Aquaculture and Fisheries Commons^™

Quantifying Uncertainty And Trade-Offs In Resilience Assessments, Craig R. Allen, Hannah E. Birgé, David G. Angeler, Craig A. Arnold, Brian C. Chaffin, Daniel A. Decaro, Ahjond S. Garmestani, Lance Gunderson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Several frameworks have been developed to assess the resilience of social-ecological systems, but most require substantial data inputs, time, and technical expertise. Stakeholders and practitioners often lack the resources for such intensive efforts. Furthermore, most end with problem framing and fail to explicitly address trade-offs and uncertainty. To remedy this gap, we developed a rapid survey assessment that compares the relative resilience of social-ecological systems with respect to a number of resilience properties. This approach generates large amounts of information relative to stakeholder inputs. We targeted four stakeholder categories: government (policy, regulation, management), end users (farmers, ranchers, landowners, industry), agency/public …

A Method To Detect Discontinuities In Census Data, Chris Barichievy, David G. Angeler, Tarsha Eason, Ahjond S. Garmestani, Kirsty L. Nash, Craig A. Stow, Shana Sundstrom, Craig R. Allen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The distribution of pattern across scales has predictive power in the analysis of complex systems. Discontinuity approaches remain a fruitful avenue of research in the quest for quantitative measures of resilience because discontinuity analysis provides an objective means of identifying scales in complex systems and facilitates delineation of hierarchical patterns in processes, structure, and resources. However, current discontinuity methods have been considered too subjective, too complicated and opaque, or have become computationally obsolete; given the ubiquity of discontinuities in ecological and other complex systems, a simple and transparent method for detection is needed. In this study, we present a method …

Effects Of Large-Scale Wetland Loss On Network Connectivity Of The Rainwater Basin, Nebraska, Bram H. F. Verheijen, Dana M. Varner, David A. Haukos

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Context The Rainwater Basin region in south-central Nebraska supports a complex network of spatiallyisolated wetlands that harbor diverse floral and faunal communities. Since European settlement, many wetlands have been lost from the network, which has increased distances among remaining wetlands. As a result, populations of wildlife species with limited dispersal capabilities may have become isolated and face greater local extinction risks.

Objectives We compared the pre-European settlement and current extent of the Rainwater Basin network to assess the effects of wetland losses on network connectivity for a range of maximum dispersal distances.

Methods We constructed network models for a range …

Synchrony - An Emergent Property Of Recreational Fisheries, Mark A. Kaemingk, Christopher J. Chizinski, Keith L. Hurley, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

No abstract provided.

Bipartite Networks Improve Understanding Of Effects Of Waterbody Size And Angling Method On Angler–Fish Interactions, Christopher J . Chizinski, Dustin R. Martin, Daizaburo Shizuka, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Networks used to study interactions could provide insights to fisheries. We compiled data from 27 297 interviews of anglers across waterbodies that ranged in size from 1 to 12 113 ha. Catch rates of fish species among anglers grouped by species targeted generally differed between angling methods (bank or boat). We constructed angler–catch bipartite networks (angling method specific) between anglers and fish and measured several network metrics. There was considerable variation in networks among waterbodies, with multiple metrics influenced by waterbody size. Number of species-targeting angler groups and number of fish species caught increased with increasing waterbody size. Mean number …

Variation In Angler Distribution And Catch Rates Of Stocked Rainbow Trout In A Small Reservoir, Brian S. Harmon, Dustin R. Martin, Christopher J . Chizinski, K. L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

We investigated the spatial and temporal relationship of catch rates and angler party location for two days following a publicly announced put-and-take stocking of rainbow trout (Oncorhynchus mykiss). Catch rates declined with time since stocking and distance from stocking. We hypothesized that opportunity for high catch rates would cause anglers to fish near the stocking location and disperse with time, however distance between angler parties and stocking was highly variable at any given time. Spatially explicit differences in catch rates can affect fishing quality. Further research could investigate the variation between angler distribution and fish distribution within a …

