Life Sciences Commons^™

Effects Of Feeding Distillers Grains Throughout A Yearling Heifer Beef Production System On Meat Quality Attributes And Effects Of Omnigen-Af With Ractopamine Hydrochloride On Animal Performance And Beef Carcass Characteristics Of Feedlot Steers, Kelby M. Sudbeck

Department of Animal Science: Dissertations, Theses, and Student Research

Heifers (n = 229; 225 kg ± 2) were used in a 2 x 2 x 2 factorial to determine the effects of longterm exposure to corn distillers grains plus solubles (DGS) on meat quality characteristics. Factors included supplementing 0.91 kg (LW) or 2.3 kg (HW) modified DGS (MDGS) while grazing corn stalks; 0.6% BW dry DGS (SS) daily or none (NS) during summer grazing; and finishing diet containing 40% wet corn gluten feed (CGF) or 40% MDGS (DGF) on a DM basis. An interaction was observed within CGF for discoloration, with SS increasing discoloration 30%; but no differences between …

Groundwater Trend Analysis And Salinity Risk Assessment For The South-West Agricultural Region Of Western Australia, 2007–12, G Paul Raper, Russell Speed, John Andrew Simons, A L. Killen, Andrew Blake, A T. Ryder, Rosemary H. Smith, Grantley Stainer, L Bourke

Resource management technical reports

Dryland salinity is a hydrologically driven land degradation hazard in the south-west agricultural region of Western Australia (WA). Shallow-rooted annual crops and pastures transpire significantly less water than the native vegetation they replaced, leading to an increase in recharge, rising groundwater levels and the development of shallow watertables in areas where often none existed previously. Rising groundwater levels mobilise soluble salts, naturally stored at high concentrations in the regolith. These salts can be concentrated in the root zone of vegetation by evapotranspiration.

Examining Predation As A Possible Means Of Controlling Crown-Of- Thorns Starfish (Acanthaster Planci) Outbreaks On Reefs Around Lizard Island, Australia, Amanda Chan

Independent Study Project (ISP) Collection

Since the world’s coral reefs are currently threatened by a variety of different natural and anthropogenic factors, research on protecting coral reefs is pivotal to protect these diverse ecosystems. However, only Indo-Pacific reefs such as the Great Barrier Reef are dying due to a corallivorous echinoderm threat known as the Crown-of-Thorns Starfish (Acanthaster planci). A. planci is a starfish which feeds on coral tissue and can quickly reduce coral cover on a reef during an outbreak. Although scientists are still unsure as to what causes these outbreaks, one suggestion is the predator-removal theory. The predator removal-theory states that major predators …

Index-Based Insurance And Risk Management Among Nomadic Mongolian Herders , Kelsey Larson

Independent Study Project (ISP) Collection

Mongolian herders must contend with the risk of dzuds, harsh winters that can kill large numbers of livestock. To do so, they use a mixture of formal financial tools and traditional risk mitigation techniques. This paper is a study of the interaction between the Mongolian Index-based Livestock Insurance Program and traditional informal risk mitigation techniques. The researcher interviews herders in Bulgan soum, Arhangai aimag and Galuut soum, Bayanhongor aimag to compare the IBLI program’s impact in a community that has had IBLI since 2006 and one that only received IBLI in 2012. This study finds that insurance purchase is positively …

New Study Of Altitude And Butterfly Diversity Evaluation Of Butterfly Diversity In La Hesperia And Influence Of Altitude On Diversity, Savannah Artusi

Independent Study Project (ISP) Collection

Due to the increasing effects of climate change, studies focusing on bioindicator species are becoming more necessary than ever. Additionally, knowledge about global biodiversity can be very useful to conservation organizations because it helps them determine what areas need to be conserved the most .Butterflies are useful as bioindicators due to their complex life cycles, importance in the food chain, and sensitivity to environmental changes. This project focused on studying the overall biodiversity of butterflies in the La Hesperia reserve. In addition, this study aimed to determine how butterfly diversity varies at different altitudes. To do this, the reserve was …

River Health In Puyo, Ecuador The Use Of Macroinvertebrates As Bioindicators Of Water Quality And Alternatives To Chlorine For Whitening Clothes In The Puyo River Watershed, Allison Rowe

