Agriculture Commons^™

Metagenomic Sequencing For Early Detection Of Future Engineered Pandemics: Foreshadowing The Privacy Challenge, Nir Eyal, Bridget Williams, Kevin M. Esvelt, Jane R. Bambauer

UF Law Faculty Publications

In this commentary, we imagine how a global system of metagenomic sequencing could be governed in order to reap the benefits and manage the risks. Global institutional engineers and their academic partners would need to develop a new governance model to ensure that all partners involved in a global metagenomic surveillance system cooperate as needed.

Analyzing Food Sources And Food Insecurity Of Kichwa Farming Families In The Ecuadorian Amazon, Reina Watanabe

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

While the right to food is internationally recognized and the United Nations established the sustainable development goal to end hunger and achieve food security by 2030, many households remain without consistent access to food in 2024. In Latin America, approximately 4 in 10 households were reported as food insecure in 2020 with higher rates in rural and indigenous communities. Rural areas, which have great overlap with indigenous communities in Ecuador, experience disproportionately high levels of poverty and food insecurity compared to urban areas. The most populous indigenous nationality in the Ecuadorian Amazon and the participants of this study are the …

Soybean Seed Yield Distribution Within The Canopy As Affected By Nitrogen Supply, Lucia Bonfanti

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soybean [Glycine max (L.) Merr.] seed yield is influenced by the seasonal availability of resources (i.e., nutrients, light, and water). While nitrogen (N) supply is becoming a soybean yield-limiting factor, the N-induced effect in seed yield components is still unclear. The objective of this research was to assess the effect of N supply on soybean yield components distribution within the canopy. A Full-N treatment, which provided the crop with ample N supply, was compared against a Zero-N treatment in which the crop relied on soil N and biological N fixation at nine high-yielding irrigated soybean environments in Nebraska, with …

Leveraging Within-Field Spatial Variability To Optimize Soybean Yield, Seed Quality, And Profitability, Marina Marly Dalla Betta

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Optimizing yield and seed quality in soybean production is critical for both profitability and meeting market demands. However, within-field variability in soil properties poses a challenge in determining optimal management strategies to maximize soybean yield, seed quality, and profitability. This work aimed to evaluate the spatial variability of soybean fields to optimize soybean seeding rates, seed quality, and profitability. Two case studies were used to carry over this research. The first study looked at the optimal economical site-specific soybean seeding rates using 11 on-farm precision experiments across Nebraska. The second study looked at the protein and oil variability within 22 …

2024 Seeded Watermelon Cultivar Evaluation In Indiana, Wenjing Guan

Midwest Vegetable Trial Reports

The annual watermelon cultivar evaluation trial is conducted at Southwest Purdue Agricultural Center (SWPAC) in Vincennes, Indiana. It evaluates yield, fruit quality, and overall plant performance of commercial watermelon cultivars and advanced breeding lines. Purdue Extension and seed companies financially support the trial. The 2024 seeded watermelon cultivar trial evaluated 15 cultivars.

Developing Holistic And Reduced Fertilization Guidelines For Southeastern Peach (Prunus Persica (L.) Batsch) Orchards, Richardson Bien-Aime

All Theses

Peach production in the southeastern United States requires optimizing fertilization practices to balance economic sustainability and environmental health. Current guidelines may overlook rootstock-specific nutrient requirements and fail to align with orchard-specific conditions, often resulting in overfertilization, increased costs, and environmental risks. This study, conducted at Clemson University’s Musser Fruit Research Center during 2023 and 2024, aimed to refine fertilization practices through two complementary experiments. The first experiment investigated how three rootstocks, ’MP-29’, Lovell, and Guardian, influence nutrient dynamics of ‘Carored’ peach trees. Nutrient concentrations were measured in various tree organs, including leaves, pruned wood, thinned fruitlets, and harvested fruits, along …

2024 Standard-Sized Seedless Watermelon Cultivar Evaluation In Indiana, Wenjing Guan

Midwest Vegetable Trial Reports

No abstract provided.

