Animal Sciences Commons^™

Oregon State Rank Assessment For Northern Leopard Frog (Lithobates Pipiens), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Northern leopard frog (Lithobates pipiens) using NatureServe methodology, 2023.

Rainbow Parrotfish Neurocranium, Theophilus J. Hebert, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Deep Ocean Vehicle Applications And Modifications, Nichole "Nikki" T. Arm

Master's Theses

This project had two primary goals: (1) to explore opportunities to further a deep-ocean vehicle’s reach using alternative pressure spheres, and (2) to implement an existing deep-ocean vehicle (lander) in active scientific research.

I gained a greater understanding of the limitations and design choices made for existing pressure spheres using Finite Element Analysis (FEA). My simplified FEA model predicted sphere failure for the existing 30% Fiber Glass 70% Nylon injection molded spheres at an external pressure of 3,954psi or 2,690m ocean-depth (only a 7.38% error compared to the tested minimum failure depth), so I determined it a valid model. I …

Oregon State Rank Assessment For Oak Titmouse (Baeolophus Inornatus), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Oak Titmouse (Baeolophus inornatus) using NatureServe methodology, 2024.

In Vitro And In Vivo Evaluation Of Antimicrobial Activity, Oocyst Sporulation Rate, Oocyst Integrity And Oocyst Infectivity In Eimeria Maxima M6 Oocyst Suspensions Treated With Chlorhexidine Salts In Comparison With Potassium Dichromate, Lauren Laverty

Graduate Theses and Dissertations

Eimeria species oocysts cause coccidiosis, one of the costliest diseases in the poultry industry. Coccidiosis infections cause significant economic losses due to reduced performance in chickens and turkeys. The objective of this thesis was to determine fecal bacterial recovery from chlorhexidine (CHX) salt suspensions containing Eimeria maxima M6 oocysts and evaluate the effect of CHX salts on oocysts during long-term cold storage. For bacterial recovery experiments, CHX digluconate and CHX gluconate were tested at different concentrations on poultry fecal slurries during oocyst shedding. Eimeria maxima M6 oocysts were evaluated in CHX salt suspensions to test the effect on oocyst degradation …

Controlling Salmonella: Strategies For Feed, The Farm, And The Processing Plant, Tomi Obe, Timothy Boltz, Mike Kogut, Steven C. Ricke, Lasheda A. Brooks, Ken Macklin, Ashley Peterson

Poultry Science Faculty Publications and Presentations

Controlling Salmonella in poultry is an ongoing food safety measure and while significant progress has been made, there is a need to continue to evaluate different strategies that include understanding Salmonella-poultry interaction, Salmonella-microbiota interactions, Salmonella genetics and response to adverse conditions, and preharvest and postharvest parameters that enable persistence. The purpose of this symposium is to discuss different strategies to consider from feed milling to the farm to the processing environment. This Poultry Science Association symposium paper is divided into 5 different sections that covers 1) immunological aspects of Salmonella control, 2) application of Salmonella genetics for targeted …

The Nebraska Bird Review (December 2023) 91(4), Whole Issue

Nebraska Bird Review

Fall Field Report, August–November 2023, by W. Ross Silcock

NOU Founding Ornithologist, Hypnotist, Physician: Isador Trostler, by Rick Wright

Yellow-throated Warbler in Scotts Bluff County, Nebraska, by Mark A. Brogie, Bill F. Huser, and Jerry Probst

Holdrege Fall Field Days, Sept. 22–24, 2023

Index to Volume 91

Subscription and Organization Information

Vulnerabilities Of Greater Prairie Chicken And Tier 1 At-Risk Species In Nebraska Caused By Grassland Transition To Woody Dominance, Robert Peterson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Woody plant encroachment is a global threat and has been transitioning grasslands to woody dominance at a biome scale. This threat is present in the Great Plains grassland biome which is currently experiencing grassland biome collapse as the alternative woody biome advances northwest. Nebraska, which contains the most intact temperate grassland in the world, is currently at the front lines of this large-scale transition making this state’s management decisions vital for the remaining grasslands and the species which rely on these ecosystems. In this study, we assess the vulnerability of Greater Prairie Chicken and Tier 1 at-risk species in Nebraska …

