Ornithology Commons^™

Multi-Sensor Tracking Reveals The Extent Of Nocturnal Migration In Landbirds, Paul Dufour, Raphaël Nussbaumer, Paul Doniol-Valcroze, Yann Rime, Peter Adamík, Susanne Åkesson, Raphaël Arlettaz, Arnaud G. Barras, Nyambayar Batbayar, Andrea Contina

School of Integrative Biological & Chemical Sciences Faculty Publications

Most bird species are diurnal but drastically change their diel cycle of activity to migrate at night. Nocturnal migration has been documented using different methods (e.g., experiments, radar and radio tracking, and acoustic monitoring), but accurately quantifying the proportion of nocturnal versus diurnal flight at the individual and species levels, and understanding how this behavior evolved across the avian tree, has remained methodologically challenging.1,2,3 Such uncertainty is not only of theoretical importance but also limits our ability to mitigate conservation threats, particularly from light pollution and building collisions.4,5,6 With multi-sensor …

Linking North American Demographic Trends To Mexican Non-Breeding Grounds In A Migratory Warbler, Majuwana Gamage Dulanthi Dileka Kariyawasam

Theses and Dissertations

Migration enables species to exploit seasonal resources despite high energetic costs and mortality risks, making it a key focus for conservation under environmental change. I investigated migratory connectivity in Orange-crowned Warblers using stable hydrogen isotopes (δ²H) from feathers collected at nine non-breeding sites across Mexico. Results indicated generally weak connectivity (MC = 0.18), with most sites hosting individuals from six breeding clusters across Canada and the United States. However, one northwestern breeding group showed strong connectivity, suggesting crosswise migration to eastern Mexico. By integrating these findings with long-term Breeding Bird Survey data, I detected contrasting population trends, with Pacific Coast …

Dynamic Environments Generate Geographic Fluctuations In Population Structure Of An Inland Shorebird, Andrea Contina, Scott W. Yanco, Allison K. Pierce, Hannah B. Vander Zanden, Craig A. Stricker, Gabriel J. Bowen, Michael B. Wunder

School of Integrative Biological & Chemical Sciences Faculty Publications

Species distributions depend on fine-scale ecological processes and population growth trajectories and are influenced by climate and weather changes. However, the characterization of inter-population dynamics underlying the geographic distributions of migratory organisms remains challenging. We adopted a stable isotope approach to investigate the dynamic population geography of a terrestrial migratory bird across multiple generations. We found that the age-specific geographic source of Mountain Plovers sampled during winter shifted over four years across a latitudinal gradient. Moreover, our results show that differential effects of climate on the probability of occurrence at the wintering ground could be a driver of population turnover …

A Comparative Study Of Urban And Natural Nesting Gray Hawks In The Lower Rio Grande Valley Of South Texas, Evan Farese

Theses and Dissertations

Urbanization can negatively impact birds of prey, which occupy higher trophic levels. The Gray Hawk (Buteo plagiatus) is a neotropical raptor inhabiting the Lower Rio Grande Valley (LRGV) of Texas, where it is threatened. The species’ ecology has been little studied and it is unclear how urbanization may affect population viability. I studied Gray Hawk reproductive success, diet, and thermal ecology at nests in urban and natural habitats in the LRGV. Camera trap data showed adults at urban nests delivered mostly avian prey, while mammalian prey was most frequently brought to natural nests. Data from temperature loggers showed …

Challenges And Opportunities For Data Integration To Improve Estimation Of Migratory Connectivity, Jeffrey A. Hostetler, Emily B. Cohen, Christen M. Bossu, Amy L. Scarpignato, Kristen Ruegg, Andrea Contina, Clark S. Rushing, Michael T. Hallworth

School of Integrative Biological & Chemical Sciences Faculty Publications

1. Understanding migratory connectivity, or the linkage of populations between seasons, is critical for effective conservation and management of migratory wildlife. A growing number of tools are available for understanding where migratory individuals and populations occur throughout the annual cycle. Integration of the diverse measures of migratory movements can help elucidate migratory connectivity patterns with methodology that accounts for differences in sampling design, directionality, effort, precision and bias inherent to each data type.
2. The R package MigConnectivity was developed to estimate population-specific connectivity and the range-wide strength of those connections. New functions allow users to integrate intrinsic markers, tracking and long-distance …

