Aquaculture and Fisheries Commons^™

Evolution Of Vacuolar Pyrophosphatases And Vacuolar H+-Atpases In Diatoms, Adrien Bussard, Pascal Jean Lopez

Journal of Marine Science and Technology–Taiwan

To cope with changing environments and maintain optimal metabolic conditions, the control of the intracellular proton gradients has to be tightly regulated. Among the important proton pumps, vacuolar H+ -ATPases (V-ATPases) and H+ - translocating pyrophosphatases (H+ -PPases) were found to be involved in a number of physiological processes, and shown to be regulated at the expression level and to exhibit specific sub-cellular localizations. Studies of the role of these transporters are relatively scarce in algae and nearly absent in diatoms. Phylogenetic analyses disclose that diatoms, with both K+ -dependent and K+ -independent membrane integral pyrophosphatases, including proteins with high …

Polychaetes As Annelid Models To Study Ecoimmunology Of Marine Organisms, Virginie Cuvillier-Hot, Céline Boidin-Wichlacz, Aurélie Tasiemski

Journal of Marine Science and Technology–Taiwan

Annelids are among the first coelomates and are therefore of special phylogenetic interest. They constitute an important part of the biomass of the seashore, estuaries, fresh water and terrestrial soils. Moreover, they occupy a central position in the trophic networks, as a major food source for fishes, birds and terrestrial fauna. Among Annelids, the large majority of polychaetes is restricted to the marine domain. This report gives an overview of the immune strategies developed by polychaetes to fight pathogens. The potential and interest to use these worms as biomarkers to monitor the influence of environmental perturbation on the immunity of …

Neurogenesis In Cephalopods: "Eco-Evo-Devo" Approach In The Cuttlefish Sepia Officinalis (Mollusca-Cephalopoda), Sandra Navet, Sébastien Baratte, Yann Bassaglia, Aude Andouche, Auxane Buresi, Laure Bonnaud

Journal of Marine Science and Technology–Taiwan

Cephalopods are new evolutionary and ecological models. By their phylogenetic position (Lophotrochozoa, Mollusca), they provide a missing master piece in the whole puzzle of neurodevelopment studies. Their derived and specific nervous system but also their convergence with vertebrates offer abundant materials to question the evolution and development of the nervous system of Metazoa (evo-devo studies). In addition, their various adaptions to different modes of life open new fields of investigation of developmental plasticity according to ecological context (eco-evo-devo approach). In this paper, we review the recent works on cephalopod nervous developmental investigations. We show how cephalopods, and especially Sepia officinalis, …

Traditional Vs New Approaches For Assessing Coral Health: A Global Overview And The Paradigm Of French Polynesia, Laetitia Hédouin, Véronique Berteaux-Lecellier

Journal of Marine Science and Technology–Taiwan

Today, there is increasing concern regarding the capacity of Scleractinian corals to sustain the growing number of insults associated with global and local changes (e.g. global warming, ocean acidification, pollution). If corals are to exist, there is an urgent need to use indicators of coral health that provide insight into early sub lethal shifts in corals before the irreversible effects of exposure manifest at the population and community levels. This paper will provide an overview of the most relevant and appropriate indicators of coral health currently used in traditional monitoring programs (traditional approach) or those that could be used in …

Assessing The Potential Bacterial Origin Of The Chemical Diversity In Calcareous Sponges, Elodie Quévrain, Mélanie Roué, Isabelle Domart-Coulon, Marie-Lise Bourguet-Kondracki

Journal of Marine Science and Technology–Taiwan

The chemodiversity and cultivable bacterial diversity of temperate calcareous sponges were investigated in a time series of collection of two sponges, Leuconia johnstoni (Baerida, Calcaronea) collected from the northeastern Atlantic Ocean and Clathrina clathrus (Clathrinida, Calcinea) collected from the northwestern Mediterranean Sea, using combined chemical and microbiological approaches. Bacteria were visualized in tissue sections of these sponges with Gram staining and in situ hybridization. The sponge crude extracts revealed annually persistent biological activities against reference human pathogen strains: L. johnstoni extracts displayed antimicrobial activity against a Gram positive Staphylococcus aureus strain; C. clathrus extracts displayed a broad spectrum of antimicrobial …

Diversity Of Bacterial Communities On Sunken Woods In The Mediterranean Sea, Sandrine Bessette, Sonja K. Fagervold, Chiara Romano, Daniel Martin, Nadine Le Bris, Pierre E Galand

