Animal Sciences Commons^™

The Effect Of "Casitas" On Lobster Biology And Fishery Sustainability In The Bahamas, Lester George Gittens

Biological Sciences Theses & Dissertations

“Casitas” (artificial table-like structures) are a commercial fishing gear used to harvest Caribbean spiny lobster (Panulirus argus) in the Caribbean and in The Bahamas, where lobster is the most valuable fishery. Yet, casitas are largely unregulated in The Bahamas and they may threaten fishery sustainability through alteration of lobster growth, disease, or mortality rates and due to insufficient information concerning their number and location. Focusing on the lobster fishery in The Bahamas, my objectives were to: (1) investigate the mortality, growth, and susceptibility to disease of lobsters collected in casitas compared to wooden traps and those living in …

Assessing Plant-Wax Markers As A Tool To Estimate Intake And Diet Composition In Beef Cattle, Emily J. Hilburger

Department of Animal Science: Dissertations, Theses, and Student Research

Estimating feed efficiency of ruminants in grazing environments is difficult due to challenges in measuring intake and diet composition of animals that are freely grazing. Plant-wax markers, especially n-alkanes (ALK), have been shown to be a potential tool to calculate intake and diet composition.

Two indoor experiments were conducted in successive years to assess ALK reliability to facilely estimate DMI (EDMI) and diet composition. Heifers were fed a ration of 69.8% corn silage and 30% ground alfalfa with a daily supplement containing a ALK marker (C₃₂). Using a pooled fecal sample increased the …

Investment In Territorial Defence Relates To Recent Reproductive Success In Common Loons (Gavia Immer), Jeremy A. Spool, Lauren V. Riters, Walter H. Piper

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As the value of a limited resource such as a territory increases, animals should invest more in the defence of that resource. Because reproductive success often depends on the quality of a breeding territory, reproductive success or failure may alter the perceived value of territory and affect an animal's investment in territorial defence. We used common loons (Gavia immer) to test the hypothesis that animals with recent breeding success would show stronger territorial defence than those with no recent breeding success. Surprisingly, successful loons responded less, not more, to a simulated intrusion. However, birds with success in the …

Evaluating The Social Behavior And Activity Patterns Of Clouded Leopards (Neofelis Nebulosa) At The Nashville Zoo: Research And Literature Review, Meghan Ryckeley

Mahurin Honors College Capstone Experience/Thesis Projects

The behavior of the elusive clouded leopard (Neofelis nebulosa) is not well understood. In captivity, they are prone to exhibit stress-related behaviors and are often aggressive to conspecifics when paired. The present study built on past research by examining clouded leopards at the Nashville Zoo at Grassmere (NZG) to determine their activity patterns and temperament. Twelve leopards were exposed to familiar and unfamiliar objects and people, as well as their reflection in a mirror over nine trials. The males were often more reactive than the females, and the 5-year olds more reactive than their younger counterparts. The mirror …

Finding A Link Between Circadian Rhythms And The Immune System Of Captive Zebra Finches (Taeniopygia Guttata), Amber Bishop

Mahurin Honors College Capstone Experience/Thesis Projects

Circadian rhythms are commonplace in organisms and are normally controlled by a master clock. More recent evidence suggests that autonomous clocks operate in various systems in the body, including the immune system. This study looks for such a connection between the circadian rhythm and the immune system. In this study, captive zebra finches (Taeniopygia guttata) were exposed to different light and dark cycles and blood samples were taken every six hours. Birds were exposed to 12 hours of light and then 12 hours of darkness (LD), 24 hours of darkness (DD), or 48 hours of DD. After collecting …

The Second Record Of A Relict Akrav Israchanani Levy, 2007 (Scorpiones: Akravidae) From Levana Cave, Israel, Victor Fet, Michael E. Soleglad, Sergei L. Zonstein, Israel Naaman, Shlomi Lubaton, Boaz Langford, Amos Frumkin

Euscorpius

We report the remnants of five new scorpion specimens discovered dead in Levana Cave in Israel in December 2015. We confirm that they belong to the relict scorpion Akrav israchanani Levy, 2007 (Akravidae), famously described from the neighboring Ayyalon Cave, also from dead specimens. The details of morphology of the new specimens are given; they match completely the characters of A. israchanani redescribed by Fet, Soleglad & Zonstein (2011). This second record indicates a wider distribution of this unique cave scorpion, which, however, is extinct in both caves. There is still no evidence that live populations of this species exist.