Serranidae Spp. Neurocranium, Justin Abonce, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Mapping Density And Distribution Of Ptarmigan And Arctic Ground Squirrels Within Gyrfalcon Breeding Territories In Western Alaska, Michaela L. Gustafson

Boise State University Theses and Dissertations

Shifting climate patterns are modifying Arctic habitats, stressing the need to understand how rapid climate and habitat changes affect Arctic trophic webs. Despite their crucial role in illuminating the impacts of Arctic changes and their ripple effects on predators, like Gyrfalcons, small Arctic primary consumers remain insufficiently studied across their range. To address this gap, I sought to estimate the distribution and abundance of Gyrfalcons' top three prey species (Willow Ptarmigan, Rock Ptarmigan, and Arctic ground squirrels) within Gyrfalcon breeding territories on the Seward Peninsula, Alaska, USA. I also aimed to discern the relationships between different habitats and species’ abundance. …

Impacts Of Disturbance And Nutrient Addition On Coastal Dune Arthropod Communities, Kayla Beitzel

Honors Theses

Coastal dune ecosystems are globally distributed ecosystems that occur from the tropics to the poles and serve as the first line of defense during storms. They are critical habitats for a variety of organisms and also play a critical role in stabilizing coastal habitats. These systems face increased pressure via urban development, recreational expansion, and sea-level rise (Newman et al. 2023; Webster et al. 2005). Insects are vital consumers in coastal ecosystems and act as regulators of plant growth. Low-diversity ecosystems, like coastal dune systems, often contain a higher abundance of low-diverse insect consumers (Ripple et al. 2021), which can …

Fall Field Report, August–November 2023, W. Ross Silcock

Nebraska Bird Review

As in the last few fall seasons, late departure dates continue to increase in number. This is often attributed to a warming climate but may also result from increased observer activity and usage of eBird. Late dates are probably the most important aspect of this report, most prominent the record late fall dates for Ruby-throated Hummingbird, Sanderling, Bank Swallow, and Cassin’s Sparrow. Although these species are taxonomically diverse, there were species group concentrations of late dates, notably among shorebirds. Examples were Marbled Godwit for which the four latest reports this fall were four of the latest six fall dates on …

Index To Volume 91

Nebraska Bird Review

Adams: Pam 11; Paul 11
Aden, Debbie 55
Allard, Savannah 29
Allen, Edward 10
Allison, Betty 30
Alpheus, A. 154
Altman, Dakota 21, 30
Andersen: Bennett 30; Brett 30, 52, 142; D. E. 83
Anderson: Bob 139, 147; Chris 7; Janet 29; Will 68
Angkaew, Rongron 6
Ani, Groove-billed 127, 131
Anich: Charlie 99; Nick 99; Paula 99
Arends, Jim 30
Armstrong, Wyatt 121
Askerooth, Kristine 29
Atkins, Kate 16
Atwell, Erik 55, 58, 99, 100, 102, 112
Audubon, M. 82
Augustine, Jackie 63
Austin, Mary 7
Avocet, American 19, 53, 86, 100, 132, 158

. . .

Zach, Joel …

Nou Founding Ornithologist, Hypnotist, Physician: Isador Trostler, Rick Wright

Nebraska Bird Review

Eminent radiologist Benjamin H. Orndoff, eulogizing an esteemed colleague some months after his death, noted that Isador Simon Trostler (1869–1957) “as a lad . . . became interested in ornithology and herpetology, sending accounts of his observations and explorations to natural history magazines up to the late [18]90s.” Understandably more interested in Trostler’s role as a “pioneer in radiology,” Orndoff had no more to say about the natural history pursuits of one of Nebraska’s most notable early ornithologists, one of the founders 125 years ago of the Nebraska Ornithologists’ Union.