Journal of Marine Science and Technology–Taiwan

Sunken woods are very rich and diverse ecosystems supporting large macrofaunal diversity and representing a source of carbon and energy for any heterotrophic organism able to consume plant material, and those relying on specialized microbial taxa. However, relatively little is known about the microbial communities that degrade sunken woods and produce reduced compounds that serve as energy sources for chemosynthetic lifestyles. The purpose of this study was to explore the bacterial diversity developing on and within sunken woods in a NW Mediterranean submarine canyon and its adjacent slope by using 16S rRNA genes survey. We described communities from Pine wood …

Crustacean Hyperglycemic Hormone: Structural Variants, Physiological Function, And Cellular Mechanism Of Action, Chi-Ying Lee, Kuo-Wei Tsai, Wei-Shiun Tsai, Jia-Ying Jiang,, Yan-Jhou Chen

Journal of Marine Science and Technology–Taiwan

Crustacean hyperglycemic hormone (CHH) is a peptide hormone originally identified in the X-organ/sinus gland (XO/ SG) complex of the eyestalks. It belongs to the CHH family which also includes molt-inhibiting hormone (MIH), vitellogenesis-inhibiting hormone (VIH), and mandibular organinhibiting hormone (MOIH), and ion transport peptide (ITP). Multiple molecular variants of CHH are generated by both post-transcriptional and post-translational mechanisms. In addition to the XO/SG complex, CHH gene is widely expressed in many extra-eyestalk tissues. Functionally, available data indicate that CHH is involved with the regulation of carbohydrate metabolism and stress-induced hyperglycemia. Several other physiological processes, including molting, ion and water balance, …

Hydrothermal Vent Effluents Affect Life Stages Of The Copepod Tisbe Sp, Hans-Uwe Dahms, Li-Chun Tseng, Derek Moo-Chul Shim, Jiang-Shiou Hwang

Journal of Marine Science and Technology–Taiwan

We examined the environmental effects of various concentrations of hydrothermal vent (HV) effluents on growth, reproduction, and survivorship of the Tisbe sp. harpacticoid copepod that were retrieved from localities near the vent. Developmental stages (nauplii and copepodids) were exposed to various concentrations of HV effluents in a static renewal culture system. In the survivorship experiments, we tested 3 distinct developmental phases in HV effluent dilutions from 50% to 1%. The HV effluents considerably reduced the survivorship of the naupliar stages at concentrations of >1% (P < 0.05); all nauplii died at concentrations of 25% and 50%. The copepodids were considerably affected at concentrations of >1% in Tisbe sp. (P < 0.05), and no copepodid survived at 50% (P < 0.01). The adult females died at a 50% concentration in Tisbe sp. The developmental duration was not considerably affected in the naupliar or copepodid phases; however, it exhibited a trend of developmental delay. The naupliar development of Tisbe sp. was substantially delayed at a concentration of 10% (P < 0.01), whereas copepodids and adults only exhibited a trend of delayed development with increasing HV concentration. The endpoint mortality exhibited a greater sensitivity to chemical exposure than the endpoint development time. The early developmental stages of Tisbe sp. in both traits were more sensitive to HV effluents than advanced stages. Mortality was a useful toxicological endpoint compared that of developmental duration. We demonstrated that Tisbe sp. may be used in the monitoring of acute and life cycle effects of natural marine pollution caused by HV effluents.

The Role Of Underutilized Fish In New England's Seafood System, Taylor Witkin

Honors Theses

The global fisheries crisis has led to an increasing recognition for the need to relieve pressure on overfished, popular food fish stocks. Opportunities exist to shift consumer demand toward more sustainable choices, including fish that may be locally abundant. Attempts have been made to market underused fish (sometimes termed “trash fish”) that represent more sustainable alternatives; however, it is unclear whether consumers will choose to purchase these more sustainable options, particularly if underused fish are also unfamiliar. Chapter 1 reviews existing research and current issues surrounding sustainable seafood and the recent shift toward local, abundant, undervalued species in New England’s …

Angler Effort And Catch Within A Spatially Complex System Of Small Lakes, Christopher J. Chizinski, Dustin R. Martin, Kevin L. Pope, Tony J. Barada, Jeffrey J. Schuckman