Biosense: An Automated Sensing Node For Organismal And Environmental Biology, Andrea Contina, Eric Abelson, Brendan Allison, Brian Stokes, Kenedy F. Sanchez, Henry M. Hernandez, Anna M. Kepple, Quynhmai Tran, Isabella Kazen

School of Integrative Biological & Chemical Sciences Faculty Publications

Automated remote sensing has revolutionized the fields of wildlife ecology and environmental science. Yet, a cost-effective and flexible approach for large scale monitoring has not been fully developed, resulting in a limited collection of high-resolution data. Here, we describe BioSense, a low-cost and fully programmable automated sensing platform for applications in bioacoustics and environmental studies. Our design offers customization and flexibility to address a broad array of research goals and field conditions. Each BioSense is programmed through an integrated Raspberry Pi computer board and designed to collect and analyze avian vocalizations while simultaneously collecting temperature, humidity, and soil moisture data. …

Understanding The Influence Of Traffic And Noise On The Wildlife Community Surrounding Fm106 And Sh100 In South Texas, Anna Rose Mehner

Theses and Dissertations

In South Texas, highways create landscape fragmentation, habitat degradation, and result in wildlife vehicle collisions. Vehicle collisions are the highest known cause of mortality of the endangered ocelot (Leopardus pardalis), which led Texas Department of Transportation to install nine wildlife crossing structures (WCS) on Farm-to-Market 106 and five on State Highway 100. These highways are along Laguna Atascosa National Wildlife Refuge, which is the location of the southernmost breeding population of ocelots in the United States. Many other wildlife species including bobcat (Lynx rufus) and coyote (Canis latrans), are present along these highways and …

Semiautomated Generation Of Species-Specific Training Data From Large, Unlabeled Acoustic Datasets For Deep Supervised Birdsong Isolation, Justin Sasek, Brendan Allison, Andrea Contina, David Knobles, Preston Wilson, Timothy Keitt

School of Integrative Biological & Chemical Sciences Faculty Publications

Background

Bioacoustic monitoring is an effective and minimally invasive method to study wildlife ecology. However, even the state-of-the-art techniques for analyzing birdsongs decrease in accuracy in the presence of extraneous signals such as anthropogenic noise and vocalizations of non-target species. Deep supervised source separation (DSSS) algorithms have been shown to effectively separate mixtures of animal vocalizations. However, in practice, recording sites also have site-specific variations and unique background audio that need to be removed, warranting the need for site-specific data.

Methods

Here, we test the potential of training DSSS models on site-specific bird vocalizations and background audio. We used a …

Asynchronous Movement Patterns Between Breeding And Stopover Locations In A Long-Distance Migratory Songbird, Theodore J. Zenzal Jr., Andrea Contina, Hannah B. Vander Zanden, Leanne K. Kuwahara, Daniel C. Allen, Kristen M. Covino

School of Integrative Biological & Chemical Sciences Faculty Publications

The species-specific migratory patterns and strategies of many songbirds remain unknown or understudied, as research in animal ecology is biased toward the breeding period, with the fewest studies on the migratory period across taxa. Identifying large-scale spatiotemporal migratory patterns is challenging, as individuals within a species may vary in their migratory behavior and strategies. The Yellow Warbler (Setophaga petechia) is a Nearctic-Neotropical migrant that is relatively well studied during the breeding season, but its species-wide migratory patterns remain understudied. Our aim in studying Yellow Warbler movement ecology was to characterize temporal migration patterns during fall migration. We sought …

Eviction-Driven Infanticide And Sexually Selected Adoption And Infanticide In A Neotropical Parrot, Steven R. Beissinger, Karl S. Berg