Conversely, we birders have known little or nothing of Trostler’s …

Holdrege Fall Field Days, Janis Paseka

Nebraska Bird Review

The 2023 NOU Fall Field Days were held in Holdrege on September 22–24, with approximately 45 in attendance. The programs were held at the Rodeway Inn. The meeting was planned by Robin Harding, Jan Johnson, and Ruthie Stearns. Field trips were led by Robin Harding, Paul Dunbar, and William Flack to numerous locations including Johnson Lake SRA, Elwood Reservoir WMA, the eagle viewing site on the Phelps County Canal in northern Gosper Co., the Platte River bridge south of Overton, Cottonwood WPA, Harlan Co. Reservoir, the Alma water treatment plant, Funk WPA, Nature's Mosaic Recreation Area, and Sacramento-Wilcox WPA.

The …

Assessing Risks For Bovine And Zoonotic Tuberculosis Through Spatial Analysis And A Questionnaire Survey In Fiji – A Pilot Study, Jenny-Ann L. M. L. Toribio, Keresi Lomata, Sam Fullman, Aaron Jenkins, Elva Borja, Shumaila Arif, Jarrad Mckercher, David Blake, Anabel Garcia, Richard J. Whittington, Frank Underwood, Ben J. Marais

Research outputs 2022 to 2026

Mycobacterium bovis causes tuberculosis in cattle and when transmitted to humans typically causes extra-pulmonary tuberculosis (EPTB). Bovine tuberculosis (bTB) has a global distribution and is controlled in most countries to protect animal and public health. Recent studies revealed that bTB is established on dairy farms in Fiji where EPTB cases have been reported in people. The aims of this pilot investigation were to look for putative zoonotic TB (EPTB) cases in people and to evaluate practices that might contribute to the persistence and transmission of M. bovis between cattle and to humans. Existing data sets were shared between the Fiji …

Analysis Of Mitochondrial Dna Sequence Data Demonstrates That Monophyly Of Myotis Occultus Is Complicated By Greater Sampling Of Myotis Lucifugus, Jeffrey M. Lorch, Daniel R. Taylor, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract

The validity of Myotis occultus as a species unique from Myotis lucifugus has been a source of debate. Most recently, many authorities treat M. occultus as a distinct species, at least in part because a previous study showed that M. occultus and M. l. carissima (the subspecies that occurs in closest geographic proximity to M. occultus) form separate monophyletic clades based on sequences of two mitochondrial genes (cytochrome-b [cytb] and cytochrome oxidase subunit II [COII]). We re-evaluated the phylogenetic relationship between M. occultus and M. lucifugus based on mitochondrial sequences …

Monitoring The Effectiveness Of Wildlife Exits And Bobcat Use Along A South Texas Highway, Jamie E. Langbein

Theses and Dissertations

Roadside exclusion fencing is commonly used to mitigate wildlife road mortalities and property damages caused by wildlife-vehicle collisions. A potential consequence is that animals may become trapped on the road by fencing. On State Highway 100 in South Texas, the Texas Department of Transportation installed ten wildlife exits (WE) allowing animals to exit the roadway through a modified opening in the fence. However, some individuals used the WE to access the roadway. In this study, a new design was implemented, with narrower openings, a ramp and a clear plastic one-way door. While the updated design prevented road access for wildlife, …

Renovating The Ipmu Via Internet Of Things For Pollutant Emission Estimations In Poultry Facilities, Joshua Dotto

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The emissions of ammonia (NH₃), particulate matter (PM_2.5), and carbon dioxide (CO₂) are major concerns in poultry facilities. They can pose environmental concerns and nuances. Robust and affordable measurement systems are needed to accurately measure in-barn concentrations and quantify the emissions.

