Life Sciences Commons^™

Prediction Of Npk Doses Based On Targeted Fruit Sugar Content In Cucumis Melo L. ‘Cantaloupe’ Using A Simple Regression Method, Rangga Wibawa, Syariful Mubarok, Kusumiyati, Fiky Yulianto Wicaksono, Ruminta, Rahmat Budiarto, Dina Putri, Irvan Varinto, Muhammad Rizki, Adrian Maolana, Kahirun Nisa, Gunes Giyarto

Jurnal Kultivasi

The fruit sweetness is the main target in melon plant production. The highest criterion of sweetness is excellent, with 16% of total sugar content. Modification of essential plant nutrients is the alternative to reach that category. So, this study aims to obtain optimum NPK doses using a simple regression method. The experiment was conducted in a greenhouse with a soilless culture hydroponic system from August until November 2023 using a completely randomized design (CRD) with five treatments and four replications. The parameters included leaf area, plant dry matter, leaf nutrient uptake, fruit weight, and fruit sugar content. Pearson correlation analysis …

Potential Propagation Seedling Of Ramie (Boehmeria Nivea) From Various Types Of Stem Cuttings, Taufiq Hidayat Rahman Side, Mayasari Yamin, Sri Mulyani, Agung Pangestu Aji, Luthfi Ayunawati

Jurnal Kultivasi

Ramie is a fiber-producing plant that can replace cotton as a raw material for the textile industry. In general, ramie plants are reproduced using rhizomes, but it takes a long time, around two years, to be used as a source of planting material. Therefore, other sources of explants besides rhizomes are required, such as stem cuttings. Explants from stem cuttings are quickly available and only need 2-3 months to be used as planting material. This study aims to determine the potential of effective stem cuttings that can be used as planting material for the propagation of ramie seedlings. The research …

The Role Of Dna Topoisomerases In The Completion Of Dna Replication, Parisa Mokhtari

Dissertations and Theses

Accurate replication of the genome is essential to maintain cellular life. Completing DNA replication on the chromosome is central to this task and involves several enzymes, including RecBCD, RecG and SbcCD-ExoI, which process, join, and resolve the two convergent replication forks. This event is certain to generate a number of structural complexities involving supercoiling, tangles and knots as the two DNA replication forks converge which must be resolved to maintain the integrity of the genome. Structural knots and tangles generated during DNA replication, transcription and segregation are typically resolved by DNA topoisomerases. E. coli encodes four DNA topoisomerases--two type I …

Automated Segmentation Of Mri White Matter Hyperintensities In 8421 Patients With Acute Ischemic Stroke, Hosung Kim, Wi-Sun Ryu, Dawid Schellingerhout, Jonghyeok Park, Jinyong Chung, Sang-Wuk Jeong, Dong-Seok Gwak, Beom Joon Kim, Joon-Tae Kim, Keun-Sik Hong, Kyung Bok Lee, Tai Hwan Park, Jong-Moo Park, Kyusik Kang, Yong-Jin Cho, Byung-Chul Lee, Kyung-Ho Yu, Mi Sun Oh, Soo Joo Lee, Jae-Kwan Cha, Dae-Hyun Kim, Jun Lee, Man Seok Park, Hee-Joon Bae, Dong-Eog Kim

Faculty, Staff and Student Publications

Background and purpose: To date, only a few small studies have attempted deep learning-based automatic segmentation of white matter hyperintensity (WMH) lesions in patients with cerebral infarction; this issue is complicated because stroke-related lesions can obscure WMH borders. We developed and validated deep learning algorithms to segment WMH lesions accurately in patients with cerebral infarction using multisite data sets involving 8421 patients with acute ischemic stroke.

Materials and methods: We included 8421 patients with stroke from 9 centers in Korea. 2D UNet and squeeze-and-excitation (SE)-UNet models were trained using 2408 FLAIR MRIs from 3 hospitals and validated using 6013 FLAIR …

Antibiotic Resistance Of Laboratory E. Coli Strains, Alexis H. Hart

Honors Projects

Antibiotic resistance is an ongoing global health crisis. The prevalence and distribution of antibiotic resistance in environmental microbial communities have become climactic areas of investigation due to their far-reaching implications for ecosystem health, human well-being, and the sustainability of antimicrobial efficacy.

