Biology Commons^™

A Call For A Statewide Bioinformatics Institute, John R. Rose

Journal of the South Carolina Academy of Science

No abstract provided.

With The Help Of South Carolina Research Universities, Scra Demonstrates Leadership In Applied Research And Commercialization Within Sc, Bill Mahoney

Journal of the South Carolina Academy of Science

No abstract provided.

Sc Inbre: A Catalyst For Biomedical Research Development In South Carolina, Lucia A. Pirisi-Creek M.D, Scott Little, Ph.D.

Journal of the South Carolina Academy of Science

No abstract provided.

Thermoelectric Applications For Imaging Infrared Focal Plane Arrays, Roy T. Littleton

Journal of the South Carolina Academy of Science

No abstract provided.

An Embarrassment Of Riches: The Enzymology Of Rna Modification, Dirk Iwata-Reuyl

Chemistry Faculty Publications and Presentations

The maturation of transfer RNA (tRNA) involves extensive chemical modification of the constituent nucleosides and results in the introduction of significant chemical diversity to tRNA. Many of the pathways to these modified nucleosides are characterized by chemically complex transformations, some of which are unprecedented in other areas of biology. To illustrate the scope of the field, recent progress in understanding the enzymology leading to the formation of two distinct classes of modified nucleosides, the thiouridines and queuosine, a 7-deazaguanosine, is reviewed. In particular, recent data validating the involvement of several proposed intermediates in the formation of thiouridines are discussed, including …

Polyaniline Nanofiber-Based Gas Sensors, Zhe-Fei Li, Frank D. Blum, Massimo F. Bertino, Chang-Soo Kim

Chemistry Faculty Research & Creative Works

There has been recent interest in conducting polymers that have very promising chemical and electrical applications. Some of these polymers have shown great potential for use in sensors.1 Polyaniline is one particular example of a prospective material. In our laboratory, we have studied the synthesis of polyaniline nanofibers. We have carried out one-pot syntheses to obtain polyaniline nanofibers in aqueous solutions where the polymerization was influenced by γ-radiation2 or UV-radiation.3 This polymer can also be patterned with an appropriate photo mask. In our present report, polyaniline nanofiber thin film sensors have been fabricated in one step by employing UV-irradiation and …

Oviposition Behavior Partitions Aquatic Landscapes Along Predation And Nutrient Gradients, C. A. Binckley, W. J. Resetarits Jr.

Biological Sciences Faculty Publications

That individuals attempt to minimize the ratio of mortality risk/growth rate (μ/g) when foraging within individual habitat patches is well established. Do species partition among spatially discrete communities embedded in complex landscapes in a similar manner? We investigated how 3 ovipositing species (2 Hyla treefrogs and a hydrophilid beetle, Tropisternus lateralis) responded to simultaneous gradients of nutrients and predation risk. Species partitioned our experimental metacommunity primarily by reducing oviposition with fish. Tropisternus positively responded to increased nutrients, but the effect decreased with increasing risk, as predicted by μ/g theory. Use of fish habitats by Tropisternus was unrelated to breeding …

Editorial, First Science And Policy Issue, Jscas

Journal of the South Carolina Academy of Science

No abstract provided.

Inflammation: The Key To Health And Disease, Prakash Nagarkatti Ph. D, Donald J. Dipette M. D.

Journal of the South Carolina Academy of Science

No abstract provided.

Solution Chemical Synthesis Of Nanostructured Thermoelectric Materials, Xiaohua Ji, Terry M. Tritt, Xinbing Zhao, Joe W. Kolis

Journal of the South Carolina Academy of Science

No abstract provided.

Phonon Scattering Effects On Thermal Conductivity Of Tinisn-Based Half-Heusler Alloys, S. Bhattacharya, T. M. Tritt, M. J. Skove, M. Russell, S. J. Poon, V. Ponnambalam, Y. Xia, N. Thadhani

Journal of the South Carolina Academy of Science

No abstract provided.

Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz

Biology Faculty Publications

The utility of bulk ground conductivity (BGC) measurements in the estimation of submarine groundwater discharge (SGD) was investigated at four sites covering a range of hydrogeological settings, namely Cockburn Sound (Australia); Shelter Island (USA); Ubatuba Bay (Brazil) and Flic-en-Flac Bay (Mauritius). At each of the sites, BGC was surveyed in the intertidal zone, and seepage meters were used for direct measurements of SGD flow rates. In the presence of detectable salinity gradients in the sediment, a negative correlation between SGD and BGC was recorded. The correlation is site-specific and is dependent on both the type of sediment and the mixing …

Validation Of An Nsp-Based (Negative Selection Pattern) Gene Family Identification Strategy, Ronald L. Frank, Cyriac Kandoth, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Gene family identification from ESTs can be a valuable resource for analysis of genome evolution but presents unique challenges in organisms for which the entire genome is not yet sequenced. We have developed a novel gene family identification method based on negative selection patterns (NSP) between family members to screen EST-generated contigs. This strategy was tested on five known gene families in Arabidopsis to see if individual paralogs could be identified with accuracy from EST data alone when compared to the actual gene sequences in this fully sequenced genome. Results: The NSP method uniquely identified family members in all …

Evaluation Of Aerial Cluster Sampling Of Double-Crested Cormorants On Aquaculture Ponds In Mississippi, Brian S. Dorr, Loren W. Burger Jr., Scott C. Barras

United States Department of Agriculture Wildlife Services: Staff Publications

Concern over increasing numbers of double-crested cormorants (Phalacrocorax auritus) and their impacts on channel catfish (Ictalurus punctatus) aquaculture has resulted in increased need for quantitative information to develop and evaluate depredation management efforts. We evaluated aerial surveys in a stratified cluster sampling (SCS) design to estimate and monitor abundance of cormorants on catfish aquaculture ponds in the Yazoo River Basin of Mississippi, USA (hereafter Yazoo Basin). Twice monthly abundance estimates and coefficient of variation during winter averaged 8,128 (n = 29, SE = 1,233) and 33% (n = 29, SE = 0.02), respectively. Counts of cormorants …

Chemical Constituents And Biological Activity Of Three Tanzanian Wild Mushroom Species, L.D. Baraza, C. C. Joseph, M. J. Moshi, M. H. H. Nkunya

Tanzania Journal of Science

The three Tanzanian wild mushroom species Termitomyces letestui, Lactarius edulis and Agaricus sp. aff. arvensis yielded ergosterol, 5,8-peroxyergosterol and ergosta-5,22-dien-3β-ol, and a mixture of ergosterol, ergosta-7,22-dien-3β-ol and ergosta-7-en-3β-ol whose composition was deduced from gas chromatography/mass spectroscopic (GC/MS) analysis of the trimethysilylated mixture. GC/MS analysis of the lipid fraction from T. letestu revealed the presence of linoleic (C18:2), stearic (C18:0), oleic (C18:1), palmitic (C16:0), pentadecanoic (C15:0) and myristic (C14:0) acid. Polar T. letestui and L. edulis fractions yielded α,α,1'trehalose andmannitol. Some of the crude extracts from the three mushroom species showed mild antimicrobial, mosquito larvicidal and cytotoxic activities. The chemical composition …

Effects Of An Inserted Endoscope On Chyme Movement In Small Intestine – A Theoretical Model, V. P. Srivastava

Applications and Applied Mathematics: An International Journal (AAM)

The effects of an inserted endoscope on chyme movement in small intestine (gastrointestinal tract) have been investigated. The flow of chyme is induced by a progressive wave of area contraction along the length of intestinal wall under long wavelength approximation. It is found that the chyme movement is significantly influenced due to the presence of the endoscope. The pressure drop assumes lower values for higher values of the endoscope radius for small flow rates but the property reverses with increasing flow rates. The friction forces at intestinal wall and endoscope possess character similar to the pressure drop for any given …

Prey Naiveté: Evolutionary And Ecological Implications, Jonathan G. Cox

All-Inclusive List of Electronic Theses and Dissertations

Despite its ecological importance, the concept of prey naivete has become a biological truism that receives little study. I explored the evolution of naivete and its likely influence on two major ecological patterns: a) the historically greater destructiveness of freshwater predator introductions, and b) the greater strength of aquatic trophic cascades. In a review of the ecological literature, I demonstrate that the conditions for the evolution of naivete (isolation) exist in freshwater habitats at multiple spatial scales. In addition, I show that freshwater prey exhibit naivete which could be responsible for the high impacts of freshwater predator introductions. I then …

