Aquaculture and Fisheries Commons^™

Variability In The Spatial And Temporal Patterns Of Larval Scombrid Abundance In The Gulf Of Mexico, Sennai Y. Habtes

USF Tampa Graduate Theses and Dissertations

Accurate fishery-independent methods for assessing the abundance of marine fish stocks are important tools for proper pelagic fisheries management. The review and improvement of standardized sampling methods used in fisheries-independent sampling, and the establishment of improved models of abundance and population dynamics utilizing novel statistical techniques for fisheries management will further improve our understanding of the way in which marine fish stocks vary spatially and temporally. One of the most important and longest running surveys of fisheries-independent data in the Southeastern United States is the spring ichthyoplankton survey conducted through the Southeast Area Mapping and Assessment Program (SEAMAP).

These surveys …

Performance Of A Temperate-Zone Channel Catfish Biofloc Technology Production System During Winter, Bartholomew W. Green

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Channel catfish (Ictalurus punctatus) have been grown successfully in an outdoor biofloc technology production system. Outdoor biofloc production systems in the tropic sare operated year-round, whereas the channel catfish studies were conducted only during the growing season and biofloc production tanks were harvested and idled for the winter. If an outdoor biofloc production system is to be adopted by farmers at temperate latitudes, then data gaps related to system and fish performance over the winter must be addressed. The present study was conducted to address these data gaps for channel catfish culture. Waters from a recently completed biofloc …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Assessing The Ecological Impact Of The Western Rock Lobster Fishery In Fished And Unfished Areas Final Frdc Report – Project 2008/013, Lynda B. Bellchambers, Matthew B. Pember

Fisheries Research Reports

This project, in consultation with an industry working group, has been instrumental in establishing a closed area in the western rock lobster fishery to assess the potential ecosystem effects of removing lobster biomass from deep water (40-100 m). The major outcome of this research is an improved understanding of the ecosystem that supports the western rock lobster. These types of information for improve the Department of Fisheries’ ability to manage the fishery in an ecosystem based manner and provide scientifically defensible data to more precisely assess the level of risk of the fishery to deep water communities. In early 2013, …

Shark Bay Prawn Managed Fishery : Bycatch Action Plan : 2014 – 2019 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Fisheries Management Paper No.266 - Exmouth Gulf Prawn Managed Fishery Bycatch Action Plan 2014-2019. Version 1.0, Department Of Fisheries, Western Australia

Fisheries Management Papers

Bycatch is described as the part of the catch which is returned to the sea (usually referred to as non-retained or discarded) either because it has no commercial value or because legislative requirements preclude it being retained. Thus, this Bycatch Action Plan (BAP) includes unmarketable finfish and invertebrate species, along with endangered, threatened and protected (ETP) species, such as marine mammals, reptiles and some elasmobranchs.

It is Government policy to minimise bycatch in all commercial fisheries. This BAP details a program of actions to address bycatch issues in the Exmouth Gulf Prawn Managed Fishery (EGPMF), in accordance with the EGPMF …

Fisheries Management Paper No.265 - Exmouth Gulf Prawn Managed Fishery Harvest Strategy 2014 - 2019 Version 1.0, Department Of Fisheries Western Australia

Fisheries Management Papers

This fishery-specific harvest strategy has been developed in line with the Department of Fisheries' (Department) over-arching Harvest Strategy Policy for Aquatic Resources (Department of Fisheries in prep.) and in consultation with licensees. The broad scope of the Harvest Strategy Policy for Aquatic Resources is consistent with the National Harvest Strategy Guidelines but as well as considering all retained target species, it also incorporates retained non-target species, bycatch' and other ecological components to ensure the risks to these elements are managed effectively.

The Exmouth Gulf Prawn Managed Fishery (EGPMF) harvest strategy outlines the longand short-term fishery-specific management objectives; a description of …

Phylogenetic Analysis Of Algal Symbionts Associated With Four North American Amphibian Egg Masses, Eunsoo Kim, Yuan Lin, Ryan R. Kerney, Lili Blumenberg, Cory Bishop

Biology Faculty Publications

Egg masses of the yellow-spotted salamander Ambystoma maculatum form an association with the green alga “Oophila amblystomatis” (Lambert ex Wille), which, in addition to growing within individual egg capsules, has recently been reported to invade embryonic tissues and cells. The binomial O. amblystomatis refers to the algae that occur in A. maculatum egg capsules, but it is unknown whether this population of symbionts constitutes one or several different algal taxa. Moreover, it is unknown whether egg masses across the geographic range of A. maculatum, or other amphibians, associate with one or multiple algal taxa. To address these …