Primary Industries Education Foundation Australia (Piefa) Storm And Flood Industry Recovery Program: Evaluation Report, Tamara Van Der Zant, Katherine Dix

Program monitoring and evaluation

Despite the growing diversity of careers in Primary Industries, young peoples’ pursuit of agricultural careers is often hampered by outdated perceptions of the sector and its opportunities. As Primary Industries adapt to the threat of natural disasters by turning to scientific and technological solutions, a diverse, highly skilled workforce will be required. In the wake of the devastating impacts of storm and floods in early 2021 across New South Wales, the Storm and Flood Industry Recovery Program (SFIRP): Creating resilience through empowering school curriculums about primary industries careers project was developed. To aid the long-term recovery and resilience of the …

Rice Response To Struvite And Other Phosphorus Fertilizers In A Phosphorus-Deficient Soil Under Simulated Furrow-Irrigation, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Wastewater-recovered phosphorus (P), in the form of the mineral struvite (MgNH₄PO₄⋅6H₂O), may provide a sustainable alternative to decreasing rock-phosphate reserves. Struvite can be generated via precipitation methods, potentially reducing the amount of P runoff to aquatic ecosystems. The objective of this greenhouse tub study was to evaluate the effects of chemically- and electrochemically precipitated struvite (CPST and ECST, respectively) on above- and belowground plant response in a hybrid rice (Oryza sativa) cultivar grown using furrow-irrigation compared to other common fertilizer-P sources [i.e., triple super phosphate (TSP) and diammonium phosphate (DAP)]. Rice was …

Induced Systemic Resistance Against Nematodes By Plant Growth-Promoting Microbes In Potatoes, Cole Grannan

Master's Theses

Biofertilizers consist of plant growth-promoting microorganisms that establish symbiotic relationships with plant roots and stems. These beneficial microbes play a crucial role in enhancing plant defenses against various threats including insects, nematodes, and microbial pathogens. The purpose of this study was to investigate the effectiveness of two fungal biofertilizers (an endophytic strain of Beauveria bassiana (BA) and a mixture of arbuscular mycorrhizal (AM) fungi), specifically their ability to induce systemic resistance against plant- parasitic nematodes (PPNs) in potatoes (Solanum tuberosum cv. Masquerade) under controlled greenhouse conditions. The study utilized soil collected from Colorado State University’s San Luis Valley (SLV) Research …

2024 Personal-Sized Seedless Watermelon Cultivar Evaluation In Indiana, Wenjing Guan

Midwest Vegetable Trial Reports

The annual watermelon cultivar evaluation trial is conducted at Southwest Purdue Agricultural Center (SWPAC) in Vincennes, Indiana. It evaluates yield, fruit quality, and overall plant performance of commercial watermelon cultivars and advanced breeding lines. Purdue Extension and seed companies financially support the trial. The 2024 personal-sized triploid watermelon cultivar trial evaluated 18 cultivars.

Evaluating The Duckweeds Lemna Minor And Spirodela Polyrhiza As Alternative Aquatic Hosts For The Spread Of The Bacterial Wilt Pathogen, Ralstonia Solanacearum, Irelynn Smith

Honors Theses

Ralstonia solanacearum is a plant pathogen that causes bacterial wilt disease in major crops such as tomatoes and potatoes. Recently, this bacterium was discovered in floating pennywort (Hydrocotyle ranunculoides) and Pennsylvania smartweed (Polygonum pennysylvanicum), two previously unsuspected aquatic plants. Duckweed is an aquatic plant with a high level of resilience and short doubling time. Common duckweed (Lemna minor) has previously demonstrated its capability as a versatile high-yield infection model for other types of pathogenic bacteria. Given this newfound branch of aquatic hosts and the fact that duckweed is a common pond weed previously identified in several ponds located nearby infected …

Morphological And Physiological Changes Of Katuray (Sesbania Grandiflora) During Seed Maturation [Research Note], Alangelico San Pascual, Lucille Elna De Guzman, Maurice Gravidez, Elijah Estante

The Philippine Agricultural Scientist

Katuray (Sesbania grandiflora), whose flowers are consumed as steamed vegetables, is an important green manure crop in the Philippines. Understanding different processes leading to seed maturity can aid in determining S. grandiflora’s seed quality, preventing premature harvesting for seed increase, ensuring efficient propagation and production of seedlings, and breeding new varieties of this crop. Multiple flowers were tagged, and three to five pods were collected five days after anthesis (DAA) and at a five-day interval thereafter until 100% germination was achieved. Seed size, moisture content (MC), dry weight, germination percentage, and embryo development were observed and recorded. Seed length was …

Comparative Analysis Of Household Food And Nutrition Security In Selected Philippine Urban And Rural Households During The Covid-19 Pandemic, Jay-Al Reyes, Julieta Delosreyes