School of Integrative Biological & Chemical Sciences Faculty Publications

Significance

Infanticide and adoption are puzzling forms of sexual conflict and cooperation, respectively. However, both may be explained by sexual selection, where an individual later reproduces with the parent whose offspring it killed or adopted. While sexually selected infanticide is well known, evidence for sexually selected adoption is anecdotal. Our long-term study of a parrotlet in Venezuela found infanticide attacks were mostly enacted by nonbreeding pairs attempting to evict parents from their nests to usurp the cavity. Infanticide attacks occurred less often at nests where a parent died, and adoption by stepparents was as common as infanticide. Becoming an adoptive …

Habitat Use And Winter Site Fidelity Of Lincoln’S Sparrow (Melospiza Lincolnii) In The Lower Rio Grande Valley Of Texas, Timothy Brush, Hugh E. Conway, Catherine C. Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

The Strength Of Migratory Connectivity In Painted Buntings Is Spatial Scale Dependent And Shaped By Molting Behavior, Andrew J. Sharp, Andrea Contina, Viviana Ruiz-Gutiérrez,, T. Scott Sillett, Eli S. Bridge, Elizabeth M. Besozzi, John A. Muller, Jeffrey Kelly, Aaron M. Given, Clark S. Rushing

School of Integrative Biological & Chemical Sciences Faculty Publications

As migratory species move through the stages of their annual cycle, individuals often display variation in the degree to which they remain in proximity to one another, a phenomenon called migratory connectivity. We show scale dependence in the strength of migratory connectivity in Painted Buntings (Passerina ciris), a North American passerine with disjunct eastern and interior breeding populations. Based on light-level geolocator data from 112 individuals at 11 breeding sites, migratory connectivity between breeding and wintering grounds was strong at the range-wide scale, with interior and eastern Painted Buntings remaining separated throughout the annual cycle. Conversely, migratory connectivity …

Winter Connectivity And Leapfrog Migration In A Migratory Passerine, Rafael Rueda‐Hernández, Christen M. Bossu, Thomas B. Smith, Andrea Contina, Ricardo Canales Del Castillo, Kristen Ruegg, Blanca E. Hernández-Baños

School of Integrative Biological & Chemical Sciences Faculty Publications

Technological advances in migratory tracking tools have revealed a remarkable diversity in migratory patterns. One such pattern is leapfrog migration, where individuals that breed further north migrate to locations further south. Here, we analyzed migration patterns in the Painted Bunting (Passerina ciris) using a genetic‐based approach. We started by mapping patterns of genetic variation across geographic space (called a genoscape) using 386 individuals from 25 populations across the breeding range. We then genotyped an additional 230 samples from 31 migration stopover locations and 178 samples from 16 wintering locations to map patterns of migratory connectivity. Our analyses of …

Genetic And Ecological Drivers Of Molt In A Migratory Bird, Andrea Contina, Christen M. Bossu, Daniel Allen, Michael B. Wunder, Kristen Ruegg

School of Integrative Biological & Chemical Sciences Faculty Publications

The ability of animals to sync the timing and location of molting (the replacement of hair, skin, exoskeletons or feathers) with peaks in resource availability has important implications for their ecology and evolution. In migratory birds, the timing and location of pre-migratory feather molting, a period when feathers are shed and replaced with newer, more aerodynamic feathers, can vary within and between species. While hypotheses to explain the evolution of intraspecific variation in the timing and location of molt have been proposed, little is known about the genetic basis of this trait or the specific environmental drivers that may result …

Application Of Stable Isotopes To Study Movement Ecology And Diet Variation In A Migratory Songbird, Andrea Contina, Allison K. Pierce, Scott W. Yanco, Eli S. Bridge, Jeffrey F. Kelly, Michael B. Wunder

School of Integrative Biological & Chemical Sciences Faculty Publications

Whether and how migratory organisms exhibit interindividual behavioral and/or physiological variation across movement strategies remains an open question. The Dark-eyed Junco (Junco hyemalis) is a migratory songbird known for its intraspecies variation displayed in relation to morphology, song repertoires, and migration. Thus, studies focusing on juncos can reveal how migratory strategy may covary with other individual-scale factors and, therefore, identify the selective forces driving intraspecies variations throughout its distribution. We used Dark-eyed Junco hydrogen stable isotope feather values (δ²H) and implemented a Bayesian framework to infer the breeding and molting origin of migratory juncos captured on their winter grounds in …