Population Characteristics Of Shovelnose Sturgeon During Low- And High-Water Conditions In The Lower Platte River, Nebraska, Jeremy J. Hammen, Martin J. Hamel, Matthew L. Rugg, Edward J. Peters, Mark A. Pegg

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Cycles of low- and high-water periods (i.e., years) in river systems are natural occurrences, but understanding how cyclical climatological patterns affect fishes, especially long-lived species, is unclear. We assessed Shovelnose Sturgeon population dynamics between a period of low- (2001-2004) and high- (2009-2012) water years in the lower Platte River, Nebraska. Low-flow periods in the lower Platte River can cause disconnection(s) between upstream and downstream reaches resulting in isolated pools and elevated water temperatures leading to stressful situations for aquatic life and possible mortality. Our data show no measurable differences between key population indices between flow condition periods which is consistent …

Resilience Concepts In Psychiatry Demonstrated With Bipolar Disorder, David G. Angeler, Craig R. Allen, Maj-Liz Persson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Background: The term resilience describes stress–response patterns of subjects across scientific disciplines. In ecology, advances have been made to clearly distinguish resilience definitions based on underlying mechanistic assumptions. Engineering resilience (rebound) is used for describing the ability of subjects to recover from adverse conditions (disturbances), and is the rate of recovery. In contrast, the ecological resilience definition considers a systemic change: when complex systems (including humans) respond to disturbances by reorganizing into a new regime (stable state) where structural and functional aspects have fundamentally changed relative to the prior regime. In this context, resilience is an emergent property of complex …

A Dynamic Ocean Management Tool To Reduce Bycatch And Support Sustainable Fisheries, Elliot L. Hazen, Kylie L. Scales, Sara M. Maxwell, Dana K. Briscoe, Heather Welch, Steven J. Bograd, Helen Bailey, Scott R. Benson, Tomo Eguchi, Heidi Dewar

Biological Sciences Faculty Publications

Seafood is anessential sourceofprotein formore than3billionpeopleworldwide, yet bycatchof threatened species in capture fisheries remains a major impediment to fisheries sustainability. Management measures designed to reduce bycatch often result in significant economic losses and even fisheries closures. Static spatial management approaches can also be rendered ineffective by environmental variability and climate change, as productive habitats shift and introduce new interactions between human activities and protected species. We introduce a new multispecies and dynamic approach that uses daily satellite data to track ocean features and aligns scales of management, species movement, and fisheries. To accomplish this, we create species distribution models for …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

Intertidal Habitat Utilization By Endangered Green Sturgeon (Acipenser Medirostris), Willapa Bay, Washington, Luke Stilwater

All Master's Theses

This study looks at a portion of the designated critical habitat for the threatened southern distinct population segment of green sturgeon (Acipenser medirostris) in Willapa Bay, Washington. Willapa Bay is an intermediate size (258.7mi2) estuary on the southwest coast of Washington State, approximately 30 miles north from the mouth of the Columbia River. Recent studies completed by the National Marine Fisheries Service have shown that significant aggregations of green sturgeon in Willapa Bay occur during the late summer months, and foraging activity for burrowing ghost shrimp (Neotrypaea californiensis) is evidenced by small round feeding pits (30-60 cm diameter) in the …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2018, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, Nisse Goldberg, Anthony Ouellette, An-Phong Le, Radha Pyati, Charles Closmann, Brian P. Zoellner

State of the River Report

No abstract provided.