The Philippine Agricultural Scientist

This study analyzed the food and nutrition security of selected urban and rural households in Pili, Camarines Sur, Philippines during the COVID-19 pandemic. It determined the prevalence of food insecurity among the selected urban and rural households, analyzed the determinants of food insecurity in these households, determined the prevalence of malnutrition, and assessed the relationship between the households’ food security and nutrition security. Primary data from a survey of 185 urban and rural households and secondary data from the Electronic Operation Timbang Plus (e-OPT) Tool were used to determine the prevalence of food insecurity using the Food Insecurity Experience Scale …

Bioactivity And Synergism Of Tagpo (Ardisia Tomentosa) Molluscicidal Extracts, Darwin C. Gomez, Grechelle Socias, Rosemarie Galanza, Florlyn C. Gayas Ma., Fe T. Piedad, Brian John Sarno

The Philippine Agricultural Scientist

Population control of golden apple snails (GAS, Pomacea canaliculata) is beneficial in rice farming; however, the associated control measures can be expensive and time-consuming. Currently, farmers use synthetic molluscicides such as niclosamide to control GAS infestation, but this has some drawbacks. For example, niclosamide has broad toxicity to non-target organisms and negatively affects the growth of rice seedlings. Plant extracts with potent bioactivity and low toxicity to non-target organisms are attractive alternatives to synthetic molluscicides. In this study, the bioactivity of the crude fruit extract of tagpo (Ardisia tomentosa) was assessed against GAS and tilapia (Oreochromis niloticus) fries. The potential …

Site Position, Tillage, And Soil Depth Effects On Soil Properties In A Furrow-Irrigated Rice Field On A Silt-Loam Soil, Hannah Nobles, Kristofor Brye, Diego Della Lunga

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

The fundamental agronomic shift from conventional agricultural methods to conservation agriculture relies on understanding soil nutrient stratification with depth and under different tillage treatments. Assessment of nutrient stratification in the dynamic conditions of furrow-irrigated rice (Oryza sativa) systems in eastern Arkansas is absent. The objective of this study was to evaluate the effects of tillage [i.e., conventional tillage (CT) and no tillage (NT], site position (i.e., up-, mid-, and down-slope), soil depth interval (i.e., 0-10 and 10-20 cm), and their interaction on the difference (i.e., end of the season minus beginning of the season) in select soil chemical …

Comparison Of Statistical And Machine Learning Genomic Prediction Methods In Plant Breeding: Case Studies In Maize And Soybean, Igor Kuivjogi Fernandes

Graduate Theses and Dissertations

Plant breeding is essential to increase genetic gain and food production worldwide. This study was conducted to evaluate new ways to use machine learning (ML) to tackle plant breeding challenges, where two ideas were tested — the first chapter focuses on how to combine genetic and environmental data using ML to improve the prediction of maize grain yield in multi-environment trials, while the second chapter centers on how to couple feature selection of molecular markers with ML to enhance prediction of yield in soybean, and, in both cases, ML approaches were compared to well-established statistical methods greatly adopted by the …

Guiding Wildlife: Evaluating Wildlife Exit Designs And Sensor Lights For Safer Highways In South Texas, Rupesh Maharjan

Theses and Dissertations

Roadside exclusionary fencing is more prevalent on highways to prevent wildlife-vehicle collisions. Although it can mitigate wildlife road mortality by limiting their access to the road, it can also create a barrier for wildlife stranded within the right-of-way. In State Highway 100 of Texas, the Texas Department of Transportation installed ten wildlife exits to allow wildlife to escape the fenced roadway, and a pair of sensor lights on 13 wildlife guards (WGs) to scare off target species (bobcats and coyotes) from crossing the guards and accessing the roadway. In this study, the effectiveness of three wildlife exit (WE) designs were …

Implementing Organic Fertilization Practices To Improve Aloe Vera Growth And Soil Health In The Lower Rio Grande Valley, Isaiah Edward Jaramillo

Theses and Dissertations

Aloe vera (L.) (Aloe) Burm. f., is valued for its applications across the cosmetic, medicinal, and food industries due to its leaf gel. In the aloe industry, the extraction of gel from leaves generates significant quantities of organic waste, which presents an opportunity to repurpose this material as an amendment in aloe cultivation. While Aloe is renowned for its resilience, understanding the feasibility of using these organic shavings as a soil fertility amendment in aloe production is critical. This research aims to identify sustainable fertilization methods for Aloe that can maintain and/or improve crop yield while enhancing soil health. This …