Transcription And 3d Chromatin Organization Interplay At Sub-Kilobase Scale, Hannah Harris

Theses & Dissertations

Nuclear compartments are prominent features of 3D chromatin organization, but sequencing depth limitations have impeded investigation at ultra fine-scale. CTCF loops are generally studied at a finer scale, but the impact of looping on proximal interactions remains enigmatic. Here, we critically examine nuclear compartments and CTCF loop-proximal interactions using a combination of in situ Hi-C at unparalleled depth, algorithm development, and biophysical modeling. Producing a large Hi-C map with 33 billion contacts in conjunction with an algorithm for performing principal component analysis on sparse, super massive matrices (POSSUMM), we resolve compartments to 500 bp. Our results demonstrate that essentially all …

Leveraging Social Ties To Financial Gains: Exploring The Impact Of Social Capital In Rural Development, Mallory L. Rahe, Andrew J. Van Leuven, Trey Malone

Department of Agricultural Economics Faculty Publications

Social capital, defined as networks of individuals linked through bonding or bridging relationships, plays a crucial but poorly conceptualized role in place-based development. The word “capital” implies an underlying value of the social connections throughout a community, and this study explores how these social relationships are used to initiate, plan, access financial capital, and implement economic development projects in rural areas. We avoid county-level aggregation bias and use a divergent pathway case study of projects across eight communities to examine how social ties are used during rural development in places with both high and low financial capital. Both types of …

Assessment Of The Accuracy Of A Deep Learning Algorithm- And Video-Based Motion Capture System In Estimating Snatch Kinematics, Federico Thiele, Florian K. Paternoster, Chris Hummel, Fabian Stöcker, Denis Holzer

International Journal of Exercise Science

International Journal of Exercise Science 17(1): 1629-1647, 2024. In weightlifting, quantitative kinematic analysis is essential for evaluating snatch performance. While marker-based (MB) approaches are commonly used, they are impractical for training or competitions. Markerless video-based (VB) systems utilizing deep learning-based pose estimation algorithms could address this issue. This study assessed the comparability and applicability of VB systems in obtaining snatch kinematics by comparing the outcomes to an MB reference system. 21 weightlifters (15 Male, 6 Female) performed 2–3 snatches at 65%, 75%, and 80% of their one-repetition maximum. Snatch kinematics were analyzed using an MB (Vicon Nexus) and VB (Contemplas …

Evaluating The Impact Of A One Day Resiliency Training Facilitation Program On Nurses' Wellbeing In An Acute Care Hospital, Amarachi Chidinma Eke-Okoro

Student Scholarly Projects

Practice Problem: Nursing burnout is a significant problem with far-reaching consequences. High levels of stress, emotional exhaustion, and reduced job satisfaction among nurses contribute to poor patient outcomes, increased medical errors, and high turnover rates. There is a high prevalence of burnout among nurse executives, consequences of which include extreme stress, emotional anguish, and a desire to quit, which points to a larger problem with burnout affecting the nursing profession (Martin et al., 2023). Fostering resilience among nurses can help to mitigate these outcomes by enhancing physical, mental, and social health through building purpose, positive emotions, and effective stress management. …

Correlation Of Arbuscular Mycorrhizal Dosage With Level Of Colonization, Nutrient Concentration, And Photosynthesis Pigment Of Cavendish Banana Plant, Muhammad Akhsan Akib, Nur Ilmi, Risnawati, Retno Prayudyaningsih, Syatrawati

Jurnal Kultivasi

The commercial development of Cavendish bananas still faces many obstacles, including the availability of seedlings/suckers at low prices, so technological substitution is needed to stimulate the growth of Cavendish banana suckers in the form of arbuscular mycorrhizal (AM) biological agents. The research aims to determine the correlation between AM doses and colonization levels, tissue nutrient concentrations, and photosynthetic pigments in Cavendish banana seedlings/suckers. It is also a novelty in this research study. The research was carried out in Parepare city at coordinates 3°59'30.204" S; 119°38'42.936" E using four AM doses as independent variables, namely 0 g, 5 g, 10 g, …

Metabolic Response Of The Code Goby (Gobiosoma Robustum) To Estuarine Climate Change Forecasts, Karli S. Corey

All HCAS Student Capstones, Theses, and Dissertations

Forage fishes are small bodied species that form a diverse functional group, serving as a primary food source for a wide range of marine predators. This group plays a significant ecological role through energy transfer to higher trophic levels. Gobiosoma robustum (Code Goby) is a substantive diet component of several recreationally significant juvenile sportfishes in Florida estuaries. While the thermal tolerance of this species may be inferred from observational data, the absolute physiological limitations of this species remain unknown. In this study, intermittent-flow respirometry and critical thermal maxima were used to determine the response of G. robustum to chronic and …