Effects Of An Early Life Immune Challenge On Body Growth, Personality, Mating Behaviors, And Brain Development Of Zebra Finches (Taeniopygia Guttata), Ahmet Kerim Uysal

USF Tampa Graduate Theses and Dissertations

The developmental stress hypothesis predicts that an aversive condition, such as decreased food intake, predation, and social isolation, in the early developmental stage could have long term effects on behaviors and brain development of an animal. In nature, bird nestlings are susceptible to various factors, such as malnutrition, infections, and parasites. Effects of early life stress on adulthood have been extensively studied with some stressors including malnutrition. However, immune challenges as an early life stressor and their long-term programming effects on adult behaviors are yet to be studied in detail. The goal of the current study was to investigate changes …

Data On The Effect Of In Utero Exposure To Polycyclic Aromatic Hydrocarbons On Genome-Wide Patterns Of Dna Methylation In Lung Tissues, Trevor J. Fish, Abby D. Benninghoff

Animal, Dairy, and Veterinary Science Faculty Publications

Data in this article depict patterns of methylation in lung tissues obtained from the offspring of B6129SF1/J dams and 129S1/SvImJ sires exposed in utero to benzo[a]pyrene (BaP) or dibenzo[def,p]chrysene (DBC) as compared to non-exposed offspring. Genome-wide methylation of lung tumors in adult offspring was determined using methylated DNA immunoprecipitation (MeDIP) with the NimbleGen mouse DNA methylation CpG island array. This data article refers to the research article “DNA methylation in lung tissues of mouse offspring exposed in utero to polycyclic aromatic hydrocarbons,” in which comprehensive data interpretation and analysis are provided.

Description Of A Pathologic White-Tailed Deer (Odocoileus Virginianus) Mandible From Central Georgia, Patrick M. Powers, Alfred J. Mead

Georgia Journal of Science

A pathologic mandible was observed in a male white-tailed deer (Odocoileus virginianus) harvested in central Georgia during the 2015 fall hunting season. The deer was approximately four and a half years of age and displayed no outward indication of injury or evidence of irregular tooth attrition at the time of death. Upon soft tissue removal, the mandible displayed signs of premortem trauma. The pathology was consistent with secondary bone deposition associated with bone breakage. The nature of the fracture suggests that it may have been caused by antler impact during male-to-male sparring. A physical examination of 621 white-tailed …

The Effects Of Gamma Irradiation Sterilization, Temperature, And Ph On The Antimicrobial Activity Of Epinecidin-1, Han-Ning Huang, Chang-Jer Wu, Jyh-Yih Chen

Journal of Marine Science and Technology–Taiwan

This study examined how different processing conditions affected the antibacterial activity of epinecidin-1 alone or in combination with deionized distilled water or KY jelly and evaluated its activity against methicillin resistant Staphylococcus aureus (MRSA) in a product development pipeline. High temperature and γ-irradiation (25 kGy) decreased antimicrobial activity of epinecidin-1, as determined by measuring minimal inhibitory concentrations (MICs) and minimal bactericidal concentrations (MBCs). However, epinecidin-1 exhibited high antimicrobial activity under low pH conditions. The pH stability and the wide spectrum of action against methicillin resistant Staphylococcus aureus (MRSA) may make epinecidin-1 peptide a suitable drug candidate. This research demonstrates the …

Verification Of Echosounder Measurements Of Thickness And Spatial Distribution Of Kelp Forests, Huamei Shao, Kenji Minami, Hokuto Shirakawa, Takashi Maeda, Toshiaki Ohmura, Yoshikazu Fujikawa, Norishige Yotsukura, Masahiro Nakaoka, Kazushi Miyashita

Journal of Marine Science and Technology–Taiwan

Acoustic methods can be used to assess seaweed meadows. The accuracy of the methods is a key factor in the estimation of seaweed distribution and conditions. We obtained and verified thickness and spatial distribution values measured using an echosounder. We determined the thickness of seaweed growing in the coastal waters off Higashidoori-mura, Aomori, Japan on June 5-6, 2013. Acoustic data were collected using an on-board quantitative echosounder at 120 kHz. The thickness was also directly measured at 14 points. The root mean square error (RMSE) of the thickness determined by the acoustic and direct methods was calculated. A survey to …

The Effects Of Fluoride Ions On Neuromuscular Activity And Regeneration In Dugesia Tigrina, John Williams Jr.