Examining Hispanic Beginning Farmers And Ranchers In The Rio Grande Valley Through A Community Capitals Framework, Perla Kimberly Schrock

Theses and Dissertations

While existing literature addresses the experiences of beginning farmers and ranchers (BFR), there is a notable gap in research focused on Hispanic beginning farmers and ranchers (HBFR). This study aimed at exploring the unique experiences of HBFR in a predominantly Hispanic region, the Rio Grande Valley (RGV), employed the Community Capitals Framework (Flora et al., 2016). I conducted 16 semi-structured interviews with HBFR and local nonprofit organizations and federal employees, complemented by participant observations. Through thematic and content analysis of the interview transcripts, findings revealed valuable insights into the livelihoods of HBFR. Despite HBFR facing significant challenges, this study demonstrated …

Assessing Cover Crop Adoption Factors In The Rio Grande Valley Through A Social-Ecological Perspective, Mackenzie Feldman

Theses and Dissertations

Reducing agriculture’s negative environmental impacts is crucial for mitigating climate change (White, 2021). Cover crops– non-cash crops grown to benefit subsequent cash crops– can slow erosion, improve soil health, enhance water availability, control pests, and increase biodiversity. Despite these benefits, adoption rates remain low, prompting the USDA and other organizations to fund research on increasing their use. Most studies focus on the Midwest and Northeast, and emphasize individual factors over the relationship between structural factors and individual factors that impact farmers’ decisions to adopt cover crops. This USDA-funded study begins to fill this gap by exploring social-ecological factors and how …

Compact Solar-Powered Plasma Water Generator: Enhanced Germination Of Aged Seed With The Corona Dielectric Barrier Discharger, Yiting Xiao, Yang Tian, Haizheng Xiong, Ainong Shi, Jun Zhu

Biological and Agricultural Engineering Faculty Publications and Presentations

Seed aging adversely affects agricultural productivity by reducing germination rates and seedling vigor, leading to significant costs for seed banks and companies due to the need for frequent seed renewals. This study demonstrated the use of plasma-activated water (PAW), generated by a solar-powered corona dielectric barrier discharger, to enhance germination rates of spinach seeds that had been stored at 4 °C for 23 years. Treating seeds with PAW at 17 kV for 15 min improved germination (by 135%) and seedling growth compared to untreated seeds. Through detailed analysis, beneficial PAW properties for seed development were identified, and a molecular mechanism …

Sustainable Agriculture Practices And Economic Outcomes: Selected Ipm In Tomato And Cover Crop Inter-Seeding In Organic Corn In South Carolina, Rohini Sonti

All Theses

This two-chapter thesis focuses on the economic evaluation of integrating a combination of sustainable agricultural practices aimed at improving environmental resilience and farm profitability across both conventional and organic farming systems in South Carolina. The research study lays emphasis on two key areas: the use of Integrated Pest Management practices, specifically grafting and Anaerobic Soil Disinfestation (ASD) in tomato production and the inter- seeding of cover crops under different tillage systems in organic corn production.

The first chapter assesses the economic feasibility of two IPM practices: grafting and anaerobic soil disinfestation (ASD) in tomato production. Following the phase-out of methyl …

Investigating Consumer Perception And Wine Quality Impact On Alternative Packaging On Grape (Vitis), Mark Walker Bartz

Graduate Theses and Dissertations

The grape (Vitis species) and wine industry has major global economic impacts but faces issues with sustainability. The use of glass bottles for wine production is environmentally unsustainable due to energy-intensive manufacturing and poor recycling rates. However, wine consumers tend to associate glass bottles with higher quality over alternative wine packaging materials such as aluminum, polyethylene terephthalate (PET), and flexible bags/pouches. Since wine price and packaging influence consumers perception of wine quality, wine producers need to understand consumers to maximize profits. Thus, the overall objectives of this research were to investigate consumer perception and wine quality impact of alternative …

Relationship Between Host Genomics And Microbiomics In Beef Cattle, Andrew D. Lakamp

Department of Animal Science: Dissertations, Theses, and Student Research

As sequencing technology becomes more affordable and throughput increases, microbiome information is becoming more readily available. For beef cattle selection, microbial information has a variety of uses including being a target for genetic prediction or used as a means to explicitly describe additional phenotypic variability in other traits.

