Life Sciences Commons^™

A Tree Theory Case Study In Steinernema, Camille Eileen Finlinson Porter

Theses and Dissertations

It is widely assumed that current phylogenetic methods are fairly accurate at recovering the evolutionary relationships among different species, but evaluating the relative success of this enterprise is a difficult task. This study addresses some fundamental questions associated with generating phylogenetic trees. The complete genomes of five species of Steinernema were sequenced and assembled. Genes were predicted in AUGUSTUS and orthologous genes were found from those data using OrthoMCL. I aligned 3890 genes in MAFFT and eliminated poorly aligned positions with GBlocks. I created individual trees for each gene as well as a supermatrix tree in PAUP*, using a closely …

Cultural Thinning Of Native Sagebrush Stands To Increase Seed Yields, Kurt David Elder

Theses and Dissertations

Wyoming big sagebrush (Artemisia tridentata Nutt.) is an important native shrub in the Great Basin because of its wide distribution where it dominates over 60 million ha and provides essential habitat and forage for many varied species. The hand collection of sagebrush seed often results in seed scarcity and the available seed quantities are at times inadequate to revegetate large areas that have been disturbed, resulting in a demand for sagebrush seed. Study locations were selected near Scipio and Sahara sand dunes of Utah, and treatments were 1-) control, no treatment applied area left undisturbed 2-) general chemical strip …

Assessment Of Land Use And Neotropical Herpetofauna Along Steep Gradients Of Elevation In An Ecuadorian Ramsar Wetland Site #1143, Nicholas K. Henke

Electronic Theses and Dissertations

Using a comparative ecological approach, over the course of 18 days at the transition from a particularly wet to dry season in 2010, I assessed herpetofaunal assemblages and related abiotic parameters (i.e., photosynthetically active radiation, specific conductance, temperature and coarse woody debris) between contiguous forest and human impacted areas along three paired transects across the steep elevation gradient at Laguna de Cube, Ramsar site # 1143. Visual encounter surveys were used to capture herpetofauna with species being processed (e.g., weight, digit length, photographed) and identified to the lowest taxonomic level possible. After evaluating transect data for pooling (i.e., no significant …

Characterization Of Sterile Tassel Silky Earl: A Homeotic B-Class Gene Involved In Specification Of Floral Organ Identity In Zea Mays, Steven Keith Williams

Theses and Dissertations

Specification of floral organ identity in angiosperm flowers is accomplished by the coordinated activity of A-, B-, C-, and E-class MADS-box genes. In the eudicots, B-class genes specify petal and stamen identity. This eudicot B-class function depends on the simultaneous expression of genes from two paralogous B-class lineages (the DEFICIENS/APETALA3 lineage and the GLOBOSA/PISTILLATA lineage). Proteins produced by genes from these two lineages interact as obligate heterodimers and together regulate the transcription of various downstream targets. These obligate heterodimers also positively regulate the transcription of the B-class genes themselves, thereby mediating a unique B-class autoregulatory feedback loop. There is compelling …

Crystal Structures And Kinetics Of Monofunctional Proline Dehydrogenase Provide Insight Into Substrate Recognition And Conformational Changes Associated With Flavin Reduction And Product Release, Min Luo, Benjamin W. Arentson, Dhiraj Srivastava, Donald F. Becker, John J. Tanner

Department of Biochemistry: Faculty Publications

Proline dehydrogenase catalyzes the FAD-dependent oxidation of proline to Δ1- pyrroline-5- carboxylate, which is the first step of proline catabolism. Here, we report the structures of proline dehydrogenase from Deinococcus radiodurans in the oxidized state complexed with the proline analog L-tetrahydrofuroic acid and in the reduced state with the proline site vacant. The analog binds against the si face of the FAD isoalloxazine and is protected from bulk solvent by the α8 helix and the β1-α1 loop. The FAD ribityl chain adopts two conformations in the E-S complex, which is unprecedented for flavoenzymes. One of the conformations is novel for …

U.S. Drought Monitor, December 11, 2012, Rich Tinker

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 11, 2012 (12/11/12) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Hay, Cattle, Winter wheat.

Psychological Well-Being And Dietary Quality Of College Women: Examining The Confounding Influence Of Sleep And Physical Activity, Whitney Ann Hebbert

Theses and Dissertations

Objective. To determine the relationship between overall psychological well-being and stress on diet quality among young adult women and to examine the potential confounding influence of season, physical activity and sleep on these relationships. Design/Participants. The study used a cross-sectional design. Three hundred and fifty-one women were recruited to participate in the study. All participants were university students (20.2 ± 1.6 y). Overall psychological well-being was assessed using the General Well-being Schedule (GWB) and the Perceived Stress Scale (PSS). Diet intake was measured using three 24-hour recalls over a seven day period. The Healthy Eating Index (HEI) was calculated to …

Tremulous Jaw Movements Induced By The Vmat2 Inhibitor Tetrabenazine, Samantha J. Podurgiel