Estimating Exploitation Rates In The Alabama Red Snapper Fishery Using A High-Reward Tag–Recapture Approach, Dana K. Sackett, Mattgew Catalano, J. Marcus Drymon, Sean P. Powers, Mark Albins

University Faculty and Staff Publications

Accurate estimates of exploitation are essential to managing an exploited fishery. However, these estimates are often dependent on the area and vulnerable sizes of fish considered in a study. High-reward tagging studies offer a simple and direct approach to estimating exploitation rates at these various scales and in examining how model parameters impact exploitation rate estimates. These methods can ultimately provide a better understanding of the spatial dynamics of exploitation at smaller local and regional scales within a fishery—a measure often needed for more site-attached species, such as the Red Snapper Lutjanus campechanus. We used this approach to tag 724 …

Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson

University Faculty and Staff Publications

A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …

Translating Statistical Species-Habitat Models To Interactive Decision Support Tools, Lyndsie S. Wszola, Victoria L. Simonsen, Erica F. Stuber, Caitlyn R. Gillespie, Lindsey N. Messinger, Karie L. Decker, Jeffrey J. Lusk, Christopher F. Jorgensen, Andrew A. Bishop, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Understanding species-habitat relationships is vital to successful conservation, but the tools used to communicate species-habitat relationships are often poorly suited to the information needs of conservation practitioners. Here we present a novel method for translating a statistical species-habitat model, a regression analysis relating ring-necked pheasant abundance to landcover, into an interactive online tool. The Pheasant Habitat Simulator combines the analytical power of the R programming environment with the user-friendly Shiny web interface to create an online platform in which wildlife professionals can explore the effects of variation in local landcover on relative pheasant habitat suitability within spatial scales relevant to …

Forecasting The Spread And Invasive Potential Of Apple Snails (Pomacea Spp.) In Florida, Stephanie A. Reilly

HCNSO Student Theses and Dissertations

Forecasting the potential range of invasive species is a critical component for risk assessment, monitoring, and management. However, many of these invasive species are not yet at equilibrium which can be problematic for many modelling approaches. Using the climate matching method, MaxEnt, a series of species distribution models (SDMs) and risk analysis maps were created for select apple snail species in Florida: Pomacea canaliculata, P. diffusa, and P. maculata. Apple snails, freshwater gastropods in the family Ampullariidae, are native to South America and were introduced to the United States via the pet trade approximately 40 years ago. …

The Ecology Of Antibiotic Resistance: Sources And Persistence Of Vancomycin-Resistant Enterococci And Antibiotic Resistant Genes In Aquatic Environments, Suzanne M. Young

USF Tampa Graduate Theses and Dissertations

The growing crisis of antibiotic resistance is a major threat to ecosystems and human health. Infections caused by known and emerging antibiotic resistant pathogens are on the rise globally, with approximately 700,000 deaths per year caused by antibiotic resistant bacteria (1). In the United States, infections from antibiotic resistant bacteria cause more than 2 million illnesses and 23,000 deaths (2). Antibiotic resistant bacteria and antibiotic resistance genes are released into aquatic ecosystems through hospital waste, residential sewer lines and animal agricultural waste streams. Animal agriculture accounts for approximately 70% of antibiotic use in the United States (3). In agricultural ecosystems, …

The Utility Of Bioenergetics Modelling In Quantifying Predation Rates Of Marine Apex Predators: Ecological And Fisheries Implications, A. Barnett, M. Braccini, C. L. Dudgeon, N. L. Payne, K. G. Abrantes, M. Sheaves, E. P. Snelling

Fisheries Research Articles

Predators play a crucial role in the structure and function of ecosystems. However, the magnitude of this role is often unclear, particularly for large marine predators, as predation rates are difficult to measure directly. If relevant biotic and abiotic parameters can be obtained, then bioenergetics modelling offers an alternative approach to estimating predation rates, and can provide new insights into ecological processes. We integrate demographic and ecological data for a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus, with energetics data from the literature, to construct a bioenergetics model to quantify predation rates on key fisheries species in …

Interactive Effects Of Flow Regime, Climate Change, And Angler Harvest On Smallmouth Bass At The Southern Range Extent, Christopher Middaugh