Georgia Journal of Science

Fluoride ions have been implicated in numerous nervous system pathologies, though the association of these ions with these conditions has been controversial. The purpose of this research is to determine the effects that fluoride ions have on the nervous system development and function in planarians as a simple model for fluoride-nervous system interactions. In the first set of experiments, planarians were exposed to one of four concentrations of sodium fluoride: 0 mM, 1 mM, 1 mM, and 5 mM. In the second set of experiments, planarians were bisected and exposed to 1 mM of NaCl and NaF for regeneration purposes. …

African Penguins Follow The Gaze Direction Of Conspecifics, Christian Nawroth, Egle Trincas, Livio Favaro

Social Cognition Collection

Gaze following is widespread among animals. However, the corresponding ultimate functions may vary substantially. Thus, it is important to study previously understudied (or less studied) species to develop a better understanding of the ecological contexts that foster certain cognitive traits. Penguins (Family Spheniscidae), despite their wide interspecies ecological variation, have previously not been considered for cross-species comparisons. Penguin behaviour and communication have been investigated over the last decades, but less is known on how groups are structured, social hierarchies are established, and coordination for hunting and predator avoidance may occur. In this article, we investigated how African penguins (Spheniscus demersus) …

A Global Community Effort To Decipher The Unique Biology Of Annual Killifish, Nibia Berois, Graciela Garcia, Rafael O. De Sá

Biology Faculty Publications

Over the past 50 years, annual killifishes arose as alternative model organisms for studies of vertebrate biology. The annual fish offers exceptional advantages for studies of genetics, genomics, developmental biology, population dynamics, ecology, biogeography, and evolution. They inhabit extremely variable freshwater environments in Africa and South America, have a short lifespan and a set of unique and fascinating developmental characteristics. Embryos survive within the dry substrate during the dry season, whereas the adult population dies. Thus, the survival of the populations is entirely dependent on the buried embryos that hatch the next rainy season. Although Old and New World species …

Stress Profile Influences Learning Approach In A Marine Fish, Vincent Raoult, Larissa Trompf, Jane E. Williamson, Culum Brown

Personality Collection

The spatial learning skills of high and low stress juvenile mulloway (Argyrosomus japonicus) were tested in a dichotomous choice apparatus. Groups of fish were formed based on background blood cortisol levels and required to learn the location of a food reward hidden in one of two compartments. Low stress fish characterised by low background levels of the stress hormone cortisol had higher activity levels and entered both rewarded and unrewarded rooms frequently. Within the first week of exposure, however, their preference for the rewarded room increased, indicative of learning. Fish that had high background levels of cortisol, in …

Predicting Parturition In A Long-Gestating Species: Behavioral And Hormonal Indicators In The Asian Elephant (Elephas Maximus), Heather Kelly Velonis

Dissertations and Theses

Captive populations of Asian elephants (Elephas maximus) in North America are not self-sustaining, and increasing reproductive success within captive populations is a high priority. The ability to accurately predict parturition can have a direct impact on elephant welfare. Elephants in captivity often require significant preparation and management throughout the birthing process, and complications during labor and delivery can necessitate immediate intervention, including stillbirth, protracted labor, maternal aggression towards a newborn calf, and dystocia. Being able to predict when parturition will commence can ensure appropriate staff is available and adequate monitoring is performed. Routine endocrine sampling can be used …

Microananteroides Mariachiarae Rossi Et Lourenço, 2015 Is A Junior Synonym Of Akentrobuthus Atakora Vignoli Et Prendini, 2008 (Scorpiones: Buthidae), František Kovařík, Rolando Teruel, Graeme Lowe

Euscorpius

The African monotypic scorpion genus Microananteroides Rossi et Lourenço, 2015 and its single species M. mariachiarae Rossi et Lourenço, 2015, from Ghana, are herein demonstrated to be junior synonyms, respectively, of Akentrobuthus Lamoral, 1976 and A. atakora Vignoli et Prendini, 2008 from neighboring Benin. We provide detailed high-resolution color photographs of the holotype of M. mariachiarae and further show its real tri-chobothrial pattern, which was incorrectly depicted in the original description.

