Biology Commons^™

Seasonal Dynamics And Micro-Climatic Preference Of Two Alpine Endemic Hypogean Beetles, Stefano Mammola, Elena Piano, Pier Mauro Giachino, Marco Isaia

International Journal of Speleology

Hypogean beetles generally live in stable environments, characterized by constant temperature and high relative humidity. Changes in the underground microclimatic conditions generally induce local migrations of the beetles through the hypogean environment in search of suitable microhabitats. We studied the seasonal dynamics and the micro-climatic preference of two Alpine endemic hypogean beetles - Sphodropsis ghilianii (Coleoptera, Carabidae) and Dellabeffaella roccae (Coleoptera, Cholevidae) - in the hypogean complex of Pugnetto (Graian Alps, Italy). We surveyed the two species for one year, using baited pitfall traps and measuring temperature and humidity along the two main caves. We used logistic regression mixed models …

Traversing Swanton Road, 20th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

The Characterization Of A Vital Wisconsin Waterway: A Biological Assessment Of The Lower Fox River From 2006-2014, Emily L. Kiehnau

Lawrence University Honors Projects

The Lower Fox River has historically been used as a navigational crossroads, a waste disposal system, and source of hydroelectric power. Over the years, heavy use of the river has negatively affected water quality and the overall health of the system. Unhealthy rivers cannot function properly. Biological assessment based on animal surveys are often used to determine river health. I used data from the Lawrence University and Fox River Navigational System Authority invasive species-monitoring project to explore how the distribution of animals in the Fox River has changed over time and across locations. Monitoring surveys have taken place between June …

Generation And Assessment Of Muscular Mutations In Caenorhabditis Elegans, Katie N. Reget

DePaul Discoveries

A study of egg laying muscular mutations in C. elegans was conducted over a span of ten weeks. Parent (EGL-19) and wild type (N2) were exposed to mutagenesis and integration mutation techniques to generate genetic and physical different mutants. Overall, four genetic, physical and phenotypically unique worms were generated for the process of mutagenesis. The worms used in the process of integration were found to have shortened life spans, reduced size and decrease numbers of progeny.

Nsf Grant Helps Preserve Parasite Collections [Press Release], Scott Gardner, Leslie Reed

Scott L. Gardner Publications

The National Science Foundation has awarded a $500,000 grant that will allow four major parasite collections to be digitized. The collections are part of UNL's Harold W. Manter Laboratory of Parasitology. Scott Gardner (pictured) is the curator and director of the Manter Laboratory.

A $500,000 grant from the National Science Foundation will allow the Harold W. Manter Laboratory of Parasitology to digitally preserve four major collections of parasite specimens donated to the University of Nebraska-Lincoln during the past five years.

Section Abstracts: Natural History And Biodiversity

Virginia Journal of Science

Abstracts of the Natural History and Biodiversity Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Reproductive Performance Of Kittlitz's Murrelet In A Glaciated Landscape, Icy Bay, Alaska, Usa, Michelle L. Kissling, Scott M. Gende, Stephen B. Lewis, Paul Lukacs

Wildlife Biology Faculty Publications

Kittlitz's Murrelet (Brachyramphus brevirostris) is a dispersed-nesting seabird endemic to Alaska and eastern Russia that may have experienced considerable population declines in some parts of its range in the past few decades. Poor reproduction has been suggested as the demographic bottleneck, yet there are no direct estimates of reproduction in a glaciated area where this species reaches its highest densities at sea during the breeding season. The lack of demographic information in glacial habitats has limited our ability to interpret population trends and to clarify whether the presence of glaciers affects reproductive performance. Between 2007 and 2012, we …

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

Traversing Swanton Road, 19th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Monarch Butterfly, Sam Baker

Sustainability

No abstract provided.

Traversing Swanton Road, 18th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Subsistence Strategies In Traditional Societies Distinguish Gut Microbiomes, Alexandra J. Obregon-Tito, Raul Y. Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C. Clemente, Luke K. Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M. Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T. Ozga, Cecil M. Lewis Jr.

