Animal Sciences Commons^™

A Method For Characterizing Disease Emergence Curves From Paired Pathogen Detection And Serology Data, Joshua Hewitt, Grete Wilson-Henjum, Derek T. Collins, Jourdan M. Ringenberg, Christopher A. Quintanal, Robert Pleszewski, Jeffrey C. Chandler, Thomas J. Deliberto, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

1. Wildlife disease surveillance programs and research studies track infection and identify risk factors for wild populations, humans and agriculture. Often, several types of samples are collected from individuals to provide more complete information about an animal's infection history. Methods that jointly analyse multiple data streams to study disease emergence and drivers of infection via epidemiological process models remain underdeveloped. Joint-analysis methods can more thoroughly analyse all available data, more precisely quantifying epidemic processes, outbreak status, and risks.

2. We contribute a paired data modelling approach that analyses multiple samples from individuals. We use ‘characterization maps’ to link paired data …

Comparing Efficiencies Of Population Control Methods For Responding To Introductions Of Transboundary Animal Diseases In Wild Pigs, Nathan P. Snow, Benjamin Smith, Michael J. Lavelle, Michael P. Glow, Kayleigh Chalkowski, Bruce R. Leland, Sarah Sherburne, Justin W. Fischer, Keely J. Kohen, Seth M. Cook, Hatton Smith, Kurt C. Vercauteren, Ryan S. Miller, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Introductions of transboundary animal diseases (TADs) into free-ranging wildlife can be difficult to control and devastating for domestic livestock trade. Combating a new TAD introduction in wildlife with an emergency response requires quickly limiting spread of the disease by intensely removing wild animals within a contiguous area. In the case of African swine fever virus (ASFv) in wild pigs (Sus scrofa), which has been spreading in many regions of the world, there is little information on the time- and cost-efficiency of methods for intensively and consistently culling wild pigs and recovering carcasses in an emergency response scenario. We compared the …

Temporal And Spatial Influences On Fawn Summer Survival In Pronghorn Populations: Management Implications From Noninvasive Monitoring, Cole A. Bleke, Eric M. Gese, Juan J. Villalba, Shane B. Roberts, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Monitoring vital rates allowsmanagers to estimate trends in growth rates of ungulate populations. However, connecting the influence of nutrition on ungulate demography is challenging. Noninvasive sampling offers a low-cost, low-effort alternative for measuring nutritional indices, allowing for an increased understanding of the mechanistic relationships between environmental factors, nutrition, and specific population vital rates. We examined the temporal influence of intrinsic and extrinsic factors on pronghorn (Antilocapra americana) fawn recruitment. We collected fresh fecal samples from adult female pronghorn in five subpopulations spanning three sampling periods associated with critical maternal life-history stages (late gestation, early lactation, breeding season) for …

Susceptibilities And Viral Shedding Of Peridomestic Wildlife Infected With Clade 2.3.4.4b Highly Pathogenic Avian Influenza Virus (H5n1), J. Jeffrey Root, Stephanie M. Porter, Julianna B. Lenoch, Jeremy W. Ellis, Angela M. Bosco-Lauth

United States Department of Agriculture Wildlife Services: Staff Publications

We tested the ability of six peridomestic wildlife species to replicate a highly pathogenic (HP) clade 2.3.4.4b AIV (H5N1) isolated in the United States during 2022. All tested species replicated and shed virus, at least to some degree. Of the six species evaluated (house sparrows (Passer domesticus), European starlings (Sturnus vulgaris), feral pigeons (Columba livia), striped skunks (Mephitis mephitis), Virginia opossums (Didelphis virginiana), and cottontails (Sylvilagus sp.)), striped skunks and Virginia opossums shed the highest viral titers of 106.3 PFU/mL and 105.0 PFU/mL, respectively. Overall, the results of this …