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Spatial layout of waterbodies and waterbody size can affect a creel clerk’s ability to intercept anglers for interviews and to accurately count anglers, which will affect the accuracy and precision of estimates of effort and catch. This study aimed to quantify angling effort and catch across a spatially complex system of19 small (<100 ha) lakes, the Fremont lakes. Total (±SE) angling effort (hours) on individual lakes ranged from 0 (0) to 7,137 (305). Bank anglers utilized 18 of the 19 lakes, and their mean (±SE) trip lengths(hours) ranged from 0.80 (0.31) to 7.75 (6.75), depending on the waterbody. In contrast, boat anglers utilized 14 of the 19 lakes, and their trip lengths ranged from 1.39 (0.24) to 4.25 (0.71), depending on the waterbody. The most sought fishes, as indexed by number of lakes on which effort was exerted, were anything (17 of 19 lakes), largemouth bass Micropterus salmoides (15 of 19 lakes), and channel catfish Ictalurus punctatus (13 of 19 lakes). Bluegill Lepomis machrochirus, crappie Pomoxis spp., and largemouth bass were caught most frequently across the lakes, but catch rates varied considerably by lake. Of the1,138 parties interviewed, most parties (93%) visited …

Oceanography, Geology, Biogeography, And Fisheries Of The Eastern Central Atlantic, Merete Tandstad, Ana Maria Caramelo, Fabio Carocci, Kent Carpenter, Jonnell C. Sanciangco

Biological Sciences Faculty Publications

[Introduction] This species identification guide focuses on the marine species occurring in the eastern Atlantic Ocean from Gibraltar in the north (36°00'N) to the middle of Namibia in the south (23°00'S) and westward to 30°00'W longitude (FAO Fishing Area 34) and to 20°00'W longitude (FAO Fishing Area 47) (Fig 1). Estuarine species, as well as species that only spend part of their life cycle in marine waters (anadromous and catadromous species) are also included.

The West African coast encompasses some of the most productive areas in the world, supporting important fishery resources and a unique diversity. Fisheries constitute an important …

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2014, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Lucy Sonnenberg, Gerry Pinto, Nisse Goldberg, Kimberly Mann, Radha Pyati, Gretchen Bielmyer-Fraser, Stuart Chalk, Peter Bacopoulos, Brian P. Zoellner

State of the River Report

No abstract provided.

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sea urchins, important herbivores in marine ecosystems, are strongly impacted by both the direct and indirect effects of predation, and the long-spined sea urchin Diadema antillarum is no exception. Once abundant on Caribbean coral reefs, D. antillarum populations were decimated by disease in the early 1980s, and only where their natural predators have been over-fished has D. antillarum recovery been observed. Spiny lobsters (Palinuridae) are predators of sea urchins, and although there are several species of spiny lobster in the Caribbean, only the spotted spiny lobster Panulirus guttatus is restricted to coral reefs where D. antillarum dwells. We investigated the …

Integrating Societal Perspectives And Values For Improved Stewardship Of A Coastal Ecosystem Engineer, Steven B. Scyphers, J. Steven Picou, Robert D. Brumbaugh, Sean P. Powers

University Faculty and Staff Publications

Oyster reefs provide coastal societies with a vast array of ecosystem services, but are also destructively harvested as an economically and culturally important fishery resource, exemplifying a complex social-ecological system (SES). Historically, societal demand for oysters has led to destructive and unsustainable levels of harvest, which coupled with multiple other stressors has placed oyster reefs among the most globally imperiled coastal habitats. However, more recent studies have demonstrated that large-scale restoration is possible and that healthy oyster populations can be sustained with effective governance and stewardship. However, both of these require significant societal support or financial investment. In our study, …

Distribution And Elimination Of 3-Trifluoromethyl-4-Nitrophenol (Tfm) By Sea Lamprey (Petromyzon Marinus) And Non-Target, Rainbow Trout (Oncorhynchus Mykiss) And Lake Sturgeon (Acipenser Fulvescens), Michael W. Le Clair

Theses and Dissertations (Comprehensive)