Biology Faculty Articles

Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that Treponema are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional …

Identification Of Aflatoxins And Ochratoxin A In Selected Imported Pet Food, Iffat Tahira, Nighat Sultana, Nafeesa Qudsia Hanif

Journal of Bioresource Management

The current study was conducted to analyze the aflatoxins (AF i.e. AFB1, AFB2, AFG1 AFG2) and ochratoxin A (OTA) in imported pet food. A total of five hundred and ten commercially available imported pet food samples of cat (solid = 240, semi-solid = 90) and dog (solid = 150, semi-solid = 30) were collected from retailers and analyzed by chromatographic technique i.e. HPTLC. Results revealed 45.83% (mean, 3.90 ppb) and 18% (mean, 4.83 ppb) of AFB1 incidence in solid pet foods of cats and dogs, respectively. However, lower levels i.e. 8.88% (mean, 4.60ppb) and 6.66% (mean, 2.80ppb) of AFB1 were …

The Population Estimate Of Pheasant Tailed Jacana, Hydrophasianus Chirurgus In Wetlands Of Pakistan, Zahid Iqbal Khan, Mohammad Shareef Mughal

Journal of Bioresource Management

Pheasant Tailed Jacana, Hydrophasianus chirurgus, is the only beautiful bird maintaining its presence in the abandoned wetlands of Punjab during the summer season. The population distribution appears, between 298 and 347, which was highest (83-96) at Marala and lowest (21-57) at Balloki, with density found to be highest (3/km2) and lowest (0.3/ km2), respectively. Being a migratory bird, March was observed as the start of arrival, and October was observed as completion of departure from the study areas.

Determination Of Acute Toxicity Of Copper And Cobalt For Tilapia Nilotica, Asif Naseem Rai, Asmat Ullah, Jibran Haider

Journal of Bioresource Management

During the present investigation, the 96-hr LC50 and lethal concentrations of copper and cobalt for Tilapia nilotica were determined under controlled laboratory conditions at constant pH (7.25), total hardness (255 mgL-1) and temperature (30 °C). During acute toxicity studies, the physico-chemical parameters of water viz. temperature, pH, dissolved oxygen, electrical conductivity, carbon dioxide, total ammonia, calcium, sodium, magnesium, potassium and total hardness were monitored at 12-hr intervals for each test. Fish were exposed to different concentrations of copper and cobalt, separately, starting from zero with an increment of 0.05 and 0.5 mgL-1. After 96-hr exposure of various concentrations of each …

Evaluation Of Biochar As Fertilizer For The Growth Of Some Seasonal Vegetables, Kainaat William, Rizwana Aleem Qureshi

Journal of Bioresource Management

Biochar was used to replace inorganic fertilizers. Biochar was synthesized by the process of pyrolysis using horse dung (5kg) and dry grass (25kg) to check its effect on the growth of some local vegetables i.e. okra, beans, coriander and mint. These plants were kept in three different environments i.e. outdoor, indoor and greenhouse conditions. In each condition three replications were made for each plant and biochar was applied on them. Control plants (without biochar) were also grown in each condition. Parameters studied were pH, water holding capacity, ammonia, nitrates, chlorophyll content, fertility analysis, temperature and humidity, number of leaves, plant …

A Meta-Analysis Of Soil Biodiversity Impacts On The Carbon Cycle, M.-A. De Graaff, J. Adkins, P. Kardol, H. L. Throop

Biology Faculty Publications and Presentations

Loss of biodiversity impacts ecosystem functions, such as carbon (C) cycling. Soils are the largest terrestrial C reservoir, containing more C globally than the biotic and atmospheric pools together. As such, soil C cycling, and the processes controlling it, has the potential to affect atmospheric CO₂ concentrations and subsequent climate change. Despite the growing evidence of links between plant diversity and soil C cycling, there is a dearth of information on whether similar relationships exist between soil biodiversity and C cycling. This knowledge gap occurs even though there has been increased recognition that soil communities display high levels of …

Identification Of Saccharina Groenlandica (Phaeophyceae) Around The Svalbard Archipelago: Dna Barcoding Using Cytochrome C Oxidase Subunit 1 (Coi), Anniken Lydon

Master's Theses

In the Arctic, brown algae (kelps) and seaweeds are ecologically important: providing habitat, protection, and nutrients for invertebrate and vertebrate species living in nearshore environments. Migrations of biota between the North Pacific and North Atlantic Oceans have occurred periodically during Earth’s history leading to colonization of the Arctic Ocean. Around 3.5 Mya the “Great Trans-Arctic Biotic Interchange” occurred and the Laminariales order of kelp, thought to be of North Pacific origin, underwent a massive radiation and speciation event around the Arctic Ocean. Phylogenetic analysis performed on “Laminaria-like” specimens collected from six sampling locations around the Svalbard Archipelago identified …