Determining Domain Similarity And Domain-Protein Similarity Using Functional Similarity Measurements Of Gene Ontology Terms, Lisa Michelle Guntly, Jennifer Leopold, Anne M. Maglia

Computer Science Faculty Research & Creative Works

Protein domains typically correspond to major functional sites of a protein. Therefore, determining similarity between domains can aid in the comparison of protein functions, and can provide a basis for grouping domains based on function. One strategy for comparing domain similarity and domain-protein similarity is to use similarity measurements of annotation terms from the Gene Ontology (GO). In this paper five methods are analyzed in terms of their usefulness for comparing domains, and comparing domains to proteins based on GO terms.

Land Cover Types Of The Las Vegas Wash, Nevada, Seth A. Shanahan, Dave Silverman, Art Ehrenberg

Publications (WR)

Vegetation type, extent, continuity, and structure are some of the most important factors that determine wildlife diversity and distribution. Other contributing factors that shape wildlife communities include disturbance, competition, climate, and water availability. Because vegetation communities in the southwestern U.S. gradate sharply along zones of soil moisture, wildlife are often restricted to specific vegetation types. Along the Las Vegas Wash (Wash), Nevada, more than 250 wildlife species have been documented to occur in distinct wetland, riparian, and upland vegetation types. Recent studies have investigated the diversity and distribution of amphibians, birds, fishes, mammals, and reptiles (Shanahan 2005, 2005a, Van Dooremolen …

Effects Of Calcium Availability On The Reproductive Output Of Insectivorous Bats, Christina M. Booher

All-Inclusive List of Electronic Theses and Dissertations

Reproduction is a period of high calcium demand in vertebrates, and calcium deficiency can limit reproductive output in mammals. Insects are a poor calcium source, suggesting that insectivorous species are more likely to be calcium deficient. Pregnant big brown bats (Eptesicus fuscus) consume 10 times less calcium than they are estimated to require. To accommodate calcium demand during pregnancy, many mammals mobilize more calcium from the skeleton, and extensive bone loss has been observed in some bats during pregnancy. A conflict may arise between the female and developing embryo over allocation of limited calcium supplies, which could limit reproductive output …

Depleted Carbon Monoxide In Fragment C Of The Jupiter-Family Comet 73p/Schwassmann-Wachmann 3, M. Disanti, W. Anderson, G. Villanueva, B. Bonev, K. Magee-Sauer, E. Gibb, M. Mumma

Physics Faculty Works

Carbon monoxide emission was targeted in fragment C of the recently split Jupiter-family comet 73P/Schwassmann-Wachmann 3 during its 2006 apparition, using the Cryogenic Echelle Spectrograph (CSHELL) at the NASA IRTF on Mauna Kea, Hawaii. Simultaneous sounding with H2O near 4.65 μm revealed highly depleted CO, consistent with a mixing ratio of 0.5% ± 0.13%. Along with depleted CH3OH but nearly normal HCN, this may indicate that this comet formed in the inner giant planets' region or, alternatively, that it formed relatively late, after significant clearing of the protosolar nebula.

Slides: The Future Of Federal Wetlands Regulation, Mark Squillace

The Future of Federal Wetlands Regulation After Rapanos (May 10)

Presenter: Professor Mark Squillace, Director, Natural Resources Law Center, University of Colorado School of Law

35 slides

Agenda: The Future Of Federal Wetlands Regulation After Rapanos, University Of Colorado Boulder. Natural Resources Law Center

The Future of Federal Wetlands Regulation After Rapanos (May 10)

Hot-Topic Discussion held at Brownstein Hyatt Farber Schreck in Denver, Colorado on May 10, 2007 from 12:00 p.m. to 1:15 p.m.

Speaker: Mark Squillace, Director of the Natural Resources Law Center, University of Colorado School of Law.