Hydrolyzed Tuna Meat By-Product Supplement For Juvenile Red Sea Bream, Pagrus Major, And Its Effect On Growth, Enzyme Activity, Plasma Parameters, And Apparent Nutrient Digestibility, Janice A. Ragaza, Roger Edward P. Mamauag, Shunsuke Koshio, Manabu Ishikawa, Saichiro Yokoyama

Biology Faculty Publications

A growth experiment was conducted on juvenile red sea bream, Pagrus major to investigate the effect of the inclusion in fish diets, of tuna meat by-product hydrolysate which was processed through enzymatic hydrolysis using a commercially available enzyme, derived from Bacillus subtilis. Six experimental diets were formulated in the experiment. Three diets contained 50, 150 and 250 g/kg of TPM-H (tuna meat by-product hydrolysate), and two diets with the unprocessed TPM (tuna meat by-product) at an inclusion level of 50 and 250 g/kg. A control diet was formulated without any addition of the test ingredients. Treatment diets were fed ad …

Species Identification And Phylogeny Of Phycinae Hakes And Related Gadoid Fishes, Laura Ann Whitefleet-Smith

All Theses And Dissertations

The term hake refers to a number of species belonging to multiple families of fish in the suborder Gadoidei and includes two main groups: Phycinae hakes (family Gadidae) and Merluccius spp. hakes (family Merlucciidae). The use of the common name hake for this diverse group of fish prompts questions such as: how are these species related and how can they be differentiated? Chapter one details the development of the Rapid Gadoid Identification Assay (RaGIA) for molecular identification of 11 gadoid fishes (including six hakes) using Polymerase Chain Reaction Restriction Fragment Length Polymorphism (PCR-RFLP). RaGIA was used for species identification of …

Over 75 Years Of Zooplankton Data From Australia, Claire H. Davies, Amelia J. Armstrong, Mark Baird, Frank Coman, Steven Edgar, Daniel J. Gaughan, Jack Greenwood, Felipe Gusmao, Natasha Henschke, J. Anthony Koslow, Sophie C. Leterme, A. David Mckinnon, Margaret Miller, Sarah Pausina, Julian Uribe Palomino, Ruben-Lee Roennfeldt, Peter Rothlisberg, Anita Slotwinski, Joanna Strzelecki, Iain M. Suthers, Kerrie M. Swadling, Sam Talbot, Mark Tonks, David H. Tranter, Jock W. Young, Anthony J. Richardson

Fisheries Research Articles

Zooplankton are the key trophic link between primary producers and fish in pelagic ecosystems. Historically, there are few zooplankton time series in Australia, with no data sets longer than two years prior to 2008. Here we compile 98 676 abundance records of more than 1000 zooplankton taxa from unpublished research cruises, student projects, published literature, and the recent Integrated Marine Observing System (IMOS). This data set covers the entire coastal and shelf region of Australia and dates back to 1938. Most records are for copepods, but there are also data for other taxa such as decapods, chaetognaths, thaliaceans, appendicularians, and …

Spatiotemporal Variation In Flow-Dependent Recruitment Of Long-Lived Riverine Fish: Model Development And Evaluation, Daisuke Goto, Martin J. Hamel, Jeremy J. Hammen, Mathew L. Rugg, Mark A. Pegg, Valery E. Forbes

School of Biological Sciences: Faculty Publications

Abstract Natural flow regimes can play a major role as an overarching ecosystem driver in reproduction and recruitment of riverine fishes. Human needs for freshwater however have altered hydrology of many riverine systems worldwide, threatening fish population sustainability. To understand and predict how spatiotemporal dynamics of flow regimes influence reproductive and recruitment variability, and ultimately population sustainability of shovelnose sturgeon (Scaphirhynchus platorynchus), we develop a spatially explicit (1D) individual-based population model that mechanistically (via energetics-based processes) simulates daily activities (dispersal, spawning, foraging, growth, and survival). With field observations of sturgeon and habitat conditions in a major tributary of …