Chronic Wasting Disease Effects On A Breeding Season Behavior In White-Tailed Deer (Odocoileus Virginianus), Miranda Hsiang-Ning Jacobson Huang, Stephen Demarais, Bronson K. Strickland, Allan Houston, Alejandro Banda, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Wildlife disease outbreaks can lead to population declines, which are usually attributed to increased direct or indirect mortality. Alternatively, behavior associated with sickness can lead to social isolation, potentially decreasing fitness of affected individuals. A useful case study to examine this dynamic is chronic wasting disease (CWD), a neurological disease of cervids, known to affect behavior and movement. In this study, we monitored scraping, a White-tailed Deer (Odocoileus virginianus; WTD) breeding season behavior, in an area of high CWD prevalence to determine if this reproductive behavior is affected by CWD. At 107 scrape sites, we detected 3,063 scrape interactions and …

Torque Teno Sus Virus 1: A Potential Surrogate Pathogen To Study Pig-Transmitted Transboundary Animal Diseases, Xiaolong Li, Brandon M. Parker, Raoul K. Boughton, James C. Beasley, Timothy J. Smyser, James D. Austin, Kim M. Pepin, Ryan S. Miller, Kurt C. Vercauteren, Samantha M. Wisely

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding the epidemiology and transmission dynamics of transboundary animal diseases (TADs) among wild pigs (Sus scrofa) will aid in preventing the introduction or containment of TADs among wild populations. Given the challenges associated with studying TADs in free-ranging populations, a surrogate pathogen system may predict how pathogens may circulate and be maintained within wild free-ranging swine populations, how they may spill over into domestic populations, and how management actions may impact transmission. We assessed the suitability of Torque teno sus virus 1 (TTSuV1) to serve as a surrogate pathogen for molecular epidemiological studies in wild pigs by investigating …

Common Grackle (Quiscalus Quiscula) Predation Of A Great Lakes Piping Plover (Charadrius Melodus) Nest And Its Conservation Implications, Jade R. Arneson, Dennis A. Peloquin, Thomas G. Prestby, Sarah P. Saunders

United States Department of Agriculture Wildlife Services: Staff Publications

Common grackle (Quiscalus quiscula) was observed consuming eggs from an exclosed (protected) Great Lakes piping plover (Charadrius melodus) nest in the lower bay of Green Bay, Lake Michigan in Wisconsin, USA during June 2023. The observation, captured by a trail camera, is the first photographic documentation of grackle predation in any of the three piping plover breeding populations. This behavior adds common grackle to the suite of egg predators and has critical implications for this shorebird species, particularly in the Great Lakes region where piping plover is listed as federally endangered and common grackles are relatively …

Tracking Sero-Molecular Trends Of Swine Brucellosis In Hawai'i And The Central Pacific, Thi Hai Au La, Ian A. Mcmillan, Prashant Dahal, Andrew H. Burger, Mahdi Belcaid, Darrin M. Phelps, Samuel M. Goldstein, Vienna R. Brown, Michael H. Norris

United States Department of Agriculture Wildlife Services: Staff Publications

Introduction

Brucellosis is a zoonotic disease of mammals caused by bacterial species of the Brucella genus. The reservoir for disease is typically mammals, with species of Brucella found infecting amphibians, bats, and marine mammals. Brucella spp. can pass directly to humans through contact with infected animals or their products. Brucella spp. can cause chronic debilitating infections in mammals, including humans, and is associated with spontaneous abortions in infected animals, causing reduced fecundity. In Hawai‘i, terrestrial species that could harbor Brucella spp. include swine, cattle, horses, and axis deer among others. The numerous feral swine in Hawai‘i are known to carry …

Trichinella Murrelli Identified In Red Foxes (Vulpes Vulpes) In Pennsylvania, Usa, Jitender Dubey, Peter C. Thompson, Larissa S. De Araujo, Aditya Gupta, Sasha Kay, Oliver C. H. Kwok, Jaquin Battle, Kyle R. Van Why, Justin D. Brown, Benjamin Rosenthal