Independent Study Project (ISP) Collection

Fresh water is an important resource in Puyo, Ecuador, a city named after the Kichwa word for ‘cloudy’ in reference to its overcast weather. However, the Puyo River watershed is the most contaminated in all of Pastaza Province. The objective of this investigation was first to evaluate the health of the Puyo River using macroinvertebrate analyses and measurements of chlorine concentrations, temperature, pH, turbidity, velocity, and flow rate. The second objective was to learn about practices used to whiten clothes in Puyo and perceptions of water quality in order to understand the magnitude of bleach pollution and the population’s awareness …

New Observations Of The Andean Ibis (Theristicus Branickii, Threskiornithidae): Distribution, Movements, And Behavior Near Volcán Antisana, Benjamin West

Independent Study Project (ISP) Collection

The Andean Ibis (Theristicus branickii) of the highland grasslands of Ecuador, Peru, and Bolivia is listed globally as Near Threatened and Critically Endangered in Ecuador. The Ecuadorian population is estimated at 100 individuals and is restricted to the vicinities of Volcán Antisana and Volcán Cotopaxi. Knowledge of the nesting biology of the Andean Ibis in Ecuador consists of a single filming in 1989. Much of its general ecology and movements is also unknown. The purpose of this study was to find evidence of nesting ibis in Ecuador while also collecting data on behavior, population, movements and interspecific interactions. Data was …

Misalignments: Challenges In Cultivating Science Faculty With Education Specialties In Your Department, Seth D. Bush, Nancy Pelaez, James A. Rudd Ii, Michael T. Stevens, Kimberly D. Tanner, Kathy S. Williams

PIBERG Publications

Science Faculty with Education Specialties (SFES) are increasingly being hired across the United States. However, little is known about the motivations for SFES hiring or the potential or actual impact of SFES. In the context of a recent national survey of US SFES, we investigated SFES perceptions about these issues. Strikingly, perceptions about reasons for hiring SFES were poorly aligned with perceptions about potential and actual contributions reported by SFES themselves, and the advice they extended to beginning SFES was varied. While preparation of future teachers and departmental teaching needs were common reasons offered for SFES hiring, the potential and …

A Social–Ecological Systems Approach To Non-Native Species: Habituation And Its Effect On Management Of Coqui Frogs In Hawaii, Emily A. Kalnicky, Mark W. Brunson, Karen H. Beard

Wildland Resources Faculty Publications

Non-native species introductions have the ability to affect both ecological and social systems, thus to address those outcomes both ecological and social influences on an invasion need to be understood. We use a social–ecological systems approach to investigate connections between human and ecological factors that affect efforts to control the non-native coqui frog (Eleutherodactylus coqui) on the island of Hawaii. The coqui frog is recognized as a ‘pest’ and ‘injurious wildlife’ by the Hawaii Department of Agriculture. Because the coqui occurs on many small private properties across the island, it is necessary to enlist private citizens in control efforts. Control …

Exploring The Role Of Ospreys In Education, Rebecca Cushing, Brian E. Washburn

United States Department of Agriculture Wildlife Services: Staff Publications

Recent research in childhood education has demonstrated that experiences in nature are important in shaping early environmental consciousness (Hinds and Sparks 2008, Hussar and Horvath 2011, Cheng and Monroe 2012) and ultimately the expression of pro-environmental attitudes and behaviors during adulthood (Wells and Lekies 2006, Chawla and Cushing 2007, Collado et al. 2013). Increasingly, those experiences happen via written and electronic media (e.g., textbooks, computer screens) or in very anthropogenic environments (e.g., in parks and zoos) and less through direct contact with nature, a concept Louv (2005) referred to as ‘‘nature deficit disorder.’’ Even in schools where environmental education is …

Traffic Noise Decreases Body Condition And Stopover Efficiency Of Migrating Songbirds, Heidi Elise Ware

Boise State University Theses and Dissertations

Numerous studies document impacts of roads on wildlife, and suggest traffic noise as a primary cause of population declines near roads. For migratory birds faced with increasingly human-altered habitats, noise may pose a serious threat. Using an array of speakers, we applied traffic noise to a roadless landscape, directly testing the effect of noise alone on an entire songbird community. Focusing on individuals that stayed despite the noise, we demonstrate that songbirds show a near halving of ability to gain body condition when exposed to traffic noise during migratory stopover. This marked degradation in stopover efficiency may help explain dramatic …