Habitat Loss Exacerbates Pathogen Spread: An Agent-Based Model Of Avian Influenza Infection In Migratory Waterfowl, Shenglai Yin, Yanjie Xu, Mingshuai Xu, Mart C M De Jong, Mees Rs Huisman, Andrea Contina, Herbert H T Prins, Zheng Y X Huang, Willem F. De Boer

School of Integrative Biological & Chemical Sciences Faculty Publications

Habitat availability determines the distribution of migratory waterfowl along their flyway, which further influences the transmission and spatial spread of avian influenza viruses (AIVs). The extensive habitat loss in the East Asian-Australasian Flyway (EAAF) may have potentially altered the virus spread and transmission, but those consequences are rarely studied. We constructed 6 fall migration networks that differed in their level of habitat loss, wherein an increase in habitat loss resulted in smaller networks with fewer sites and links. We integrated an agent-based model and a susceptible-infected-recovered model to simulate waterfowl migration and AIV transmission. We found that extensive habitat loss …

Effects Of Soil Shrink-Swell On Bird Bones: An Experimental Taphonomy Pilot Study, Frank J. Dirrigl Jr., Adriana Diaz, Reyna Chavez

School of Integrative Biological & Chemical Sciences Faculty Publications

The soil burial context of a bird bone assemblage is affected by many different taphonomic factors. In this pilot study, we examined the potential effects of soil shrink-swell on white-tailed dove (Zenaida asiatica) bones experimentally buried in three soils of different clay contents. We predicted that bones buried in high clay soils would experience the most damage from soil shrink-swell. Dove wing and leg bones were buried and exposed to 60 days and eight episodes of cyclic soil shrink-swell. We recovered all bones (humeri, ulnae, radii, femora, and tibiotarsi) and found 77.1% of them to exhibit damage. …

A Tail Of Plumage Colouration: Disentangling Geographic, Seasonal And Dietary Effects On Plumage Colour In A Migratory Songbird, Sean M. Mahoney, Matthew W. Reudink, Andrea Contina, Kelly A. Roberts, Veronica T. Schabert, Emily G. Gunther, Kristen M. Covino

School of Integrative Biological & Chemical Sciences Faculty Publications

Plumage ornamentation in birds serves critical inter- and intra-sexual signaling functions. While carotenoid-based plumage colouration is often viewed as a classic condition-dependent sexually selected trait, plumage colouration can be influenced by a wide array of both intrinsic and extrinsic factors. Understanding the mechanisms underlying variation in colouration is especially important for species where the signaling function of ornamental traits is complex or when the literature is conflicting. Here, we examined variation in the yellow/orange tail feathers of American redstarts Setophaga ruticilla passing through two migratory stopover sites in eastern North America during both spring and fall migration to assess the …

Filling The Gap: Molting Behavior Of Colima Warblers And Research Opportunities For Understudied North American Songbirds, Benjamin Gochanour, Jose L. Alcantara, Paula Cimprich, Jeffrey F. Kelly, Andrea Contina

School of Integrative Biological & Chemical Sciences Faculty Publications

We implemented stable isotope analysis to evaluate the molt behavior of the Colima warbler (Leiothlypis crissalis), an understudied migratory songbird occurring in Mexico and recently discovered breeding in the southern part of Texas, USA. We built a geostatistical model showing variation in deuterium precipitation values (d2Hp) across a latitudinal gradient within the Colima warbler breeding range in northeastern Mexico. Then, based on stable isotope ratios of deuterium in feathers (d2Hf), we assigned wintering Colima warblers captured in Central Mexico to possible molting areas near the southwestern portion of the species' breeding range. To the best of our knowledge, this is …

Duet Phonology And Syntax Of The Red-Crowned Parrots In South Texas, Abigail Pozulp