United States Department of Agriculture Wildlife Services: Staff Publications

Trichinella infections have been eliminated from pork where pigs are raised in biosecure facilities, but wildlife infections persist. Trichinella murrelli is the primary zoonotic species in wild carnivores in the United States, having been identified in several species of omnivores and carnivores. Here, we document its occurrence in seven of 21 (33.3%) red foxes (Vulpes vulpes) from six counties in Pennsylvania. Encysted Trichinella juveniles were detected in muscle squashes (< 5 g samples) of all seven foxes, and in histological sections of the tongue and limb muscle of three. Juveniles from muscle squashes were pooled and tested in a multiplex PCR capable of differentiating all Trichinella species native to the USA; all samples contained only T. murrelli. This is the first identification of T. murrelli in red foxes from Pennsylvania, …

The Influence Of Social And Spatial Processes On The Epidemiology Of Environmentally Transmitted Pathogens In Wildlife: Implications For Management, Aakash Pandey, Chris Wojan, Abigail Feuka, Meggan E. Craft, Kezia Manlove, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Social and spatial structures of host populations play important roles in pathogen transmission. For environmentally transmitted pathogens, the host space use interacts with both the host social structure and the pathogen’s environmental persistence (which determines the timelag across which two hosts can transmit). Together, these factors shape the epidemiological dynamics of environmentally transmitted pathogens. While the importance of both social and spatial structures and environmental pathogen persistence has long been recognized in epidemiology, they are often considered separately. A better understanding of how these factors interact to determine disease dynamics is required for developing robust surveillance and management strategies. Here, …

Bayesian Integrated Species Distribution Models For Hierarchical Resource Selection By A Soaring Bird, Ryo Ogawa, Guiming Wang, L. Wes Burger, Bronson Strickland, J. Brian Davis, Fred L. Cunningham

United States Department of Agriculture Wildlife Services: Staff Publications

Migratory birds exhibit seasonal geographic range (hereafter, range) dynamics during the annual cycle. Few studies have examined how migratory birds select their habitats for range occupancy at the species level and space use at the individual level simultaneously. We hypothesized that environmental variables directly related to fitness components would affect the range occupancy probabilities of migrants, whereas environment variables related to movements and flights would affect the space use intensities of migrants. We built Bayesian integrated species distribution models (ISDMs) to evaluate the effects of climate conditions, wind conditions, and landcover compositions on the seasonal range dynamics of American white …

Agricultural And Ecological Resources Safeguarded By The Prevention Of Wild Pig Population Expansion, Colin Jareb, Kim M. Pepin, Ryan S. Miller, Stephanie A. Shwiff, Sophie C. Mckee

United States Department of Agriculture Wildlife Services: Staff Publications

Wild pigs (Sus scrofa) are one of the most destructive invasive species in the United States, known for causing extensive damage to agricultural commodities, natural resources, and property, and for transmitting diseases to livestock. Following the establishment of the National Feral Swine Damage Management Program (NFSDMP) in 2014, the expansion of wild pig populations has been successfully slowed. This paper combines two modeling approaches across eight separate models to characterize the expansion of wild pig populations in the absence of intervention by the NFSDMP and forecasts the value of a subset of resources safeguarded from the threat of …

Raccoon Density Estimation From Camera Traps For Raccoon Rabies Management, Amy J. Davis, Wesley C. Dixon, Richard B. Chipman, Amy T. Gilbert, Jacob E. Hill, James C. Beasley, Olin E. Rhodes Jr., Guha Dharmarajan

United States Department of Agriculture Wildlife Services: Staff Publications

Density estimation for unmarked animals is particularly challenging, yet density estimates are often necessary for effective wildlife management. Raccoons (Procyon lotor) are the primary terrestrial wildlife reservoir for Lyssavirus rabies within the United States. The raccoon rabies variant (RRVV) is actively managed at landscape scales using oral rabies vaccination (ORV) within the eastern United States. To effectively manage RRVV, it is important to know the density of raccoons to appropriately scale the density of ORV baits distributed on the landscape. We compared methods to estimate raccoon densities from camera‐trap data versus more intensive capture‐mark‐recapture (CMR) estimates across 2 …