The pesticide, 3-trifluoromethyl-4-nitrophenol (TFM), has been highly successful in the control of sea lamprey (Petromyzon marinus) populations in the Great Lakes. Treatments with TFM involve applying it to streams, where it targets larval sea lamprey which live burrowed in the stream substrate. While the toxic mechanism of TFM has been elucidated, and its effects on sea lamprey described, its effects on non-target fish species such as rainbow trout (Oncorhynchus mykiss) and lake sturgeon (Acipenser fulvescens) are not as well understood. The present work demonstrated that rainbow trout show a great capacity to detoxify the lampricide using glucuronidation, when exposed to …

Growth Of Tropical Dasyatid Rays Estimated Using A Multi-Analytical Approach, Owen R. O'Shea, Matias Braccini, Rory Mcauley, Conrad W. Speed, Mark G. Meekan

Fisheries Research Articles

We studied the age and growth of four sympatric stingrays: reticulate whipray, Himanutra uarnak (n=19); blue mask, Neotrygon kuhlii (n=34); cowtail, Pastinachus atrus (n=32) and blue-spotted fantail, Taeniura lymma (n=40) rays at Ningaloo Reef, a fringing coral reef on the north-western coast of western Australia. Age estimates derived from band counts within sectioned vertebrae ranged between 1 and 27 years (H. uarnak, 1 - 25 yrs.; N. kuhlii, 1.5 - 13 yrs.; P. atrus, 1 - 27 yrs. and T. lymma, 1 -11 yrs.). Due to limitations of sample sizes, we combined several analytical methods …

Reported Incidences Of Parasitic Infections In Marine Mammals From 1892 To 1978, John R. Felix

Zea E-Books Collection

The role of parasites in the lives and deaths of marine mammals has been scrutinized by biologists for decades, but the scientific literature prior to 1978 has been difficult to acquire and time-consuming to search. Now this new and extensive bibliography gives researchers a convenient resource for reviewing the classical literature on parasites of marine mammals so that historical infection prevalence and geographical distribution can be easily and properly assessed. This book contains detailed information about accepted (or suspected) taxonomic synonyms and geographical information about the host and/or parasite, covering the parasite groups Acanthocephala, Acarina, Anoplura, Cestoda, Nematoda, and Trematoda, …

Review Of Report On The “Status Of Nearshore Finfish Stocks In South-Western Western Australia: Australian Herring And Tailor”, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Ccaat/Enhancer-Binding Protein Delta (C/Ebp-Delta) Expression In Antarctic Fishes: Implications For Cell Cycle And Apoptosis, Isaac Martin Sleadd

Dissertations and Theses

Chapter 1: Antarctic fishes are extremely cold adapted. Despite their inability to upregulate heat shock proteins, recent studies have demonstrated a capacity for heat response in these animals. A cDNA microarray study looked at the Notothenioid fish Trematomus bernacchii and revealed heat sensitivities for hundreds of genes, two of which code for members of the CCAAT/Enhancer-binding protein (C/EBP) family of transcription factors. These molecular switches are best known for their roles in apoptosis, inflammation and cell cycle arrest. This dissertation further elucidates the role of C/EBP-delta in the Antarctic fishes T. bernacchii and Pagothenia borchgrevinki.

Chapter 2: C/EBP-delta is constitutively …

James’S Rule And Causes And Consequences Of A Latitudinal Cline In The Demography Of John’S Snapper (Lutjanus Johnii) In Coastal Waters Of Australia, Mike Cappo, Ross J. Marriott, Stephen J. Newman

Fisheries Research Articles

Demographic parameters were derived from sectioned otoliths of John’s Snapper (Lutjanus johnii) from 4 regions across 9° of latitude and 23° of longitude in northern Australia. Latitudinal variation in size and growth rates of this species greatly exceeded longitudinal variation. Populations of John’s Snapper farthest from the equator had the largest body sizes, in line with James’s rule, and the fastest growth rates, contrary to the temperature size rule for ectotherms. A maximum age of 28.6 years, nearly 3 times previous estimates, was recorded and the largest individual was 990 mm in fork length. Females grew to a larger mean …

In-Water Hull Cleaning And Filtration System: In-Water Cleaning Trials, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

In-Water Hull Cleaning System Cost & Cost Benefit Analysis, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Guidance Statement For Oil And Gas Industry Consultation With The Department Of Fisheries, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Fish Species Distribution In Seagrass Habitats Of Chesapeake Bay Are Structured By Abiotic And Biotic Factors, Jason J. Schaffler, Jacques Van Montfrans, Cynthia M. Jones, Robert J. Orth