Spatial Ecology Of Large Bodied Ichthyofauna In The Red River Of The North Basin, William Marshall Stuart

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding spatial patterns and processes is essential for designing research studies, implementing management actions, and planning restoration efforts. The Red River of the North basin spans a broad geographic area where jurisdictional oversight is divided among several entities (Manitoba, CAN; North Dakota, USA; Minnesota, USA; South Dakota, USA), creating a mosaic of regulatory and functional process zones. Understanding the spatial ecology of freshwater fishes in this disjointed landscape is essential to address diverse life history requirements and the movement constraints imposed by anthropogenic structures. Long-term acoustic telemetry revealed that large bodied ichthyofauna employ a diverse range of movement strategies (i.e., …

Black Grouper (Mycteroperca Bonaci) Neurocranium, Nicholas Burchett, Kelsee Rotering, Marissa Rosas, David Kerstetter, Derek Burkholder

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Use Of Creative Outlets To Impact Quality Of Life For Individuals With Amyotrophic Lateral Sclerosis, Andria Burden, Helen Carey, Zeida Gutierrez

Fall 2024 OTD Capstone Symposium

Amyotrophic Lateral Sclerosis (ALS) profoundly impacts quality of life by limiting participation in meaningful activities. This mixed-methods study explored the role of creative outlets in enhancing quality of life for individuals with ALS. Quantitative data from the ALS-Specific Quality of Life Questionnaire-Short Form (ALSSQOL-SF) and qualitative insights from semi-structured interviews revealed key themes of adaptation, purpose, community, and quality of life. Findings indicate that creative outlets foster self-expression, social connection, and cognitive engagement while reducing isolation. Recommendations include integrating tailored creative activities into occupational therapy (OT), emphasizing group settings and early introduction to promote adaptability and community-building. This study underscores …

Going Vegan Can Progressively Lift Us Into Heightened Consciousness – Exclusive Book Extract From Hungry Beautiful Animals, Matthew C. Halteman

University Faculty Publications and Creative Works

In this excerpt taken from Chapter 5 of the new book Hungry Beautiful Animals, author and philosopher Matthew Halteman argues that choosing not to eat animals can usher us into a higher state of consciousness.

Comparative Study Of Rice Morphological And Physiological Characteristics Of Rice Grown Under Organic And Inorganic Farming, Amad Safrudin, Ratna Dewi, Dulbari

Jurnal Kultivasi

Organic farming practices have shown a potential to improve rice yields, aside from the popular conventional ones. This study aimed to comparatively analyze the morpho-physiological characteristics of rice plants grown under organic and inorganic farming. This research was conducted at the Polinela Organic Farm experimental station (5°21'10"S 105°13'43"E, 114 m sea above level), from February to April 2023 using a completely randomized design. The results showed that rice grown organically exhibited a notably higher chlorophyll index and actual water use efficiency compared to those grown inorganically. Conversely, inorganic farming resulted in a greater number of tillers than organic farming. However, …

Maize Hybrids’ Genetic Variability Based On Qualitative And Quantitative Traits, Slamet Bambang Priyanto, Herawati, Suwarti, Ayyub Ar Rahman, Nining Nurini Andayani, Abdul Fattah, Muhammad Azrai

Jurnal Kultivasi

Genetic variability was a prerequisite to doing a plant breeding program. A broad genetic variability allows plant breeders to select a desired genotype. This research aims to assess the maize hybrid's genetic variability based on qualitative and quantitative traits. This research was conducted in the Bone district, south Sulawesi, from November 2022 to March 2023. Fifteen maize hybrids were arranged in a randomized complete block design with three replications. The variables observed are qualitative and quantitative traits. Principal component (PCA) and cluster analyses assessed the genetic variability. The result indicated that based on a loading factor greater than 0.70, the …

Biological Control Of Roseau Cane Scale With Parasitoid Wasps In Louisiana, Tanner C. Sparks