The Intelligent Portable Monitoring Unit (iPMU or PMU3) developed in 2016 was reconstructed into PMU4 to include upgraded NH₃ and PM_2.5 sensors and wireless connectivity for a low-cost, robust, and accurate air quality monitoring device with contactless data transfer using the concept of Internet of Things (IoT). In addition, a user-friendly …

Assessing The Morphological And Physiological Traits Of Smooth Brome Pastures Under Long Term Grazing And Nutrient Enrichment In Eastern Nebraska, Hassan Shehab

School of Natural Resources: Dissertations, Theses, and Student Research

Climate change together with the increase in demands for food, feed, fuel, and fiber are becoming a threat to sustainability and resilience of agriculture and pasture lands. Bromus inermis (smooth bromegrass) dominates pastures for cattle grazing in Eastern Nebraska, US, where it is planted in monocultures, and is considered high quality forage because of its palatability and high nutritional value for cattle, especially under intensive management practices. Sustainable management of these pastures is key to long-term resilience. This study aims to assess the performance of smooth bromegrass pastures to the combined effects of long-term management practices (since 2005) of fertilization …

The Influence Of Invasive Species On Fishers’ Satisfactions, Caroline M. Laplante

School of Natural Resources: Dissertations, Theses, and Student Research

Invasives species are prevalent and widespread in North America. Outdoor recreational activities, such as fishing, introduce a point in which humans may interact with invasive species and have to adapt their own behaviors. Bigheaded carp in the Missouri River below Gavin’s Point Dam are a group of invasive fish species that were thought to be negatively relating to recreational fishers’ satisfactions. Using a content analysis and an importance-grid, we conclude that invasive species do not strongly relate to recreational paddlefish fishers’ satisfactions. Paddlefish fishers represent a small sub-set of recreational fishers in Nebraska and South Dakota. The content analysis revealed …

Understanding Avidities Of Recreational Activities For People Possessing Fishing Licenses And Residing In Urban Environments, Kyle F. Hansen

School of Natural Resources: Dissertations, Theses, and Student Research

Recreational fishing is one of the world's most popular pastimes, wherein participation is associated with sociodemographic factors. Even so, fishing license sales are declining in the USA in conjunction with a reduction in rural populations as people move to urban areas. Thus, urban areas are constantly growing in population size, population diversity, and geographic size suggesting a need to understand fishing participation in these growing areas. Natural resource managers often use participation to understand recreationists, yet avidity could provide a new way to understand recreationists. The goal of our study is to understand what sociodemographic factors influence the fishing avidity …

Game-Theoretic Approaches To Optimal Resource Allocation And Defense Strategies In Herbaceous Plants, Molly R. Creagar

Department of Mathematics: Dissertations, Theses, and Student Research

Empirical evidence suggests that the attractiveness of a plant to herbivores can be affected by the investment in defense by neighboring plants, as well as investment in defense by the focal plant. Thus, allocation to defense may not only be influenced by the frequency and intensity of herbivory but also by defense strategies employed by other plants in the environment. We incorporate a neighborhood defense effect by applying spatial evolutionary game theory to optimal resource allocation in plants where cooperators are plants investing in defense and defectors are plants that do not. We use a stochastic dynamic programming model, along …

Demographics, Sexual Dimorphism, And Ecological Aspects Of Ambystoma Annulatum (Ringed Salamander) In Northwest Arkansas, Usa, Brian M. Becker

Graduate Theses and Dissertations

The need to study and monitor amphibian populations is increasing along with the threats to their population stability and persistence in nature. Northwest Arkansas is one of the fastest growing areas in the nation and with that growth comes rapid changes in land use, massive alterations to habitats, habitat loss, and the introduction of nonnative plants and animals. Ambystoma annulatum (Ringed Salamander) is an Ambystomatid endemic to the Ozark and Ouachita Mountains of southern Missouri, northern and western Arkansas, and eastern Oklahoma giving it a relatively small distribution compared to most Ambystoma. Therefore, Arkansas constitutes a significant portion of the …

Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman

United States Department of Agriculture Wildlife Services: Staff Publications

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …

Effects Of Short-Term Pesticides Exposure On Swimming Behavior, Tissue Morphology, Oxidative-Nitrative Stress, Antioxidant Expression, And Cellular Apoptosis In Kidneys Of Goldfish, Esmirna Cantú