Graduate Theses and Dissertations

The Ozark-Ouachita Interior Highlands of Arkansas, Oklahoma, and Missouri are the southern extent of native Smallmouth Bass Micropterus dolomieu range. Smallmouth Bass are an important species economically and ecologically, but it is unknown how climate change may affect them in this region and in particular how Smallmouth Bass may be affected differently across streams from various flow regimes. Here I present three projects investigating how climate change, flow regime, and angler harvest may interact to affect Smallmouth Bass over the coming century. I first modeled present and future water temperatures and calculated growth rate potential for Smallmouth Bass from streams …

A Comparison Of Five Statistical Methods For Predicting Stream Temperature Across Stream Networks, Maike F. Holthuijzen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of freshwater aquatic systems, particularly stream networks, is mainly influenced by water temperature, which controls biological processes and influences species distributions and aquatic biodiversity. Thermal regimes of rivers are likely to change in the future, due to climate change and other anthropogenic impacts, and our ability to predict stream temperatures will be critical in understanding distribution shifts of aquatic biota. Spatial statistical network models take into account spatial relationships but have drawbacks, including high computation times and data pre-processing requirements. Machine learning techniques and generalized additive models (GAM) are promising alternatives to the SSN model. Two machine learning …

Columbia River Basin Salmon And Steelhead Long-Term Recovery Situation Assessment, Oregon Solutions, William D. Ruckelshaus Center

National Policy Consensus Center Publications

In the fall of 2012, after consulting with a wide range of salmon recovery partners, NOAA Fisheries asked Oregon Consensus and the William D. Ruckelshaus Center (university-based, neutral, third-party institutions devoted to promoting collaborative governance and consensusbased public policy) to conduct an independent, impartial situation assessment to explore regional views about how best to approach comprehensive, long-term salmon and steelhead recovery in the Basin. The centers assembled an Assessment Team comprised of practitioners and academics from Washington, Oregon and Idaho.

The Assessment Team conducted 206 semi-structured interviews with individuals selected for their knowledge of, engagement in, and/or concern for salmon …

Strong Population Structure Deduced From Genetics, Otolith Chemistry And Parasite Abundances Explains Vulnerability To Localized Fishery Collapse In A Large Sciaenid Fish, Protonibea Diacanthus, Laura Taillebois, Diane P. Barton, David Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine Dudgeon, Safia Maher, Jennifer Ovenden

Fisheries Research Articles

As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localized declines in the abundance of this species have been observed, highlighting the urgent requirement by managers …

Landowner And Practitioner Perspectives On Private Land Conservation Programs, Michelle L. Lute, Caitlyn R. Gillespie, Dustin R. Martin, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Efforts to reverse declines in native grasslands benefit from agricultural policies that encourage private land conservation. The U.S. Department of Agriculture’s Conservation Reserve Program (CRP) improved conservation across landscapes but enrollment has declined. We used sequential exploratory mixed methods to compare landowner and conservation practitioners’ perceptions, evaluate perceived benefits, and identify potential improvements to CRP. Focus groups of practitioners informed a quantitative survey of landowners who had properties >160 total acres in Nebraska. Results suggest potential misalignment in perceptions between practitioners and landowners. Practitioners were concerned that conservation, especially of wildlife, was secondary to profit. But the majority of landowners …

Regime Shifts And Panarchies In Regional Scale Social-Ecological Water Systems, Lance Gunderson, Barbara Cosens, Brian C. Chaffin, Craig Anthony (Tony) Arnold, Alexander K. Fremier, Ahjond S. Garmestani, Robin Kundis Craig, Hannah Gosnell, Hannah E. Birge, Craig R. Allen, Melinda Harm Benson, Ryan R. Morrison, Mark C. Stone, Joseph Hamm, Kristine Nemec, Edella C. Schlager, Dagmar Llewellyn