Surveillance Of Highly Pathogenic Avian Influenza Virus In Wild Canids From Pennsylvania, Usa, Kevin D. Niedringhaus, Taylor C. Chan, Ashley Mcdowell, Lauren Mxwell, Madison Stevens, Lane Potts, Erica Miller, Eman Anis, Kyle Van Why, Thomas Keller, David Stallknecht, Rebecca L. Poulson, Kaitlyn Bahrs, Justin D. Brown

United States Department of Agriculture Wildlife Services: Staff Publications

The avian influenza virus is a global pathogen with significant health and economic implications. While primarily a pathogen of wild and domestic birds, recent outbreaks of the H5N1 highly pathogenic avian influenza virus (HPAIV) clade 2.3.4.4b have caused mortality in a wide variety of mammals, including members of the Canidae family, on multiple continents. Despite sporadic mortality events globally, the epidemiology and pathobiology of H5N1 HPAIV in wild canids remains poorly defined. During 2022–2024, 41 wild canid carcasses (diagnostic cases), including 23 red foxes and 18 gray foxes, were tested for the influenza A virus (IAV) via PCR, with five …

Rabies, Amy T. Gilbert, Christine Ellis

United States Department of Agriculture Wildlife Services: Staff Publications

Illustrated fact sheet on rabies.

Comparing Ionoregulation And Modes Of Nitrogen Excretion Across The Life Cycle Of Parasitic And Non-Parasitic Lamprey Species, Shannon Davidson

Theses and Dissertations (Comprehensive)

Abstract

Ionoregulation and nitrogenous waste (N-waste) metabolism in fishes has been extensively documented in teleosts and elasmobranchs, but less so in lampreys (Petromizontiformes). All lamprey species undergo metamorphosis which drastically changes their physiology and modes of feeding. However, differences in ionoregulatory mechanisms due to anadromous versus non anadromous life history strategies emerge following metamorphosis in different lamprey species. Furthermore, some species, such as anadromous juvenile sea lamprey (Petromyzon marinus), are parasitic and migrate to seawater (SW) to ingest blood protein from host fishes, while juveniles of freshwater (FW), non-parasitic species, such as the American brook lamprey …

Suitability Of Reintroduction As A Tool For The Conservation Of The Central American River Turtle (Dermatemys Mawii), Wesley O. Smith

Graduate Theses/Dissertations

The Central American River Turtle (Dermatemys mawii) has declined throughout its historical range to the point that it is critically endangered; the primary driver is overharvesting by humans for consumption. To help conserve this critically endangered turtle, a head-start program was established in Belize and introductions of head-started individuals have been considered to bolster populations. I released and studied hatchling and head-started juvenile Central American River Turtles during the summers of 2021 and 2022, respectively. The goal was to determine the suitability of hatchlings and juveniles for use in conservation reintroductions, along with elucidating aspects of the ecology …

Invasive Wild Pig (Sus Scrofa) Diets On Barrier Islands In The Southeastern United States, Vienna R. Canright, Antoinette J. Piaggio, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

Background

Biological invasions are a leading cause of reductions in global biodiversity. Islands are particularly sensitive to invasions, which often result in cascading impacts throughout island communities. Wild pigs (Sus scrofa) are globally invasive and pose threats to numerous taxa and ecosystems, particularly for islands where they have contributed to declines of many endemic species. However, the impacts of wild pig diet on the flora and fauna remain understudied in many island systems.