The Status Of Fishes In The Missouri River, Nebraska: Lake Sturgeon (Acipenser Fulvescens), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Lake Sturgeon (Acipenser fulvescens) occurrences in the Missouri River along Nebraska’s eastern border are historically sporadic and rare. Presently, the wild Lake Sturgeon population in this river reach may be extirpated. A Recovery Program initiated by the Missouri Department of Conservation (MDC) has stocked almost 150,000 hatchery-reared Lake Sturgeon into the lower Missouri River at several sites in Missouri. As a result, the number of Lake Sturgeon collected has increased. Since monitoring began in 2003, no Lake Sturgeon have been collected above Gavins Point Dam while 40 fish were collected downstream of Gavins Point Dam. The majority of …

Response Surface Optimization Of Microwave-Assisted Sulfated Polysaccharide Extraction From Porphyra Dentate, Yeu-Pyng Lin, Shao-Chi Wu, Jean-Yu Hwang

Journal of Marine Science and Technology–Taiwan

An experiment was performed by adjusting the pH value (4-10) of a 10%-to-90% ethanol solution (v/v) and using it as an extraction solvent and, subsequently, using microwaveassisted extraction (MAE) to extract Porphyra denate solutions. The sulfated polysaccharides (µg/mL) of these extraction solutions were evaluated. The optimal treatments of P. denate extracts obtained using MAE were studied using response surface methodology. The study was performed using a three-level, four-factor design and aimed to determine the optimal combinations of the ethanol concentration (10%-90%, v/v, X1), pH value of an ethanol solution (4-10, X2), microwave power level (200-400 W, X3), and heating time …

Historical Vegetation Of Three Salmon-Bearing Watersheds In The Interior Columbia River Basin, Tyanna Smith

PSU McNair Scholars Online Journal

Land use practices can be a contributing factor to environmental degradation and have been the focus of many ecological studies. One aspect that is less addressed is land use history and the effects that past practices, such as logging and grazing, can have on the current landscape. This paper describes research and the synthesis of material on the environmental history and watershed characteristics for three watersheds located within spawning and rearing areas for Chinook salmon in the Grande Ronde River Basin in Northeast Oregon: upper Grande Ronde River, Catherine Creek, and Minam River. The Grande Ronde Basin is critical spawning …

Fisheries Research Report No. 258 - Assessment Of Blue Swimmer Crab Recruitment And Breeding Stock Levels In The Peel-Harvey Estuary And Status Of The Mandurah To Bunbury Developing Crab Fishery, D Johnston, A Chandrapavan, B Wise, N Caputi

Fisheries Research Reports

Two projects were funded to investigate iconic blue swimmer crab stocks in the Peel-Harvey Estuary and Mandurah to Bunbury Developing Crab Fishery. One was a four year project (2007 – 2011) to undertake the following: i) determine recruitment and spawning stock levels of the crab population in the Peel-Harvey Estuary and whether the status of stocks has changed considerably in the past decade, ii) establish a commercial monitoring program to assess the length frequency and sex ratio of crabs captured by commercial fishers, and iii) develop a commercial monitoring program in the Mandurah to Bunbury Developing Crab Fishery and South …

Regulatory Capture, The Chesapeake Bay, And Hampton Roads: What's On Your Plate, Ronnie David Gannon

Institute for the Humanities Theses

The Chesapeake Bay and its 64,000 square mile watershed are both severely impacted from excessive amounts of nutrient pollution, which contributes to a growing presence of dead zones in the Bay. What causes nutrient pollution? What are dead zones? In addition, many of the Bay's commercially valuable species of marine life have been/ are overexploited to the point of collapse / verge of collapse. Despite all of these facts, management agencies continue to weakly enforce regulations. Why?

Not to mention, much of the Bay's marine life is unsustainably caught in the contaminated waters of Hampton Roads. How, and for what? …

Predictors Patterns And Processes Of Extinction Risk In Porgies And Seabreams (Family: Sparidae), Mia Theresa B. Conteros

Biological Sciences Theses & Dissertations

A variety of human-induced changes are having profound impacts on the marine environment, and no area on the planet remains unaffected by the detrimental effects of our activities. These stressors can potentially lead to synergistic effects, causing accelerated biodiversity loss and diminished ecosystem functioning. Identification and understanding of the factors that drive species to heightened risk of extinction are important goals in conservation.