Ciliates Of Sagebrush-Steppe Soils Of Southwestern Idaho: Species Richness And Its Relationship To Changed Soil Variables After Wildfire Events, Laura G. Wendell

Boise State University Theses and Dissertations

I conducted a pilot study to examine species richness of terrestrial ciliates associated with big sagebrush habitat (Artemisia tridentata) in southwestern Idaho, USA. As wildland fires are a naturally occurring disturbance in this area, soil variables associated with these fires (% C, % N, pH, soil texture, and % clay) were measured at three sites, both in burned and unburned areas. These soil characteristics were compared to corresponding ciliate diversity and ratios of r-selected colpodeans to K-selected polyhymenophorans (C/P) in non-flooded Petri dish preparations. A total of 85 ciliate taxa were observed across the three sites, including …

Microvascular Function In Metabolically Healthy Groups Differing In Bmi And Waist Circumference, Nathan R. Earl

Theses and Dissertations

BACKGROUND: Microvascular dysfunction (MD: impaired performance of blood flow, tissue perfusion, blood pressure, etc.) is one of the earliest stages in the progression of various chronic diseases. OBJECTIVE: The aim of this study was to determine if a difference in microvascular function existed between two metabolically healthy groups that differed in BMI and waist circumference. DESIGN: This study employed a causal comparative design, with two groups: I) normal weight (n =14, BMI 28 kg/m2). METHODS: Microvascular function was assessed by measuring skin blood flow (SkBF) using laser Doppler flowmetry during postocclusive reactive hyperemia (PORH). The area under the SkBF time …

Studies Of Phou In Escherichia Coli: Metal Binding, Dimerization,Protein/Protein Interactions, And A Signaling Complex Model, Stewart G. Gardner

Theses and Dissertations

Phosphate is an essential nutrient for all forms of life. Escherichia coli has a PhoR/PhoB two component regulatory system that controls the expression of various genes whose products allow the cell to thrive in low phosphate environments. The signaling mechanism of the PhoR/PhoB system has been studied and the phosphorylation cascade that controls gene expression is well understood. What is still unknown is how PhoR senses the phosphate level of the environment. The PstS, PstC, PstA, PstB, and PhoU proteins play a role in this signal sensing. This work confirms the hypothesis that the PstSCAB complex senses the environmental phosphate …

A Randomized Controlled Trial To Study The Effects Of Breakfast On Energy Intake, Physical Activity, And Body Fat In Women, Gabrielle Marie Lecheminant

Theses and Dissertations

PURPOSE: The purpose of this study was to determine the effects of eating breakfast on energy intake, physical activity, body weight, and body fat in women who were nonhabitual breakfast eaters over a one-month period. METHODS: We tested 49 premenopausal, nonhabitual breakfast-eating women to compare the effects of eating breakfast versus not eating breakfast. Each participant was randomized to one of two conditions: breakfast or no breakfast. Breakfast eaters were required to eat within an hour and a half of awakening and had to be finished eating their breakfast meal by 8:30 A.M. Non-breakfast eaters were defined as not consuming …

Variation In Resource Utilization And Cost Of Reproduction For Two Burying Beetle Species, Peter J. Meyers

Theses and Dissertations

The cost of reproduction hypothesis suggests that allocation into current reproduction constrains future reproduction. How organisms accrue reproductive costs may differ between species and with varying levels of resource quality. Burying beetles are model organisms for testing for the cost of reproduction because of their unique natural history; beetles utilize small vertebrate carcasses for reproduction and they and their offspring feed exclusively on these discrete resources. Burying beetles also can utilize a large range of carcass sizes for reproduction. We tested for the cost of reproduction in two species of burying beetles, Nicrophorus marginatus and Nicrophorus guttula found in Central …

Alcohol Modulation Of Dopamine Release, Nathan Dan Schilaty

Theses and Dissertations

The mesolimbic dopamine (DA) system projects from the ventral tegmental area (VTA) to structures associated with the limbic system, primarily the nucleus accumbens (NAc). This system has been implicated in the rewarding effects of drugs of abuse. Many drugs of abuse act in the VTA, the NAc, or both. Dopamine neurons in the VTA that project to the NAc, and the GABA neurons that inhibit DA neurons locally in the VTA or project to the NAc, play an important role in mediating addiction to various drugs of abuse, in particular alcohol. There is a growing body of evidence of co-dependence …