LSU Doctoral Dissertations

Roseau cane scale, Nipponaclerda biwakoensis (Hemiptera: Aclerdidae) is an invasive species of scale insect negatively impacting Phragmites australis (Cyperales: Poaceae) stands within the Mississippi River Delta. The scales were first detected in 2017 from reports of Phragmites die-back within the MRD by landowners. Initial range surveys located RCS infested Phragmites stands were primarily limited to southeastern Louisiana with a single population near Port Arthur, Texas. Follow-up field surveys conducted annually from 2021 to 2023 monitoring further range expansion by the scale show the current range extends nearly 600 km between High Island, Texas and Bayou la Batre, Alabama. Climate matching …

Mutation- And Mrd-Informed Treatments For Transplant-Ineligible Patients, Curtis A Lachowiez, Courtney D Dinardo

Faculty, Staff and Student Publications

The ongoing development of molecularly targeted therapies in addition to the new standard of care combination of azacitidine and venetoclax (AZA-VEN) has transformed the prognostic outlook for older, transplant-ineligible patients with acute myeloid leukemia (AML). While conventional treatments, such as standard anthracycline and cytarabine- based chemotherapy or hypomethylating agent (HMA) monotherapy, are associated with a generally poor prognosis in this patient population, the use of these novel regimens can result in long-lasting, durable remissions in select patient subgroups. Furthermore, the simultaneous discovery of resistance mechanisms to targeted therapies and AZA-VEN has enabled the identification of patient subgroups with inferior outcomes, …

Transcriptional Regulation In The Absence Of Inositol Trisphosphate Receptor Calcium Signaling, Michael Young, David M. Booth, David Smith, Marco Tigano, György Hajnóczky, Suresh K. Joseph

Department of Pathology, Anatomy, and Cell Biology Faculty Papers

The activation of IP3 receptor (IP3R) Ca2+ channels generates agonist-mediated Ca2+ signals that are critical for the regulation of a wide range of biological processes. It is therefore surprising that CRISPR induced loss of all three IP3R isoforms (TKO) in HEK293 and HeLa cell lines yields cells that can survive, grow and divide, albeit more slowly than wild-type cells. In an effort to understand the adaptive mechanisms involved, we have examined the activity of key Ca2+ dependent transcription factors (NFAT, CREB and AP-1) and signaling pathways using luciferase-reporter assays, phosphoprotein immunoblots and whole genome transcriptomic studies. In addition, the diacylglycerol …

The Effect Of Seed Provenance And Organic Fertilizer Types On Growth And Yield Of G2 Potato (Solanum Tuberosum L. Cv. Medians) Seeds In Jatinangor Medium Plains, Mohammad Faisal Rafiif, Wawan Sutari, Jajang Sauman Hamdani

Jurnal Kultivasi

Potato growth is influenced by seed provenance and fertilization, but the availability of high-quality potato seeds is still limited. To overcome those challenges, solutions include using temperature-tolerant potato varieties from medium plains and applying organic fertilizers to improve potato growth and yield. The purpose of this research was to determine the effect of the interaction between seed provenance and application of organic fertilizers on the growth and yield of G2 potato seeds of the Medians cultivar in the Jatinangor medium plains. The research was conducted from June to October 2023 at the Ciparanje Experimental Farm, Faculty of Agriculture, Universitas Padjadjaran, …

Spatiotemporal Patterns In Orbicella Faveolata Wound Regeneration As An Indicator Of Colony Health, Alexander G. Wheeler

All HCAS Student Capstones, Theses, and Dissertations

Anthropogenic (e.g. damage from anchors, scuba divers, tissue sampling) and natural disturbances (e.g. predation, storm damage) can result in wounding of live tissue on coral colonies. Wounding has been shown to detract from a common resource pool, increasing disease susceptibility and impairing coral growth and reproductive activity. Regeneration not only varies between species, but also between conspecifics in the same location. A colony’s capacity to regenerate tissue can be an indicator of a colony’s condition and resilience. Understanding the physiological and environmental factors that affect tissue regeneration alongside the ultimate impact of sampling (disease and predation correlations) are needed for …

Epigenetic Mechanisms And Senescence In Aging And Cancer, Alla Karpova

Arts & Sciences Graduate Student Theses and Dissertations

Aging is marked by the progressive decline of cellular and organ function. This process often manifests through DNA damage, epigenomic alterations, telomere shortening, and metabolic or mitochondrial dysfunction. As DNA damage and other stressors accumulate, cells take measures to prevent malignant transformation. One such measure is cellular senescence, a state of irreversible cell cycle arrest that halts the growth of pre-malignant cells. When cells are unable to enter senescence due to high levels of genomic alterations, they typically undergo apoptosis or necrosis. However, if mutations affect key driver genes, allowing cells to evade death, they may become malignant, continuing to …