Master's Theses

Parkinsonism is a movement disorder characterized by several cardinal motor symptoms: resting tremor, akinesia, bradykinesia, rigidity, and postural instability. Parkinsonian resting tremor can be modeled in rodents using the tremulous jaw movement model. Tremulous jaw movements (TJMs) are defined as “rapid vertical deflections of the lower jaw that resemble chewing but are not directed at any particular stimulus.” TJMs occur in a frequency range of 3-7 Hz and are induced by a number of pharmacological manipulations that parallel those seen in human Parkinsonism including dopamine (DA) depleting agents, DA antagonists, and cholinomimetic administration. Additionally, TJMs can be attenuated using antiparkinsonian …

Theta Dynamics: Speed, Acceleration And Contribution To Cognition, Lauren L. Long

Master's Theses

No abstract provided.

Adenosine Deaminase Enhances The Immunogenicity Of Human Dendritic Cells From Healthy And Hiv-Infected Individuals, Víctor Casanova, Isaac Isaac Naval-Macabuhay, Marta Massanella, Marta Rodríguez-García

Dartmouth Scholarship

ADA is an enzyme implicated in purine metabolism, and is critical to ensure normal immune function. Its congenital deficit leads to severe combined immunodeficiency (SCID). ADA binding to adenosine receptors on dendritic cell surface enables T-cell costimulation through CD26 crosslinking, which enhances T-cell activation and proliferation. Despite a large body of work on the actions of the ecto-enzyme ADA on T-cell activation, questions arise on whether ADA can also modulate dendritic cell maturation. To this end we investigated the effects of ADA on human monocyte derived dendritic cell biology. Our results show that both the enzymatic and non-enzymatic activities of …

Compositions And Methods For Synergistic Manipulation Of Plant And Insect Defenses, Graham Moores, Georgina Bingham

Department of Entomology: Faculty Publications

This invention relates to the control of plant pests, such as aphid and whitefly by treating plants with a compound which inhibits the plant pests ability to overcome plant defense responses, such as piperonyl butoxide or propyl gallate, in combination with a compound which activates plant defense responses, such as cis-Jasmone or beta-aminobutyric acid.

Walmart's Sustainability Journey: Peter Redmond And The Search For Sustainable Seafood, David G. Hyatt

Wal-Mart Sustainability Case Project

In “Peter Redmond and the Search for Sustainable Seafood,” students examine the responses of Peter Redmond, Vice President and Divisional Merchandise Manager of Deli and Seafood, to organizational pressures to make seafood more sustainable at Walmart.

Life History Analysis Of James River Atlantic Sturgeon (Acipenser Oxyrinchus Oxyrinchus) With Implications For Management And Recovery Of The Species, Matthew Balazik

Theses and Dissertations

Sturgeon species (family Acipenseridae) are threatened globally due to habitat destruction, pollution, and overfishing. The Atlantic sturgeon Acipenser oxyrinchus oxyrinchus was listed as a federally endangered species in 2012. Atlantic sturgeon have a complex life history that utilizes a wide range of habitats. Timing of life history varies in different areas requiring each population to be studied. Very little work has been published on Atlantic sturgeon reproduction in the James River, Virginia. To aid the recovery of James River Atlantic sturgeon, aspects of life history need to be addressed. To increase understanding of Atlantic sturgeon life history a length at …

Doublesex Target Genes In The Red Flour Beetle, Tribolium Castaneum, Jayendra Nath Shukla, Subba Reddy Palli

Entomology Faculty Publications

Sex determination cascade in insects terminates with the production of sex-specific protein, Doublesex (Dsx). We identified the dsx homolog (Tcdsx) in Tribolium castaneum. The pre-mRNA of Tcdsx is sex-specifically spliced into three female (Tcdsxf1, Tcdsxf2 and Tcdsxf3) and one male-specific (Tcdsxm) isoforms. Cis-regulatory elements potentially involved in sex-specific splicing of the Tcdsx pre-mRNA were identified in the female-specific exon and the adjoining intronic sequences. All the three female-specific TcDsx proteins share common OD1 and OD2 domains and differ in their C-terminal sequences. Knockdown of Tcdsx resulted in a reduction in the oocyte development, egg production and hatching of eggs laid. …

Five New Species Of Chaerilus Simon, 1877 From China, Indonesia, Malaysia, Philippines, Thailand, And Vietnam (Scorpiones: Chaerilidae), František Kovařík

Euscorpius

Chaerilus cimrmani sp. n. from Thailand, C. seiteri sp. n. from Philippines (Negros Island), C. solegladi sp. n. from Indonesia and Malaysia (Borneo Island), C. terueli sp. n. from Vietnam (Côn Son Island), and C. wrzecionkoi sp. n. from China (Tibet) are described. A key to all species of the genus Chaerilus Simon, 1877 is also presented.