Parallel Adaptation Of Cd4 In Siv-Endemic Gorilla And Pan Lineages, Katie E. Brown

Biological Sciences

The simian immunodeficiency virus (SIV) is homologous to the human immunodeficiency virus (HIV), and naturally infects chimpanzees and gorillas in the wild. Some African primate species appear to have evolved resistance to SIV, in that the virus no longer is found in the species or, if infected, individuals within the species show no serious symptoms of simian AIDS (SAIDS). In contrast, Asian primate species do not appear to naturally harbor SIV and, like humans, often progress to AIDS following infection. CD4 is the primary T cell receptor that SIV/HIV interacts with to infect host T cells. Domain 1 (D1) of …

A Preventive Maintenance Framework In Dairy Production Operations, Maria F. Vargas

Theses and Dissertations - UTB/UTPA

Dairy operations suffer frequent stops. Product shrinkage is a consequence of downtime, which includes losses of packaging material, scraped finish product and capacity. This work proposes a troubleshooting methodology to identify causes of downtime, estimation of waste cost, and minimization of operation disruptions by applying a combination of a cost function to assess waste, and performance measurements. The drinkable yogurt process is evaluated to find the principal areas for wasted bottles and yogurt. In order to make a decision about which of those sources to address, a General Cost Function is used to estimate waste cost which include measurements that …

The Impacts Of Feral Horses On The Use Of Water By Pronghorn On The Sheldon National Wildlife Refuge, Nevada, Amy Marie Gooch

Theses and Dissertations

Feral horses occupy 31.6 million acres throughout western North America. Feral horses share similar habitats with a wide range of animal species, including pronghorn. Since horses are larger and often more aggressive than other animals of this region, they are generally socially dominant over all other native ungulate species. Pronghorn share water sources with horses in areas where both occur. In situations where horses exclude pronghorn from water, pronghorn fitness may be impaired, especially during the hottest months of the year when water is limited. The purpose of this study was to investigate interference competition between pronghorn and feral horses …

Enhancing Protein And Enzyme Stability Through Rationally Engineered Site-Specific Immobilization Utilizing Non-Canonical Amino Acids, Jeffrey Chun Wu

Theses and Dissertations

The demand for economical, efficient protein production, reuse, and recovery has never been greater due to their versatility in a large variety of applications ranging from industrial chemical manufacturing to pharmaceutical drug production. The applications for naturally and artificially produced proteins include protein drugs and other pharmaceutical products, as biocatalysts in environmentally friendly chemical manufacturing, as enzymes for food processing purposes, and as an essential component in many biomedical devices. However, protein production suffers from many challenges, which include the cost of production, protein stability especially under harsh conditions, and recoverability and reusability of the proteins. The combination of two …

Identification Of Cell Signaling Pathway Regulated By Micrornas In Cancer Cells Using A Systems Biological Approach, Sangbae Kim

Dissertations and Theses (Open Access)

MicroRNAs (miRNAs) are single-stranded, non-coding RNA molecules that regulate gene expression via imperfect binding of the miRNA to specific sites in the 3' untranslated region of the mRNAs. Because prediction of miRNA targets is an essential step for understanding the functional roles of miRNAs, many computational approaches have been developed to identify miRNA targets. However, identifying targets remains challenging due to the inherent limitation of current prediction approaches based on imperfect complementarity between miRNA and its target mRNAs. To overcome these current limitations, we developed a novel correlation-based approach that is sequence independence to predict functional targets of miRNAs by …

Comparative Genomics Reveals Insights Into Avian Genome Evolution And Adaptation, Guojie Zhang, Cai Li, Qiye Li, Bo Li, Dennis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Ödeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Quimei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. Da Fonseca, Alonzo Alfaro-Núñez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miriam V. Rivas, Erina Hara, Julia Smith, Marta Farré, Jitendra Narayan, Gancho Slavov, Michael N. Romanov, Rui Borges, João Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Håstad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O'Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alström, Jon Fjeldså, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D. Jarvis, M. Thomas P. Gilbert, Jun Wang

Jay F. Storz Publications

Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses …

The Drosophila T-Box Transcription Factor Midline Functions Within The Insulin/Akt And C-Jun-N-Terminal Kinase Signaling Pathways To Regulate Interomatidial Bristle Formation And Cell Survival, Qichuan Chen