On The Analysis Of Phylogenetically Paired Designs, Jennifer L. Funk, Cyril Rakovski, J. Michael Macpherson

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As phylogenetically controlled experimental designs become increasingly common in ecology, the need arises for a standardized statistical treatment of these datasets. Phylogenetically paired designs circumvent the need for resolved phylogenies and have been used to compare species groups, particularly in the areas of invasion biology and adaptation. Despite the widespread use of this approach, the statistical analysis of paired designs has not been critically evaluated. We propose a mixed model approach that includes random effects for pair and species. These random effects introduce a “two-layer” compound symmetry variance structure that captures both the correlations between observations on related species within …

Lineage Sorting In Multihost Parasites: Eidmanniella Albescens And Fregatiella Aurifasciata On Seabirds From The Galapagos Islands, Jose Rivera-Parra, Iris Levin, Kevin Johnson, Patricia Parker

Biology Department Faculty Works

Parasites comprise a significant percentage of the biodiversity of the planet and are useful systems to test evolutionary and ecological hypotheses. In this study, we analyze the effect of host species identity and the immediate local species assemblage within mixed species colonies of nesting seabirds on patterns of genetic clustering within two species of multihost ectoparasitic lice. We use three genetic markers (one mitochondrial, COI, and two nuclear, EF1‐α and wingless) and maximum likelihood phylogenetic trees to test whether (1) parasites show lineage sorting based on their host species; and (2) switching of lineages to the alternate host species depends …

Phylogenetic And Fossil Evidence For A Common Body Size Attractor In Marine Mammals, William Gearty, Jonathan Payne

School of Biological Sciences: Presentations

Evolutionary transitions between terrestrial and aquatic habitats are rare and often have large effects on the evolutionary trajectory of the clade making the transition. Following a single transition from the marine realm to the terrestrial realm, tetrapods have subsequently re-evolved a marine lifestyle at least 30 separate times. At least six of these re-invasions of the water occurred within crown-group mammals and four [sirenians (Sirenia), whales (Cetacea), pinnipeds (Pinnipedia), and otters (Lutrinae)] clades are extant. Although marine mammals are widely known to be larger than their terrestrial sister groups, the extent to which the body size evolution of these clades …

Clues To Aquatic Beetle Research In Southeast Asia: A Multitude Of Ecological Niches, Microhabitats And Deduced Field Sampling Techniques, Hendrik Freitag

Biology Faculty Publications

The basic ecological classification of Southeast Asian beetle families that are associated with aquatic habitats is reviewed. The microhabitat preferences of the taxa are examined on family level with generic examples. Suitable collection methods for quantitative and qualitative sampling are suggested which take into account the different ecological adaptation patterns and microhabitat preferences.

Population Differentiation And Habitat Selection Of A Montane Red Fox Population In The Greater Yellowstone Ecosystem, Patrick Cross

Graduate Student Theses, Dissertations, & Professional Papers

Montane red fox (Vulpes vulpes) populations across the western United States are genetically and morphologically distinct from foxes at lower elevations. These montane populations also share a preference for subalpine forest habitats. One hypothesis is that they stem from boreal forest-associated ancestors that expanded during the Pleistocene when boreal forests extended farther south than they do today. Forest habitat selection may therefore aid the persistence of native populations surrounded by non-native conspecifics. Alternatively, this behavior may be an avoidance mechanism in response to competition with larger coyotes (Canis latrans), or a product of the fox's natural adaptability. The red fox …

Assessing Changes In Avian Communities, Jessie D. Golding

Graduate Student Theses, Dissertations, & Professional Papers

Grazing is a potentially powerful tool to address wildlife declines associated with land use conversion in the western United States. Grazing systems can be manipulated to achieve desired vegetation outcomes, preserve native habitat and economically benefit multiple stakeholders. As a result, systems designed to benefit native ecosystems are being widely implemented. However, the benefits of these grazing systems on many wildlife communities remain relatively unexplored. Songbirds provide an ideal study system to test these benefits because they continue to use native habitat that is currently grazed. Given limited time and resources, conservation practitioners often monitor a single focal species or …

European Frogbit (Hydrocharis Morsus-Ranae) In The Champlain/Adirondack Region: Recent Inferences, Chris Martine, Stephen Langdon, Timothy Shearman, Casey Binggeli, Timothy B. Mihuc