Commentators: Wayne Forman and Michelle Kales, attorneys, Brownstein Hyatt Farber Schreck

"Rapanos v. United States, 547 U.S. 715 (2006), was a United States Supreme Court case challenging federal jurisdiction to regulate isolated wetlands under the Clean Water Act. It was the first major environmental case heard by the newly appointed Chief Justice, John Roberts and Associate Justice, Samuel Alito. The Supreme Court …

Ua66 2007 Student Awards Ceremony, Wku Ogden College Of Science & Engineering

WKU Administration Documents

Program recognizing Ogden College students with brief list of activities for each student.

Spatial Variation In Sea Urchins, Fish Predators, And Bioerosion Rates On Coral Reefs Of Belize, Jocelyn Brown-Saracino, Paulette Peckol, H. Allen Curran, Martha L. Robbart

Biological Sciences: Faculty Publications

Although sea urchins are critical for controlling macroalgae on heavily fished coral reefs, high densities threaten reefs, as urchins are also prodigous bioeroders. This study examined urchin population characteristics, bioerosion rates, their fish predators (Labridae), and potential competitors (Scaridae) on unprotected reefs and a reef within a marine protected area (MPA) in the lagoonal regions off Belize. Urchin density (<1 >m-2) and bioerosion rates (∼0.2 kg CaCO3m-2year-1) were lowest and members of the Labridae were the highest (∼20 fish 200 m-3) within the MPA, while several unprotected reefs had higher (∼18-40 m-2) urchin densities, lower Labridae abundances (1-3 fish 200 …

The Evolution Of Zinjanthropus Boisei, Paul J. Constantino, Bernard A. Wood

Biological Sciences Faculty Research

Many people assume that OH 5, the type specimen of Paranthropus boisei, collected in 1959, was the first evidence of that taxon to be found, but OH 3, recovered in 1955, predated the discovery of OH 5 by four years. Thus, Paranthropus boisei recently celebrated the equivalent of its fiftieth birthday. This review marks that milestone by examining the way our understanding of this taxon has changed during its fifty, or so, year history.

Sedimentology Of Acid Saline Lakes In Southern Western Australia: Newly Described Processes And Products Of An Extreme Environment, Kathleen Counter Benison, Brenda Beitler Bowen, Francisca Oboh-Ikuenobe, Elliot A. Jagniecki, Deidre A. Laclair, Stacy L. Story, Melanie R. Mormile, Boyoung Hong

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Naturally acid saline systems with pH values between 1.7 and 4 are common on the Yilgarn Craton of southern Western Australia. a combination of physical and chemical processes here yield a previously undescribed type of modern sedimentary environment. Flooding, evapoconcentration, desiccation, and eolian transport at the surface, as well as influx of acid saline groundwaters, strongly influence these lakes. Halite, gypsum, kaolinite, and iron oxides precipitate from acid hypersaline lake waters. Shallow acid saline groundwaters affect the sediments of the lakes and associated mudflats, sandflats, channels, and dunes by precipitating early diagenetic halite, gypsum, iron oxides, clays, jarosite, and alunite. …

Integrated Fisheries Management Allocation Report Western Rock Lobster Resource, Integrated Fisheries Allocation Advisory Committee

Fisheries Management Papers

This report, prepared by the Integrated Fisheries Allocation Advisory Committee (IFAAC), contains the committee’s advice and recommendations to the Minister for Fisheries on allocations for the western rock lobster resource. The setting of explicit allocations to sectors (Customary, recreational and commercial) is integral to Integrated Fisheries Management (IFM) in Western Australia.

Management Of The Houtman Abrolhos System. A Draft Review 2007 - 2017, Department Of Fisheries (Western Australia) On Advice From The Abrolhos Islands Management Advisory Committee

Fisheries Management Papers

This review contains a brief description of the Abrolhos System and its special values. It also states the goal and principal objectives for management during the next ten years (2006-2016), along with updated strategies to achieve these objectives. The document succinctly outlines the direction for multiple use management of the Houtman Abrolhos Islands as determined by the Abrolhos Islands Management Advisory Committee (AIMAC). The Committee’s role is to advise the Minister for Fisheries on management of the Abrolhos Islands and the Abrolhos Islands Fish Habitat Protection Area.

Review: A Creationist Review And Preliminary Analysis Of The History, Geology, Climate, And Biology Of The Galápagos Islands, Timothy R. Brophy

Faculty Publications and Presentations

No abstract provided.