Master's Theses

From a genetic and allelic modifier screen, we report that the Drosophila melanogaster T-box transcription factor midline (mid), a homolog to the human TBX20 gene, interacts with dFOXO within the insulin receptor (InR) and the c-Jun-N-terminal kinase (JNK) signaling pathways to regulate interommatidial bristle (IOB) formation. Previous studies have identified mid’s role in cell fate specification of sensory organ precursor cells in conjunction with the Notch-Delta signaling pathway (Das et al., 2013). The Notch, InR, and JNK signaling pathways regulate dFOXO activity under conditions of stress. Thus, we determined the effects of oxidative stress and metabolic stress by …

Modulation Of T Lymphocytes By Tumor-Released Survivin, Jessica Marie Jutzy

Loma Linda University Electronic Theses, Dissertations & Projects

The tumor microenvironment is an area of intense interaction between normal and malignant cells. Factors and cell types within this environment can play a crucial role in the progression or regression of the tumor. Of primary interest are tumor-infiltrating T lymphocytes, which have been shown to have a key role in modifying the dynamics of the tumor microenvironment to promote or prevent tumor growth. While there is much in vitro and in vivo evidence for a modification of the tumor infiltrating T cell population toward a pro-tumor environment, what induces these changes within the tumor microenvironment has remained elusive. Our …

Methane Production By A Packed-Bed Anaerobic Digester Fed Dairy Barn Flush Water, Sean Richard Thomson

Master's Theses

Packed-bed digesters are an alternative to covered lagoon digesters for methane production and anaerobic treatment of dilute wastewaters such as dairy barn flush water. The physical media of packed-beds retain biofilms, often allowing increased treatment rates. Previous studies have evaluated several types of media for digestion of dilute wastewaters, but cost and media fouling have setback commercial development. A major operational cost has been effluent recirculation pumping.

In the present effort, a novel approach to anaerobic digestion of flush dairy water was developed at pilot-scale: broken walnut shells were used as a low-cost packed-bed medium and effluent recirculation was replaced …

Bibliography For Work In Ecocriticism, Zümre Gizem Yılmaz

CLCWeb: Comparative Literature and Culture

No abstract provided.

The Conservation Genetics Of Two Emydid Turtles: Emydoidea Blandingii And Malaclemys Terrapin, Charlotte Lizana Petre

Master's Theses

Conservation of turtles is complicated by their sensitivity to habitat degradation and overexploitation. I used microsatellites and standard population genetic analyses to explore genetic diversity, population structure, paternity and demographic history in two emydid turtles that are currently experiencing threats to their survival. The Blanding’s turtle, Emydoidea blandingii, has experienced habitat fragmentation throughout its range, and this study focuses on a population in Massachusetts where hatchlings from one population are being translocated to establish a new population. I found evidence of multiple paternity within clutches and found no significant reduction in genetic diversity when comparing the source population and …

Empirical Demonstration Of Environmental Sensing In Catalytic Rna: Evolution Of Interpretive Behavior At The Origins Of Life, Niles Lehman, Tess Bernhard, Brian C. Larson, Andrew J.N. Robinson, Christopher C.B. Southgate

Chemistry Faculty Publications and Presentations

Background: The origins of life on the Earth required chemical entities to interact with their environments in ways that could respond to natural selection. The concept of interpretation, where biotic entities use signs in their environment as proxy for the existence of other items of selective value in their environment, has been proposed on theoretical grounds to be relevant to the origins and early evolution of life. However this concept has not been demonstrated empirically.

Results: Here, we present data that certain catalytic RNA sequences have properties that would enable interpretation of divalent cation levels in their environment. …

Potential For Timing High-Energy Marine Inundation Events In The Recent Geological Past Through Age-Dating Of Reef Boulders In Fiji, James P. Terry, Samuel Etienne

All Works

© 2014, Terry and Etienne; licensee Springer. Transported coastal boulders have increasingly come to represent a valuable element of investigations within the broader framework of multi-proxy approaches applied to coastal hazard studies. Through a case study on Taveuni Island in Fiji, this paper outlines some approaches and hindrances to effective timing of prehistorical high-energy marine inundation events (storms and tsunamis) on tropical coastlines from the evidence of reef-platform carbonate boulders. Various sources of errors are outlined that investigators must consider when attempting to use carbonate boulder ages as a surrogate for timing past events. On Taveuni, uranium : thorium dates …