The Sparidae are commercially important and ecologically complex marine fishes; global extinction risk assessments using the IUCN Red List of Threatened Species methodology show that 9% (13 species) have increased vulnerability to population declines from intense fishing …

Schooling Increases Risk Exposure For Fish Navigating Past Artificial Barriers, Bertrand H. Lemasson, James W. Haefner, Mark D. Bowen

Biology Faculty Publications

Artificial barriers have become ubiquitous features in freshwater ecosystems and they can significantly impact a region's biodiversity. Assessing the risk faced by fish forced to navigate their way around artificial barriers is largely based on assays of individual swimming behavior. However, social interactions can significantly influence fish movement patterns and alter their risk exposure. Using an experimental flume, we assessed the effects of social interactions on the amount of time required for juvenile palmetto bass (Morone chrysops × M. saxatilis) to navigate downstream past an artificial barrier. Fish were released either individually or in groups into the flume …

The Status Of Fishes In The Missouri River, Nebraska: Shovelnose Sturgeon (Scaphirhynchus Platorynchus), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Shovelnose Sturgeon Scaphirhynchus platorynchus remains the most abundant riverine sturgeon species in North American despite the anthropogenic modifications that have occurred throughout their historic range; however, their populations have declined throughout Nebraska since the construction of Fort Randall and Gavins Point Dams. Therefore, the objective of this study was to present the current status of Shovelnose Sturgeon in the Missouri River along Nebraska’s border. Data was acquired from 2003 to 2012 from all reaches of the Missouri River along Nebraska’s eastern border. Catch rates of Shovelnose Sturgeon increased in a downstream trend and were highest in the reach below …

The Status Of Fishes In The Missouri River, Nebraska: Pallid Sturgeon (Scaphirhynchus Albus), Kirk D. Steffensen, Dane A. Shuman, Robert A. Klumb, Sam Stukel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Anthropogenic alterations to the Missouri River have placed the Pallid Sturgeon (Scaphirhynchus albus) population in jeopardy and contributed to their listing as an endangered species. Pallid sturgeon were always less common than the sympatric Shovelnose Sturgeon (S. platorynchus); however, Pallid Sturgeon seemed to be more affected by river alterations as the river sturgeon ratio has become more skewed towards Shovelnose Sturgeon. Shortly after listing, population augmentation with hatchery produced Pallid Sturgeon began to supplement the diminishing wild population. Therefore, the objective of this study was to present the current population status of the Pallid Sturgeon in …

Effect Of Increased Water Temperature On Warm Water Fish Feeding Behavior And Habitat Use, Eric Walberg

Journal of Undergraduate Research at Minnesota State University, Mankato

Global warming could cause changes in species behavior and life history. Stream fish may be significantly affected by climate change because individuals are restricted in their movements by water systems and other physical factors, preventing migration to locations more thermally suitable. The effect of warmer waters on stream fish could change behavior and affect the fish species survival and ultimately ecosystem function. During my experiment I observed the effects of increased water temperature on the feeding behavior and habitat use of two native Minnesota fish species, black crappie (Pomoxis nigromaculatus) and black bullhead (Ameiurus melas). An increase of 2oC over …

Anti-Predator Responses Of Fathead Minnows To Alarm Substance Pheromone, Sarah Thomson

Journal of Undergraduate Research at Minnesota State University, Mankato

In some fish, alarm substances are released from skin cells when they are bitten by a predator, signaling nearby fish in potential danger. Such anti-predator defenses have been studied in the fathead minnow (Pimephales promelas), and some have hypothesized that the response to the alarm substance is not instinctual, but rather fish must learn to associate it with a predation cue such as motion. The purpose of this study is to detect an effect of conditioning (associating alarm substance with predation threat) on minnow responses to alarm substance. We tested the prediction that conditioned fish would react more strongly to …

Atrazine Influence On Northern Pike Sperm Motility And Viability In Minnesota, Andy Stevens, Paul Pallardy

Journal of Undergraduate Research at Minnesota State University, Mankato

Concern has been noted by fish hatchery biologists with the Department of Natural Resources that southern Minnesota northern pike Esox lucius populations have exhibited reduced hatching rates, a trend not occurring with northern Minnesota pike populations. The chemical atrazine is a frequently used herbicide in Minnesota and has been found to cause gonadal dysgenesis and reproductive development issues in amphibians and fish. Sperm, length, and age data were collected from northern pike in four Minnesota lakes. Water samples were obtained from two of the lakes to test for atrazine. Test results indicated atrazine concentrations0.10 and r2 < 0.06 for all regressions). Sperm motility reductions in northern pike could be related to declining populations and warrants further research.