Theses and Dissertations

Bird behavioral interaction systems show a preference for temporal precision. This preference is exemplified in the way many species avoid masking of vocal signals. Antiphonal duetting in songbirds suggest that overlapping notes are a sign of poor temporal coordination which can signify a weak pairbond, a possible cue for conspecifics seeking to usurp territories or mates. However, parrots (Psittacidae) are accomplished yet understudied duetters in nature. I recorded antiphonal duets produced by a wild population of red-crowned parrots (Amazona viridigenalis) in Brownsville, Texas. Temporal and acoustic variation of signals was assessed within and across a sample of mated …

Home Range Dynamics And Juvenile Dispersal Of Gray Hawks In The Lower Rio Grande Valley, Michael Stewart

Theses and Dissertations

Using GPS-GSM transmitters I determined when 14 juvenile Gray Hawks (Buteo plagiatus) in the Lower Rio Grande Valley of Texas fledged from their natal areas and how far they traveled once they dispersed. These transmitters also allowed me to calculate home range sizes for 22 adults. Additionally, with the GPS-GSM transmitters and 15 VHF transmitters, I discovered that adult Gray Hawks in the study area remained in their territories year-round. Home range sizes were calculated using the minimum convex polygon estimator, the estimation of kernel home-range, and the estimation of kernel Brownian bridge home-range. The same three methods allowed me …

Effects Of Early Corticosterone Treatment On Vocal Babbling In Wild Green-Rumped Parrotlets (Forpus Passerinus), Celia Rose Mclean

Theses and Dissertations

The stress axis of the endocrine system allows for animals to respond to environmental stressors in contextually appropriate ways. Elevated levels of the stress hormone corticosterone (CORT) in male songbirds can result in compromised song learning ability. Parrots form a sister group to songbirds, but it is unknown whether CORT affects vocal development in parrots. The goal of this study was to assess the effects of CORT supplements in green-rumped parrotlets (Forpus passerinus), a free-ranging parrot species in Venezuela. Bouts of vocal babbling were extracted from nest box videos and analyzed. CORT supplementation resulted in differences in babbling …

Organizational Effects Of Exogenous Corticosterone On Vocal Development In A Wild Parrot, Rory Eggleston

Theses and Dissertations

Songbirds learn songs during a plastic phase in vocal development, similar to human vocal babbling. Research has focused on male song learning, a process influenced by gonadal steroids. Like humans, parrots are very plastic vocal learners and both sexes learn vocalizations throughout life. It is unclear how the endocrine system mediates environmental information with developing phenotypes in parrots. Corticosterone (CORT) is a sex-neutral hormone that can affect cognitive development, but its role in vocal development has not been experimentally tested in wild parrots. I quantified vocal babbling from nestling Green-rumped Parrotlets (Forpus passerinus) recorded in Venezuela. Nestlings received oral CORT-oil …

Social Influences On Vocal Development In A Wild Parrot, Caleb Michael Mand Arellano

Theses and Dissertations

The Social Intelligence Hypothesis (SIH) proposes that navigating complex societies requires increased neural processing to monitor shifting relationships. SIH evolutionary focus of brain size variation in adults originally ignored the developmental frameworks leading to increased sociality. I studied the ontogeny of early sibling interactions in wild Green‐rumped Parrotlets (Forpus passerinus) in a Venezuelan population that exhibited large variation in brood size and engaged in elaborate social interactions and complex social learning during nestling development. To test if nests of varying brood sizes exhibit differences in social complexity, I quantified the number and strength of sibling play partnerships, as a proxy …

Genetic Structure Of The Painted Bunting And Its Implications For Conservation Of Migratory Populations, Andrea Contina, Jose L. Alcantara, Eli S. Bridge, Jeremy D. Ross, William F. Oakley, Jeffrey F. Kelly, Kristen Ruegg

School of Integrative Biological & Chemical Sciences Faculty Publications

The Painted Bunting Passerina ciris is a Neotropical songbird which breeds primarily in the USA during the summer and migrates to Mexico, Central America, southern Florida and the Caribbean over the winter. Male Painted Buntings are brightly coloured, which makes them highly sought after as pets, particularly in Mexico, Central America and Europe. We used short sequence repeats (microsatellite DNA) to investigate the population genetic structure of the Painted Bunting and its implications in conservation management of migratory populations. We found a detectable level of population differentiation as revealed by pairwise FST and RST comparisons and Bayesian clustering …