Sustainability Assessment Of U.S. Beef Production Systems, Greg Thoma, Ben Putman, Marty Matlock, Jennie Popp, Leah English

Food Systems

With increasing public concern and awareness of agricultural sustainability issues, comprehensive methodologies such as life cycle assessment are required to benchmark the beef industry and identify areas of opportunity for continuous improvement. To that end, the Beef Checkoff completed a retrospective sustainability assessment benchmark in 2013 by using Eco-efficiency analysis to compare the years 2005 and 2011. At the time of the analysis, the methodology used was the most up-to-date and comprehensive – indeed the analysis remains one of the only complete cradle-to-grave assessments of the U.S. beef industry. In 2015, a further refined version of the Eco-efficiency analysis was …

Rumen Fluid Metabolomics Analysis Associated With Feed Efficiency On Crossbred Steers, Virginia M. Artegoitia, Andrew P. Cassady, Ronald M. Lewis, Harvey C. Freetly

Department of Animal Science: Faculty Publications

The rumen has a central role in the efficiency of digestion in ruminants. To identify potential differences in rumen function that lead to differences in average daily gain (ADG), rumen fluid metabolomic analysis by LC-MS and multivariate/univariate statistical analysis were used to identify differences in rumen metabolites. Individual feed intake and body-weight was measured on 144 steers during 105 d on a high concentrate ration. Eight steers with the greatest ADG and 8 steers with the least-ADG with dry matter intake near the population average were selected. Blood and rumen fluid was collected from the 16 steers 26 d before …

Columbia River Basin Salmon And Steelhead Long-Term Recovery Situation Assessment, Oregon Solutions, William D. Ruckelshaus Center

National Policy Consensus Center Publications and Reports

In the fall of 2012, after consulting with a wide range of salmon recovery partners, NOAA Fisheries asked Oregon Consensus and the William D. Ruckelshaus Center (university-based, neutral, third-party institutions devoted to promoting collaborative governance and consensusbased public policy) to conduct an independent, impartial situation assessment to explore regional views about how best to approach comprehensive, long-term salmon and steelhead recovery in the Basin. The centers assembled an Assessment Team comprised of practitioners and academics from Washington, Oregon and Idaho.

The Assessment Team conducted 206 semi-structured interviews with individuals selected for their knowledge of, engagement in, and/or concern for salmon …

Complements To The Taxonomy Of Some Amazonian Scorpions (Scorpiones: Buthidae), Rolando Teruel, František Kovařík, Graeme Lowe, Stefan Friedrich

Euscorpius

We describe and illustrate in detail the previously unknown adult male of Ananteris ashaninka Kovařík, Teruel, Lowe et Friedrich, 2015, based upon a specimen recently captured at the type locality. In addition, the taxonomic status of three Amazonian species of the genus Tityus C. L. Koch, 1836, is reevaluated and all are restored from unjustified synonymies: Tityus carolineae Kovařík, Teruel, Cozijn et Seiter, 2013, Tityus dillerorum Kovařík, Teruel, Lowe et Friedrich, 2015, and Tityus wachteli Kovařík, Teruel, Lowe et Friedrich, 2015.

Strong Population Structure Deduced From Genetics, Otolith Chemistry And Parasite Abundances Explains Vulnerability To Localized Fishery Collapse In A Large Sciaenid Fish, Protonibea Diacanthus, Laura Taillebois, Diane P. Barton, David Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine Dudgeon, Safia Maher, Jennifer Ovenden

Fisheries Research Articles

As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localized declines in the abundance of this species have been observed, highlighting the urgent requirement by managers …

Exploring The Impact Of Olfaction On Short-Term And Long-Term Maternal Recognition In Peromyscus Californicus, Mariah F. Conley

Honors Projects

Previous studies have established a connection between social behavior and olfaction, in that as anosmia causes a decrease in perception of social cues, social behavior itself decreases. Studies investigating maternal behavior specifically have focused on foster care, in which the behaviors formed during parturition are conserved and displayed with unrelated pups. The combination of long-term retention of maternal behavior, maternal recognition, and olfaction has yet to be explored. In this study, I induced anosmia in Peromyscus californicus, a monogamous, biparental species, and analyzed their behavior with their own pups and with foreign pups in the days after birth, as well …

Body Condition Of Endangered Humpback Chub In Relation To Temperature And Discharge In The Lower Colorado River, Forest P. Hayes, Michael J. Dodrill, Brandon S. Gerig, Colton Finch, William E. Pine Iii

Watershed Sciences Faculty Publications

Determining the population status of endangered Humpback Chub Gila cypha is a major component of the adaptive management program designed to inform operation of Glen Canyon Dam upstream from Grand Canyon, Arizona. In recent decades, resource managers have identified a portfolio of management actions (with intermittent implementation) to promote population recovery of Humpback Chub, including nonnative fish removal, changes in water release volumes and discharge ramping schedules, and reductions in hydropower peaking operations. The Humpback Chub population in Grand Canyon has increased over this same period, causal factors for which are unclear. We took advantage of unusual hydrology in the …