Faculty Journal Articles

As part of its north-south movement following introduction to Canada, Hydrocharis morsus-ranae L. (Hydrocharitaceae) has recently become established in slow-moving waters of the Champlain/Adirondack region of the northeastern US. The species is present on both the New York and Vermont shores of Lake Champlain and, so far, at a single location in the interior of the Adirondack Park. The southernmost Champlain/Adirondack occurrence is in the Champlain Canal south of Whitehall, NY (L. Eichler, Darrin Freshwater Institute, pers. comm.), within 25 miles of the Hudson River watershed—a population first recorded around 2006. Entry into the Hudson watershed, whether from the canal …

Behavioral Response Of Pacific Lamprey (Entosphenus Tridentatus) To Predator Odors, Laurie L. Porter

All Master's Theses

Pacific lamprey (Entosphenus tridentatus), a species facing serious threats to their existence, experience a number of challenges in reaching their desired spawning grounds during the adult migratory phase, and predators are suspected to be one of these challenges. Understanding if Pacific lamprey respond to predator odorants may provide a management tool for use in conjunction with attractants in guiding lamprey to suitable spawning habitat and deterring them from poor habitat. Previous research has failed to explore Pacific lamprey response to predator odorants, although much research exists on attractant odorants. In our study, we tested Pacific lamprey response to …

A New Laelapine Mite (Acari: Mesostigmata: Laelapidae) Associated With The Spiny Rodent, Scolomys Melanops, In Amazonian Peru, Donald Gettinger, Scott L. Gardner

Scott L. Gardner Publications

Gigantolaelaps scolomys Gettinger and Gardner n. sp., an ectoparasitic mite (Acari: Laelapidae) associated with the rodent Scolomys melanops in Amazonian forests of Peru, is described and illustrated.

Mites of the genus Gigantolaelaps Fonseca are common ectoparasites associated exclusively with rodents of the sigmodontine tribe Oryzomyini (see Gettinger, 1987). They are often abundant in the dorsal pelage and are easily collected by brushing the host at capture. The laelapine populations sampled are female dominant; males and immatures are assumed to live within the nest of the host (Martins-Hatano et al., 2011). A new species was encountered in a small collection of …

First Report Of The Herb Field Mouse, Apodemus Uralensis (Pallas, 1811) From Mongolia, Setev Shar, Nyamsuren Batsaikhan, Dietrich Dolch, Scott Gardner, Ottmar Kullmer, V. S. Lebedev, Davaa Lkhagvasuren, Ulrike Menz, Ravchig Samiya, Michael Stubbe, Нermann Ansorge

Scott L. Gardner Publications

The herb field mouse, Apodemus uralensis (Pallas, 1811) is recorded for the first time in Mongolia, from western part of the Mongolian Altai and the adjacent Mongolian part of the Dzungarian Gobi. In addition, we discovered several additional fi ndings of this species recorded as early as 1976 from different scientific collections. Body and skull measurements are presented along with a molecular genetic analysis of one specimen.

Effects Of Proline And Glycine On The Cnidocyte Discharge Of Hydra Magnipapillata, Janine R. Appleton

Honors Theses and Capstones

The sense of taste enables animals to utilize environmental cues to detect favorable foods. Through specialized sensory receptors, Cnidarians employ stinging cells called cnidocytes to perform a variety of activities such as locomotion, capturing prey, inducing of feeding responses, and defense. Their discharge is highly regulated by mechanical and chemical signals that are mediated by a complex system including the opsin and taste pathways. Taste 1 Receptors (T1R) have previously been isolated in vertebrates but only until recently, have been noted in invertebrates. Receptors specific to L- amino acids corresponding to the taste sensation of umami, were studied to determine …

Systematics Of The African River Frog Genus Amietia (Anura: Pyxicephalidae) From Eastern Democratic Republic Of The Congo, Thornton Robert Larson

Open Access Theses & Dissertations

The African river frog genus Amietia is found near rivers and other lentic water sources throughout central, eastern and southern Africa. Because the genus includes multiple morphologically conservative species, taxonomic studies of river frogs have been limited. We sampled 49 individuals of Amietia from multiple localities in and near the Albertine Rift (AR) of Burundi, Democratic Republic of the Congo and Uganda. We utilized single-gene (16S) and concatenated (12S, 16S, cytochrome b and RAG1) gene-tree analyses and coalescent species-tree analyses to construct phylogenetic trees. Two divergence dating approaches were used in BEAST, including secondary calibration points with 12S, 16S and …