Impacts Of Habitat Attributes And Community Gardens On Urban Bird Communities, Samuel Glenn Ortiz

Theses and Dissertations

The Rio Grande Valley of Southern Texas is a major agricultural region yet has some of the highest hunger rates in the USA. Urbanization and agriculture affect biodiversity, which is well studied, but little is known about how agriculture affects biodiversity in urban areas. We investigated how different urban attributes, including those related to urban farming, impact bird communities in Brownsville and Harlingen, TX, and compared sites that have community gardens to those that do not. To study three key urban habitat characteristics, we identified sites that exhibited all possible combinations of these factors, quantified land cover classes related to …

Varying Dataset Resolution Alters Predictive Accuracy Of Spatially Explicit Ensemble Models For Avian Species Distribution, Claire M. Curry, Jeremy D. Ross, Andrea Contina, Eli S. Bridge

School of Integrative Biological & Chemical Sciences Faculty Publications

Species distribution models can be made more accurate by use of new “Spatiotemporal Exploratory Models” (STEMs), a type of spatially explicit ensemble model (SEEM) developed at the continental scale that averages regional models pixel by pixel. Although SEEMs can generate more accurate predictions of species distributions, they are computationally expensive. We compared the accuracies of each model for 11 grassland bird species and examined whether they improve accuracy at a statewide scale for fine and coarse predictor resolutions. We used a combination of survey data and citizen science data for 11 grassland bird species in Oklahoma to test a spatially …

Winter Site Fidelity Of Orange-Crowned Warblers (Oreothlypis Celata) In The Lower Rio Grande Valley Of Texas, Mark H. Conway, Timothy Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Abstract—We documented between-winter site fidelity of orange-crowned warblers (Oreothlypis celata) in the Lower Rio Grande Valley of Texas, between 2004 and 2017. Overall, we recaptured 13.9% of the 201 banded birds in ‡1 subsequent winter season: 20.8% of the 101 birds banded in urban natural areas, and 7.0% of the 100 banded in rural areas. We recaptured 8 birds ‡3 winters after their initial capture, indicating extended winter site fidelity.

Resumen—Documentamos la fidelidad al sitio invernal de los chipes olivaceos (Oreothlypis celata) en el Valle del R´ıo Grande Baja de Texas entre 2004 y 2017. En general, se …

Examination Of Clock And Adcyap1 Gene Variation In A Neotropical Migratory Passerine, Andrea Contina, Eli S. Bridge, Jeremy D. Ross, J. Ryan Shipley, Jeffrey F. Kelly

School of Integrative Biological & Chemical Sciences Faculty Publications

Complex behavioral traits, such as those making up a migratory phenotype, are regulated by multiple environmental factors and multiple genes. We investigated possible relationships between microsatellite variation at two candidate genes implicated in the control of migratory behavior, Clock and Adcyap1, and several aspects of migratory life-history and evolutionary divergence in the Painted Bunting (Passerina ciris), a species that shows wide variation in migratory and molting strategies across a disjunct distribution. We focused on Clock and Adcyap1 microsatellite variation across three Painted Bunting populations in Oklahoma, Louisiana, and North Carolina, and for the Oklahoma breeding population we …

Temporal Migration Patterns Between Natal Locations Of Ruby-Throated Hummingbirds (Archilochus Colubris) And Their Gulf Coast Stopover Site, Theodore J. Zenzal Jr., Andrea Contina, Jeffrey F. Kelly, Frank R. Moore

School of Integrative Biological & Chemical Sciences Faculty Publications

Background

Autumn latitudinal migrations generally exhibit one of two different temporal migration patterns: type 1 where southern populations migrate south before northern populations, or type 2 where northern populations overtake southern populations en route. The ruby-throated hummingbird (Archilochus colubris) is a species with an expansive breeding range, which allows opportunities to examine variation in the timing of migration. Our objective was to determine a relationship between natal origin of ruby-throated hummingbirds and arrival at a Gulf coast stopover site; and if so, what factors, such as differences in body size across the range as well as the …