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

In this article we summarize histories of nonlinear, complex interactions among societal, legal, and ecosystem dynamics in six North American water basins, as they respond to changing climate. These case studies were chosen to explore the conditions for emergence of adaptive governance in heavily regulated and developed social-ecological systems nested within a hierarchical governmental system. We summarize resilience assessments conducted in each system to provide a synthesis and reference by the other articles in this special feature. We also present a general framework used to evaluate the interactions between society and ecosystem regimes and the governance regimes chosen to mediate …

Ecosystem-Based Fisheries Management (Ebfm) Risk Assessment Of The Western Australian Abalone Managed Industry, F J. Webster, B Wise, Anthony M. Hart

WA Marine Stewardship Council report series

This report provides a comprehensive overview of the Western Australian (WA) Abalone Managed Fishery (AMF) and the outcomes from the 2015 ecological risk assessment of this fishery. The AMF targets three species of abalone greenlip (Haliotis laevigata), brownlip (H. conicopora) and Roe’s abalone (H. roei). Greenlip and brownlip abalone are primarily targeted on the south coast of WA, while Roe’s abalone is primarily targeted on the West Coast. Commercial fishing for abalone in WA has been undertaken since 1964.

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Management Strategy Evaluation For The Atlantic Surfclam (Spisula Solidissima) Using A Spatially Explicit, Vessel-Based Fisheries Model, Kelsey M. Kuykendall, Eric N. Powell, John M. Klink, Paula T. Moreno, Robert T. Leaf

CCPO Publications

The commercially valuable Atlantic surfclam (Spisula solidissima) is harvested along the northeastern continental shelf of the United States. Its range has contracted and shifted north, driven by warmer bottom water temperatures. Declining landings per unit of effort (LPUE) in the Mid-Atlantic Bight (MAB) is one result. Declining stock abundance and LPUE suggest that overfishing may be occurring off New Jersey. A management strategy evaluation (MSE) for the Atlantic surfclam is implemented to evaluate rotating closures to enhance Atlantic surfclam productivity and increase fishery viability in the MAB. Active agents of the MSE model are individual fishing vessels with …

Dollars From The Sea: Jacksonville And The Ocean Business, Committee Of 100 Jacksonville Area Chamber Of Commerce

City and Regional Planning -- Florida

Book details Jacksonville's oceanographic history 1967-1974

A Critical Analysis Of The Direct Effects Of Dredging On Fish, Amelia S. Wenger, Euan S. Harvey, Shaun K. Wilson, Christopher A. Rawson, Stephen J. Newman, Douglas Clarke, Benjamin J. Saunders, Nicola Browne, Michael J. Travers, Jennifer L. Mcilwain, Paul L A Erftemeijer, Jean-Paul A. Hobbs, Dianne L. Mclean, Martial Depczynski, Richard D. Evans

Fisheries Research Articles

Dredging can have significant impacts on aquatic environments, but the direct effects on fish have not been critically evaluated. Here, a meta-analysis following a conservative approach is used to understand how dredging-related stressors, including suspended sediment, contaminated sediment, hydraulic entrainment and underwater noise, directly influence the effect size and the response elicited in fish across all aquatic ecosystems and all life-history stages. This is followed by an in-depth review summarizing the effects of each dredging-related stressor on fish. Across all dredging-related stressors, studies that reported fish mortality had significantly higher effect sizes than those that describe physiological responses, although indicators …

Estimating Seasonal Variation In Condition Of Yellow Perch, Emily Anne Powers

Biology Graduate Theses

Research has shown that Yellow Perch Perca flavescens, found throughout lakes and streams of North America, are good indicators of environmental health. Due to the correlation between fish condition and ecosystem health it is essential to reliably estimate condition to better manage our fisheries. Therefore, the study objectives were to measure the seasonal changes in adult Yellow Perch percent dry weight (PDW), and compare the reliability of bioelectrical impedance analysis (BIA) and morphometric-based estimates of condition. The seasonal fluctuations in average monthly PDW were measured over a two- year period and were sinusoidal in shape with peaks in August 2015 …