Single-Molecule Studies Reveal The Off-Pathway Early Paused State Intermediates As A Target Of Streptolydigin Inhibition Of Rna Polymerase And Its Dramatic Enhancement By Gre Factors, Anatolii Arseniev, Mikhail Panfilov, Georgii Pobegalov, Alina Potyseva, Polina Pavlinova, Maria Yakunina, Jookyung Lee, Sergei Borukhov, Konstantin Severinov, Mikhail Khodorkovskii

Rowan-Virtua School of Osteopathic Medicine Departmental Research

Antibiotic streptolydigin (Stl) inhibits bacterial transcription by blocking the trigger loop folding in the active center of RNA polymerase (RNAP), which is essential for catalysis. We use acoustic force spectroscopy to characterize the dynamics of transcription elongation in ternary elongation complexes (ECs) of RNAP in the presence of Stl at a single-molecule level. We found that Stl induces long-lived stochastic pauses while the instantaneous velocity of transcription between the pauses is unaffected. Stl enhances the short-lived pauses associated with an off-pathway early paused state intermediates of the RNAP nucleotide addition cycle. Unexpectedly, we found that transcript cleavage factors GreA and …

Smokejumper Obituary: Rossheim, John David (Missoula 1949), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Composting For Cleaner Air, Simi Benisty, Katie Bui, Narmin Solman, David Woo

Master's Projects and Capstones

The aim of this project was to address food waste at Mary's Kitchen by implementing a composting initiative to divert organic waste from landfills. The project took place in a nonprofit organization that serves food to the homeless, where the target population includes staff, volunteers, and clients of the kitchen. Key interventions involved creating educational materials on composting, recycling, and waste management, including flyers in both English and Spanish, as well as a QR code for easy access. Additionally, smaller, color-coded buckets were introduced to replace the 33-gallon bins, making waste sorting more manageable. Measures included staff and volunteer compliance …

Investigating The Relationship Between Population Density Surrounding An Airport And The Number Of Wildlife Strikes Per Operation., Alexandra E. Rowe, Daniel Alves, Evan Park, Brooke Wheeler, Vivek Sharma

Aeronautics Student Publications

This study compared the relationship between population density surrounding an airport and reported wildlife strikes per operation. A very weak correlation with no statistical significance was determined which emphasizes the need for future research on wildlife mitigation strategies and understanding wildlife patterns.

Butterfly Peacock Bass (Cichla Ocellaris), Samuel K. Zellefrow, David Kerstetter, John Nichols

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Progerin Can Induce Dna Damage In The Absence Of Global Changes In Replication Or Cell Proliferation, Liza A. Joudeh, P. Logan Schuck, Nina M. Van, Alannah J. Dicintio, Jason A. Stewart, Alan S. Waldman

Faculty Publications

Hutchinson-Gilford Progeria Syndrome (HGPS) is a rare genetic condition characterized by features of accelerated aging, and individuals with HGPS seldom live beyond their mid-teens. The syndrome is commonly caused by a point mutation in the LMNA gene which codes for lamin A and its splice variant lamin C, components of the nuclear lamina. The mutation causing HGPS leads to production of a truncated, farnesylated form of lamin A referred to as "progerin." Progerin is also expressed at low levels in healthy individuals and appears to play a role in normal aging. HGPS is associated with an accumulation of genomic DNA …

Understanding Tuberculosis Transmission And Progression: A Prospective Cohort Study Of Index Cases And Close Contacts In Moldova, Rehan R. Syed, Donald G. Cantazaro, Naomi Hillery, Valeriu Crudu, Elena Tudor, Nelly Ciobanu, Alexandru Codreanu, Maryam Kheirandish Borujeni, Antonino Cantazaro, Timothy Rodwell

Biological Sciences Faculty Publications and Presentations

Objectives

This study aims to determine the progression rate, risk factors and timeline for the progression from exposure to active tuberculosis (TB) in a high-risk population. Using a prospective cohort in the Republic of Moldova, we investigated pulmonary TB disease progression among close contacts of patients with TB in a low-burden country with high rates of drug-resistant TB.

Methods

Close contacts of patients with newly diagnosed TB were recruited and monitored to evaluate for progression rates to active TB. Data collected included demographic information, medical and exposure history, and clinical samples. Follow-up clinical evaluations of close contacts were conducted at …