Infectious bovine keratoconjunctivitis (IBK), commonly known as pinkeye, is a disease that infects the ocular surface and surrounding tissue which is an animal health and producer economic concern. Vaccinations have shown to have variable effectiveness, while limited genetics studies have suggested that direct genetic selection for resistance would be slow. Therefore, an …

Examining Factors Of Variance In Energy Metabolism Of Dairy Cattle, Addison L. Carroll

Department of Animal Science: Dissertations, Theses, and Student Research

Variation is thought to occur in the use of dietary energy for production in dairy cattle. First, variance can be observed when new methane mitigation strategies are fed resulting in increased H₂ output potentially resulting in downstream effects on estimates of heat production via the Brouwer (1965) equation. Therefore, in chapter 3 a review was created to systematically describe the mathematics and theory behind the Brouwer equation, and rederive a heat production equation to integrate H₂ production. Results indicate heat production using the classical Brouwer equation (1965) relative to the rederived equation resulted in an overestimation of heat …

Impacts Of Annual Forage Management On Grazing Cattle Performance And Carrying Capacity, Shelby Davies Jenkins

Department of Animal Science: Dissertations, Theses, and Student Research

Rapid conversion of historical grasslands to cropland in recent history has led to limited perennial pasture availability and an increase in cost of pasture rent. Annual forages are an alternative grazing source. Many annual forages can grow and accumulate stockpile following summer harvest of wheat. Strip grazing is often suggested to increase grazing efficiency of stockpiled forages. To evaluate this, a stockpiled mixture of annual forages were either strip grazed or grazed continuously in the fall and winter. The mixture contained oats and rapeseed in the first year and a diverse warm season annual mixture in the second. Strip grazing …

Utilization Of Prosur Phr As A Novel Phosphate Alternative In Tumble, Inject, And Tumble Injection Marinated Chicken Breast, Sarah E. Johnson

Graduate Theses and Dissertations

Poultry is the most widely consumed meat protein worldwide for its health consideration, affordability, and versatility. Historically, the poultry industry has utilized numerous methods to improve meat quality most significantly, marination. Marination is practice commonly used in the industry by imparting various chemical functional ingredients that are known to enhance sensory characteristics such as tenderness, juiciness, and flavor. Various marination methods used in the industry including tumble, injection, and soaking. Ingredients, such as sodium chloride and phosphates are commonly used in the marination process. In recent years the industry has witnessed a shift in consumer preferences to “clean-label”. This trend …

The Bacterial Cell Wall Components Lipopolysaccharide And Peptidoglycan Initiate Divergent Local Tissue And Systemic Inflammatory Response Profiles In The Chicken Model, Kristen A. Byrne, Gisela F. Erf

Poultry Science Faculty Publications and Presentations

The innate immune system plays an important role in the early defense against pathogens. To better understand the chicken’s innate inflammatory responses, we concurrently examined the cellular responses at the injection site and in the blood following intradermal (i.d.) injections of lipopolysaccharide (LPS) or peptidoglycan (PGN) into the pulp of growing feathers (GFs). Both LPS from Gram-negative bacteria and PGN from Gram-positive bacteria are potent stimulators of innate inflammatory responses. The time-course study conducted revealed similarly elevated levels of heterophils and macrophages in injected GF-pulps during the first 24 h for both LPS and PGN. However, PGN also stimulated rapid …

Evaluation Of Industrial Hemp Cultivar And Biochar Rate To Remediate Heavy-Metal-Contaminated Soil From The Tar Creek Superfund Site, Usa, Dietrich V. Thurston, Kristofor R. Brye, David M. Miller, Philip A. Moore Jr., Donald M. Johnson, Mike Richardson

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Soil contamination by cadmium (Cd), lead (Pb), and zinc (Zn) at the Tar Creek superfund site in northeast Oklahoma, United States, remains a threat to the environment and local ecosystem. Phytoremediation with industrial hemp (Cannabis sativa L.) and the use of biochar (BC) have been independently shown to be effective methods to remediate heavy-metal-contaminated soils. The objective of this greenhouse study was to evaluate the effects of industrial hemp cultivar (‘Carmagnola’ and ‘Jinma’), biochar rate (0, 2, 5, and 10% by volume), soil contamination level (low, medium, and high), and their interactions on above- (AG) and belowground dry matter …