Cost Of Feed Per Pound Of Gain In Cal Poly's Dairy Calves, Kayle Anna Phelan

Agricultural Education and Communication

California is ranked one of the top five states in the United States for dairy production. It produces approximately 40 billion pounds of milk per year for US production. California’s dairy industry is not only the largest milk producer in the nation, but it is also the most financially prominent in the agricultural industry. This industry lead is purely because of its careful management practices. The way calves are raised depend on the resources used, the natural environment present, and the operation of the dairy farm. Essentially, there are numerous ways to care for a cow and calf. However, the …

Winter Diet Of Bobolink, A Long-Distance Migratory Grassland Bird, Inferred From Feather Isotopes, Rosalind B. Renfrew, Jason M. Hill, Daniel H. Kim, Christopher Romanek, Noah G. Perlut

Environmental Studies Faculty Publications

Effective conservation of migratory bird populations depends on advancements in our understanding of processes throughout the life cycle. Fundamental information about wintering ecology (e.g., habitat use and diet composition) remains limited, which limits assessment of threats to populations during winter. Bobolink (Dolichonyx oryzivorus) is a year-round grassland obligate and Nearctic-Neotropical migrant that undergoes 2 complete molts each year, including a complete prealternate molt on the South American wintering grounds. This unusual winter molt provides a rare opportunity to examine, using stable isotope analysis, the timing and contribution of foraging resources in the Bobolink diet prior to northbound migration …

Characterizing Growth And Condition Of Endangered Humpback Chub In The Lower Colorado River, William E. Pine Iii, Brandon S. Gerig, Colton Finch

Watershed Sciences Faculty Publications

This paper is a preface to the two papers that follow in this issue. The two papers (by Pine et al. and Hayes et al.) use long-term fish sampling data from ongoing Humpback Chub monitoring efforts and archival otolith samples (from museums) collected in the lower Colorado and Little Colorado Rivers during periods of both cold- and warm-water conditions to assess whether Humpback Chub growth characteristics may have responded to changes in water temperature. Growth patterns are often of interest to resource managers because growth integrates a large range of environmental and ecological factors, including habitat conditions. Together, these papers …

The Recovery Of Protein From Egg Yolk Protein Extraction Granule Byproduct, Irene Jennifer Kaufman

Master's Theses

In addition to proving an excellent source of nutrients, eggs are used in the food, cosmetic, and biotechnology industries for their rheological and bioactive properties. Much of the potential for the added value is in individual components of the egg, rather than the whole egg. At low speed centrifugation, yolk separates into two distinct fractions—granules and plasma. It is becoming increasingly popular in the industry to remove the plasma fraction of the egg yolk to use for its livetins, particularly immunoglobulin Y, leaving behind a granule by-product (“yellow cake”). Previous research has shown potential added-value from the granule fraction, especially …

Growth Of Endangered Humpback Chub In Relation To Temperature And Discharge In The Lower Colorado River, W. E. Pine Iii, K. Limburg, B. Gerig, Colton Finch, D. Chagaris, L. Coggins, D. Speas, D. A. Hendrickson

Watershed Sciences Faculty Publications

Assessments of growth can provide information needed to understand how fish populations respond to changing environmental conditions and management actions, including ecosystem experimentation. We estimated growth rates and parameter uncertainty from otoliths of endangered Humpback Chub Gila cypha from the Colorado River in Grand Canyon, Arizona. We then compared growth of Humpback Chub , age 2 that were 1) occupying the mainstem Colorado River during a period of variable discharge and cooler water temperatures (1980–1998; epoch 1), 2) occupying the Colorado River during a period of moderate discharge variability and warmer water (2001–2011; epoch 2), and 3) occupying the unregulated …

Behavioral Responses Of Pacific Lamprey To Alarm Cues, Laurie L. Porter, Michael C. Hayes, Aaron D. Jackson, Brian J. Burke, Mary L. Moser, R. Steven Wagner

All Faculty Scholarship for the College of the Sciences

Pacific lamprey (Entosphenus tridentatus), an anadromous ectoparasite, faces several challenges during adult migration to spawning grounds. Developingmethods to address these challenges is critical to the success of ongoing conservation efforts. The challenges are diverse, and include anthropogenic alterations to the ecosystem resulting in loss of habitat, impassable barriers such as dams, climate change impacts, and altered predator fields. We conducted a behavioral study to understand how adult migrating Pacific lamprey respond to potential alarm cues: White Sturgeon (Acipenser transmontanus), human saliva, decayed Pacific lamprey, and river otter (Lontra canadensis). Research has shown that some species of lamprey can be guided …