Assessment Of Salmon Habitat On The Feather River, Nathan Sweem

STAR Program Research Presentations

Human activity in central valley streams has had a significantly negative impact on salmon habitat (Williams 2006). The presence of dams impedes sediment transport which is critical to salmon spawning (Williams 2006; Kondolf 1997). As part of an effort to enhance salmon spawning, the California Department of Water Resources added 7000 ft³ of gravel to Cottonwood Hatchery, Upper Auditorium, and Auditorium riffles on the Lower Feather River below the Thermalito Dam Complex in July of 2014. Stream conditions at Cottonwood Hatchery riffle were assessed by conducting analysis of sediment grain size, water depth and velocity, gravel permeability, and dissolved …

Aquaponics And Basil Plant Density, Danika L. Macmaster, Brook Murphy, Dudley Burton

STAR Program Research Presentations

Aquaponics is the use of water from a fish tank to provide nutrients to plants in a soil-less environment. The rocks cultivate the bacteria that turns the ammonia into nitrates that the plants need, and the plant bed functions as a filter for the fish tank. In this study, with the guidance of Doctor Dudley Burton, Doctor Brook Murphy, we researched the optimal plant density for basil in an Aquaponics system. We attempted to control or measure all the other variables to consider, as to isolate the variable of distance between plants. The water flow was spread through the plant …

Decision-Support Tools For Economic Optimization Of Western Rock Lobster Fishery, Nick Caputi, Simon De Lestang, Chris Reid, Sybrand A. Hesp, Jason How, Peter Stephenson

Fisheries Research Reports

Objectives: 1. To estimate the annual catch and effort to achieve optimum economic yield 2. To evaluate intra-annual market-based management strategies. 3. To evaluate the economic effect of current and proposed management changes.

Application Of A Bioenergetics Framework For Assessing Sub-Lethal Effects Of Pollutants In The Freshwater Mussel Elliptio Complanata, Christopher G. Goodchild

All Theses And Dissertations

Although biomarkers are frequently used to assess sublethal effects of contaminants, a lack of mechanistic linkages to higher-level effects limits the predictive power of biomarkers. Bioenergetics has been proposed as a framework for linking cellular effects to whole-animal effects. We investigated sublethal effects of exposure to wastewater treatment facility effluent in freshwater mussels in situ, thereby capturing ecologically relevant exposure conditions. Our study focused on the energetic biomarker AMP-activated protein kinase (AMPK), while also considering more traditional biomarkers like heat shock proteins (HSP70), and antioxidant enzymes (i.e., superoxide dismutase (SOD), glutathione-S-transferase (GST)). We examined biomarkers at mRNA and protein levels. …

South Atlantic Stream Fish Assemblages: Multi-Scale Structuring Factors, Trait Associations And Channelization, And Responses To Dam Removal, Cathy Marion

All Dissertations

South Atlantic coastal plain wadeable streams are unique and understudied freshwater environments that provide crucial habitats for a wide range of aquatic taxa. In Chapter 1, we investigated patterns in fish assemblages across South Carolina's coastal plain, and developed statistical models to identify the dominant multi-scale abiotic environmental factors that influence assemblage structure. Our analyses indicated the presence of four predominant fish assemblages that commonly occur in the coastal plain, which we termed the: 1) fluvial, 2) eastern mudminnow, 3) centrarchid, and 4) non-fluvial assemblages. Natural geographic gradients and instream habitat parameters associated with velocity, channel form, stream size, and …

Ontogenetic Diet Shifts And Prey Preference Of A Generalist Predatory Fish, Brittany Jalene Scharf

USF Tampa Graduate Theses and Dissertations

Marine ecosystems are highly dynamic and contain a diverse faunal assemblage that are subject to various natural and anthropogenic variability. Globally, seagrass ecosystems are located adjacent to coastal areas that are heavily impacted by human development and urbanization potentially altering the community structure within these ecosystem. Complex food webs connect many components of these systems, often in unexpected ways, and are ultimately based on one of two pathways: benthic (i.e., seagrass, epiphytes, microalgae, detritus) and planktonic (i.e., phytoplankton). Understanding the pathway which the food web is based gives further insight regarding the biological balance of the ecosystem; thus it is …