Results

We used DNA metabarcoding of wild pig fecal samples to quantify the seasonal diet composition of wild pigs on three barrier islands in the …

Characterizing Feral Swine Movement Across The Contiguous United States Using Neural Networks And Genetic Data, Rachael M. Giglio, Courtney F. Bowden, Ryan K. Brook, Antoinette J. Piaggio, Timothy J. Smyser

United States Department of Agriculture Wildlife Services: Staff Publications

Globalization has led to the frequent movement of species out of their native habitat. Some of these species become highly invasive and capable of profoundly altering invaded ecosystems. Feral swine (Sus scrofa × domesticus) are recognized as being among the most destructive invasive species, with populations established on all continents except Antarctica. Within the United States (US), feral swine are responsible for extensive crop damage, the destruction of native ecosystems, and the spread of disease. Purposeful human-mediated movement of feral swine has contributed to their rapid range expansion over the past 30 years. Patterns of deliberate introduction of …

Discovery Of A Novel Invasive Rodent Species On Wake Atoll With A Desert Southwest Usa Origin, Antoinette J. Piaggio, Eric Lanners, Daniel R. Taylor, Aaron B. Shiels, Marjorie Matocq, John Eisemann

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive species, particularly omnivorous rodents, have damaged island ecosystems around the world. The unique flora and fauna of island systems have typically not evolved with omnivorous rodents and are heavily impacted by their introduction. Wake Atoll of the southern Pacific Ocean is a 707-hectare coral island complex of three islands managed by the United States Department of Defense (DoD). DoD restricts civilian access to the atoll but aircraft and seacraft regularly visit the island to transport military equipment and to sustain the year-round military and contractor personnel stationed on the atoll. Wake Atoll had been invaded by Rattus rattus complex …

Unsung Heroes In Conservation: Evaluating The Limitations Faced By New England Wildlife Rehabilitation Centers And Proposing Solutions For Their Support And Recognition, Shaylee M. Sarmiento

Honors Theses and Capstones

Wildlife rehabilitation is an often-unacknowledged practice within the overarching field of wildlife protection and conservation. This practice involves the treatment and hopeful release of wild animals affected by various ailments. With the continued expansion of and interest in the field, it could be assumed that wildlife rehabilitation is supported and funded by government bodies, but this is not the case. Because of the lack of funding and resources, many wildlife rehabilitation centers cannot achieve their full rehabilitative potential and expand their reach in the conservation world. Additionally, an absence of support leads critics to question the ethical standards of wildlife …

An Updated Outline For Clearing And Staining Of Preserved Specimens, Sadie E. Smith

Honors Theses and Capstones

This protocol outlines a enhanced clearing and staining procedure for persevered specimens, focusing on the visualization of cartilage and bone in small taxa. With origins from O. Shultze's diaphonization methodology in 1897, the process of clearing and staining improves the clarity and contrast of intricate tissues. It is essential for studies in developmental biology, histology and anatomy. This protocol covers the key steps of the process while detailing the materials, solutions and estimated timeline for each step pertaining to specific taxa. The aim of the protocol is to standardize and provide guidance for procedures in the Biological Sciences department at …

Trends In Monitoring Of Australia’S Threatened Birds (1990–2020): Much Improved But Still Inadequate, Simon J. Verdon, Robert A. Davis, Ayesha Tulloch, Sarah M. Legge, David M. Watson, John C. Z. Woinarski, G. Barry Baker, Joris Driessen, Hayley M. Geyle, Hugh Possingham, Stephen T. Garnett

Research outputs 2022 to 2026

Monitoring is vital to conservation, enabling conservation scientists to detect population declines, identify threats and measure the effectiveness of interventions. However, not all threatened taxa are monitored, monitoring quality is variable, and the various components of monitoring are likely to differ in their rates of improvement over time. We assessed the presence of monitoring and monitoring quality, using a range of metrics, for all Australia’s threatened bird taxa from 1990 to 2020 (four assessments spanning 30 years). We used our assessments to understand decadal trends in the number of taxa monitored; monitoring quality; and the groups that conduct monitoring. The …

Review On Locusta Migratoria Cinerascens (Fabricius, 1781)., Laib Djamel Eddine, Benzehra Abdelmadjid, Laib Imen, Aouzal Badis, Salah Akkal