Theses and Dissertations

The prevalence of pesticides in the aquatic environment continues to increase due to anthropogenic activities and poses a threat to aquatic organisms. The aim of this study was to determine the short-term exposure (one-week) of pesticide mixtures (metolachlor, linuron, isoproturon, tebucanazole, alconifen, atrazine, pendimethalin; azinphos-methyl) on swimming behaviors, kidney morphology, and expression of nitrotyrosine protein (NTP), dinitrophenyl protein (DNP), superoxide dismutase (SOD), catalase (CAT), renin, and cellular apoptosis in goldfish (Carassius auratus). Results indicated that both low- and high-dose pesticide mixtures decreased the distance swimming behavior. Histological analysis showed pesticide exposure alters kidney morphology. DNP, NTP, and renin expressions, and …

Relative Hepatotoxocity, Carcinogenicity, And Toxicogenomics Of Select Dehydropyrrolizidine Alkaloids In Mice, Michael J. Clayton

All Graduate Theses and Dissertations, Fall 2023 to Present

Dehydropyrrolizidine alkaloids are arguably the most important plant derived toxins in terms of impact on human and animal health. Dehydropyrrolizidine alkaloids are a large group of chemically related compounds found in 3% of flowering plants worldwide. Human exposure occurs from ingestion of herbal products including teas supplements or contaminated grain. Animals are exposed through contaminated feed or grazing. There are at least 350 identified toxic PAs, from more than 6,000 plants. The toxins primarily cause liver damage, but some are proven to cause cancer. Indidvidual dehydropyrrolizidine alkaloids vary in their toxic effects. Riddelliine is the only dehydropyrrolizidine alkaloid with extensive …

Characterization Of Enterovirus D68 In A Mouse Model And Evaluation Of Antiviral Therapies, Zoe K. Taylor

All Graduate Theses and Dissertations, Fall 2023 to Present

Enterovirus D68 (EV-D68) is a virus that causes respiratory disease. Children are most commonly affected by EV-D68 but immunocompromised adults can also get infected and develop severe disease signs. In 2014, the United States experienced an unprecedented outbreak of EV-D68. Similar outbreaks were also observed in 2016, 2018 and 2022. Interestingly, few EV-D68 infections were observed in 2020, likely due to public health measures put in place to reduce the spread of another respiratory disease, coronavirus disease 2019 (COVID-19). EV-D68 is in the same virus family as polio, and one of the most concerning findings from these outbreaks is that …

Atmospheric Mercury At Storm Peak Laboratory: Development Of Methods To Calibrate Ambient Oxidized Mercury Measurements And Comparisons To A 3-D Photochemical Transport Model, Tyler Raymond Elgiar

All Graduate Theses and Dissertations, Fall 2023 to Present

Mercury (Hg) is a highly toxic metal found ubiquitously throughout the environment that has the potential to harm wildlife and human health. Human exposure to Hg can lead to symptoms such as blindness, loss of memory, ataxia, and death. Hg exposure to pregnant women and young children is of even greater concern, as high levels of Hg can hinder fetal and child development.

Hg is emitted into the atmosphere through natural and anthropogenic processes such as biomass burning and the incineration of coal, respectively. Hg exists in the atmosphere as elemental Hg (Hg⁰) or in an oxidized form …

The Effects Of Sous Vide Cooking And Cysteine Proteases On Instrumental And Sensory Textural Properties Of Lower Value Cuts Of Beef, Ian Smith

All Theses

Sous vide cooking has the potential to increase the value of lower quality cuts of beef. Understanding the textural properties following a cook-chill sous vide process is crucial to maximizing this potential. The use of enzymes may further increase the value of these products if able to positively alter the texture of the final product.

The first research objective was to use instrumental texture analysis to evaluate potential relationships between enzymatic treatments and sous vide processing time of lower value cuts of beef. Three cuts were evaluated: infraspinatus (top blade), semitendinosus (eye of round), and beef tongue. Infraspinatus and semitendinosus …