when these water sources have pollutants. Preventative and treatment methods are components of the legislation put in place to prevent concentrations from reaching levels capable of causing these ailments. However, sites sometimes fail to keep them under tolerated levels. This study is intended to examine if several locations across Omaha are keeping pollutants under legal concentrations and analyze any trends in the data. Locations (n=10) are sampled twice, with exactly two-weeks between collections. The water …

Clonal Growth And Trait Variation In The Colorado Front Range: The Influence Of Elevation And Ecosystem, Jordan Conley

Master's Theses

Amid global climate change, exploring adaptive strategies among alpine flora, particularly through clonal growth, becomes critical for biodiversity conservation. This study aims to explore the patterns of dominance and distributions among clonal species across environmental gradients in the Colorado Front Range, employing a trait-based comparative analysis to understand the adaptive strategies of alpine flora and their implications for conservation amid rapid climate change. We focused on two species, studying traits like lateral spread, bud count, and bulbil numbers. Advanced statistical methods such as Permutational Multivariate Analysis of Variance (PerMANOVA) and Multi-Response Permutation Procedures (MRPP) were used to evaluate community compositions …