Journal of Bioresource Management

The migratory locust, scientifically known as Locusta migratoria (Linnaeus, 1758), is a captivating insect species that has drawn the interest of scientists, farmers, and the general public. Recognized for its notorious swarming behavior, this insect has the potential to cause extensive damage to crops, leading to agricultural plagues and food shortages. However, beyond its reputation as a pest, the migratory locust is a subject of scientific fascination due to its intricate life cycle, remarkable ability to undergo rapid and dramatic transformations, and its crucial role within the ecosystems it inhabits. This review delves into various facets of L. migratoria, including …

Establishment Of Hand Rearing Protocols With Respect To Feeding, Physiological And Behavioral Aspects In Abandoned Lion Cubs At Safari Zoo Lahore, Muhammad Azhar, Bushra Nisar Khan, Fahd Haseeb, Muhammad Hassan Saleem, Abdul Rehman, Zahid Iqbal Khan, Muhammad Rizwan Khan

Journal of Bioresource Management

African lion (Panthera leo) being most attractive but vulnerable exhibit of zoos and safaris; need particular attention to breeding plans. At captive sites, lioness neglects newborns commonly; at that stage, hand rearing is preferred. This study will highlight the best practices for hand-rearing lion cubs, including knowledge of early medical issues along with their treatment during the first 4 months of growth. 34 lions (08Male: 17Females: 9Cubs) were housed on 15 acres during 2019-21 at Safari Zoo Lahore. A total of 04 lionesses were found entirely abandoned to 05 newborns (03 males & 02 females). The hand-rearing period …

The Role Of Cooperatives And Farmer-Industry Linkages In The Evolution Of Tanga’S Dairy Innovation System, Hezron Makundi, Heric Thomas

Journal of Humanities and Social Sciences

This study investigated the development of Tanga’s dairy innovation system and its role in promoting and maintaining relationships between farmers, the industry, and cooperative unions; employing a case study approach. The main objective was to assess the role of cooperatives in forging farmer-industry linkages and in improving dairy industry innovations. 100 dairy producers in Tanga participated in the survey that led to the paper. A questionnaire was used to collect data from randomly selected farmers. Furthermore, 20 key informant interviews were conducted with various participants, including the Tanga Dairy Cooperative Union livestock extension service providers. Also, one Focus Group Discussion …

Utilizing An Extract From Endophytic Fungus, Alternaria Alternata, Isolated From Ricinus Communis L. Leaves As A Biological Agent For Controlling The Migratory Locust In Algeria, Laib Djamel Eddine, Benzehra Abdelmadjid, Laib Imen, Aouzal Badis, Akkal Salah

Journal of Bioresource Management

In this research, we aimed to explore the insecticidal potential of Alternaria alternata, an endophytic fungus derived from the leaves of castor oil plant. To test its insecticidal efficacy, various doses of A. alternata mycoextract were administered to Locusta migratoria L. through both topical and oral pathways. The findings revealed that the insects displayed the highest susceptibility to a concentration of 2 g/L, leading to an impressive mortality rate of 87.5 % and 93.75 % for topical and oral administrations, in the same order. The extract displayed remarkable insecticidal properties, demonstrating LC50 values of 1.09 g/L for the topical …

Oregon State Rank Assessment For Pit Roach (Hesperoleucus Mitrulus), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for pit roach (Hesperoleucus mitrulus) using NatureServe methodology, 2023.

Oregon State Rank Assessment For Margined Sculpin (Cottus Marginatus), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for margined sculpin (Cottus marginatus) using NatureServe methodology, 2023.

Tropicalization Fact Sheet, Linda Walters, Carla Perscky

CEELAB Outreach Materials

The goal of this 2-sided fact sheet is to introduce the topic of tropicalization along our coastlines to young audiences and their families. Tropicalization is defined as, "the transformation of ecosystems by tropical organisms that migrate towards the poles in response to warming minimum winter temperatures."