OES Faculty Publications

Seagrass habitats have long been known to serve as nursery habitats for juvenile fish by providing refuges from predation and areas of high forage abundance. However, comparatively less is known about other factors structuring fish communities that make extensive use of seagrass as nursery habitat. We examined both physical and biological factors that may structure the juvenile seagrass-associated fish communities across a synoptic-scale multiyear study in lower Chesapeake Bay. Across 3years of sampling, we collected 21,153 fish from 31 species. Silver Perch Bairdiella chrysoura made up over 86% of all individuals collected. Nine additional species made up at least 1% …

Bioremediation Mariculture In Zanzibar, Tanzania: A Viability Assessment Of Using Bath Sponge And Pearl Oyster Farms To Filter Highly Olluted Waters In The Zanzibar Channel, Hayley Oakland

Independent Study Project (ISP) Collection

Bioremediation of polluted water off the coastline of the urban center of Zanzibar—Stone Town, Unguja—was assessed for implementation feasibility through bath sponge and pearl oyster mariculture. A vast research base of the city’s coastal area exists, including the pollution concentrations at various locations, the ramifications of this pollution on the fringing ecosystems, and the relevant water circulation system of eddies and passageways produced by the north flowing East African Counter Current. In following the experimental examples of bioremediation projects around the world, this study tested facets of the filtration abilities of marine sponges and oysters. Both organisms suggested strong pollution …

Comparative Phylogeography Of The Emperor Snappers Lethrinus Lentjan And Lethrinus Harak (Lethrinidae: Percoidei) In The Coral Triangle, Andrew B. Hines

Biological Sciences Theses & Dissertations

Many questions remain regarding the origins of the well-known peak in marine biodiversity found in the Coral Triangle. Barriers to gene flow may promote lineage diversification and provide the potential for speciation contributing to the high biodiversity in this area. Population structure was examined in two species of Emperor Snappers (Lethrinidae), Lethrinus harak and Lethrinus lentjan. These species were selected because they share similar life-history traits and geographic distributions, but differ in their habitat preferences. Specimens were collected from within the Coral Triangle as well as other localities across the Indo-Pacific. To investigate phylogeographic patterns and structure a hypervariable …

Behavioural Salinity Preferences Of Juvenile Green Sturgeon Acipenser Medirostris Acclimated To Fresh Water And Full-Strength Salt Water, J. B. Poletto, D. E. Cocherell, A. P. Klimley, J. J. Cech Jr., N. A. Fangue

School of Natural Resources: Faculty Publications

To quantify the salinity preference of juvenile green sturgeon Acipenser medirostris, two groups of A. medirostris [140 days post hatch (dph); total length (L_T) 38.0–52.5 cm] were acclimated to either near fresh water (mean ± S.E. salinity = 3.2 ± 0.6) or full-strength salt water (34.1 ± 1.2) over 8 weeks. Following acclimation, the two groups were divided into experimental and control groups, where experimental A. medirostris from both freshwater and saltwater acclimations were individually introduced (200–220 dph) into a rectangular salinity-preference flume (maximum salinity gradient: 5–33). Control A. medirostris were presented with only their acclimation …

Systematic Ichthyofaunal Surveys In Urban And Non-Urban Watersheds, Eugene G. Maurakis, David V. Grimes, Amanda Schutt, Suzy Short

Virginia Journal of Science

Objectives were to model fish species richness relative to natural and anthropogenic variables in Quantico Creek, a forested undisturbed stream environment, and Cameron Run, a highly disturbed urban stream environment in the lower Piedmont-Fall Line region of the Potomac River watershed. Species richness in all stream orders (e.g. avg. range=2.5-9.65 in 1st-3rd orders) of Quantico Creek were significantly higher than those (e.g. avg. range=2.1- 7.6 in 1st -4th orders) of Cameron Run. Fish species richness in Quantico Creek watershed can be modeled by eight factors: season, stream order, elevation, river km, stream width and depth, watershed size, and percent of …

Corrected Numbers For Fish On Red List, Bruce B. Collette, Beth Polidoro, Kent Carpenter

Biological Sciences Faculty Publications

(First paragraph) Kelly Swing gives inaccurate numbers for marine fish species on the International Union for Conservation of Nature (IUCN) Red List of Threatened Species. He also mistakenly conflates the scientific process of species assessment for the Red List with the separate political process of IUCN member voting (Nature 494, 314; 2013).