Three New Species Of Compsobuthus Vachon, 1949 From Yemen, Jordan, Israel, And Somaliland (Scorpiones: Buthidae), František Kovařík

Euscorpius

Compsobuthus krali sp. n. of the werneri group from Yemen, C. levyi sp. n. of the werneri group from Jordan and Israel, and C. somalilandus sp. n. of the acutecarinatus group from Somaliland are described. A key to all species of the genus Compsobuthus Vachon, 1949 is presented.

Final Environmental Data Report December 2012: Technical Support Document For The 2013 State Of Our Estuaries Report, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership (PREP) is part of the U.S. Environmental Protection Agency’s National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuarine resources. PREP is funded by the EPA and is administered by the University of New Hampshire.

The following sections contain the most recent data for the indicators currently tracked by PREP.

Improving Phosphorus Use Efficiency Through Organically Bonded Phosphorus, Micheal W. Hill

Theses and Dissertations

Current maximum efficiency of phosphorus (P) fertilizers that is utilized by plants in the same year of application ranges from near zero to thirty percent. Despite low utilization of P in crop production, yields are often limited by P deficiencies. Innovative technology is requisite to achieve greater efficiency as fertilizer demands are increasing, while phosphorus mineral resources are rapidly being depleted. A growing environmental concern for nutrient pollution of surface waters also carries significant weight. A novel new product, Carbond® P, is promising technology to increase P use efficiency. Research is needed to understand its capabilities and the functioning mechanisms …

Effects Of Chemical Stimulation And Tumor Co-Incubation On Macrophage Activation And Aggressiveness, Measured Through Phagocytosis And Respiratory Burst, Bo Marcus Gustafsson

Theses and Dissertations

Macrophages are a cornerstone in innate immunity, especially important in detecting and killing invading microorganisms. In tumor biology, the macrophages can contribute both to anti-tumor activity and tumor promotion depending on individual tumor microenvironment and therefore have a large impact on both tumor progression and prognosis. Two of the most important functions of macrophages are the ability to phagocytose microorganisms and then kill them through the respiratory burst. Phagocytosis activates the respiratory burst, but the more subtle interactions between these processes are less known. Since phagocytosis and reactive oxygen species production are two attributes that change between the classically and …

A Survey Of Invasive Exotic Ants Found On Hawaiian Islands: Spatial Distributions And Patterns Of Association, Camie Frandsen Martin

Theses and Dissertations

An intensive sampling of all ant species encountered on 6 Hawaiian Islands: Big Island, Maui, Oahu, Kauai, Molokai, and Lanai took place between 1988 and 1996. Species presence and absence was recorded at each site. Using remote sensing, variables were added insitu and used throughout my analysis. Species accumulation curves suggest that sampling was comprehensive. There is a significant trend between island area and species richness which validates the Theory of Island Biogeography for invasive species. Islands were found to be significantly nested by area, order, and tourism. Cluster analysis shows a link between elevation, land-use and island, and species …

News Of The Department Of Animal Science, Department Of Animal Science

Animal Science Newsletters

No abstract provided.

Moving Forward: Preventing Water Shortage For Nevada, Sandra Blandon, Brianna Lyon

Anthropology 100: Feast and Famine In a Global World Poster Assignment

Southern Nevada is located in the arid Mojave Desert, which averages about 4 inches of rain each year. Southern Nevada gets about 90% of its water supply from the Colorado River. Seven western states and Mexico share the river. This means that The Colorado River provides water to 25 million people.

Coexistence Of Sympatric Taxa Of Chamaecrista Section Xerocalyx: Addressing The Interplay Between Morphology And Biotic Interactions, Beatriz Baker-Méio

Dissertations

Animal-plant interactions may prevent gene flow and promote divergent selection among closely related plants, ultimately leading to formation of new species. This may be the case for Chamaecrista sect. Xerocalyx, in which two or more of the 24 varieties often are encountered in the same area, with marked morphological and phenological differences among them. Over a broad geographical range, however, the morphological gaps among varieties disappear. Several biotic interactions contribute to the fitness of Chamaecrista species. Their flowers are pollinated by bees, and herbivores attack their leaves, flowers, fruits, and seeds. In addition, all species produce extrafloral nectar, which …

Molecular Characterization Of A Tetraspanin From The Human Liver Fluke, Opisthorchis Viverrini, Supawadee Piratae, Smarn Tesana, Malcolm K. Jones, Paul J. Brindley, Alex Loukas, Erica Lovas, Veerachai Eursitthichai, Banchob Sripa, Sirikanda Thanasuwan, Thewarach Laha

Microbiology, Immunology, and Tropical Medicine Faculty Publications

Background

The human liver fluke, Opisthorchis viverrini, is designated as a group 1 carcinogen, and is the major risk factor for cholangiocarcinoma in endemic countries throughout Southeast Asia. Proteins in the excretory-secretory products and tegumental surface membranes of the fluke have been proposed to play pivotal roles in parasite survival in the host, and subsequent pathogenesis. These macromolecules are therefore valid targets for the development of vaccines and new drugs to control the infection. Tetraspanins (TSP) are prominent components of the tegument of blood flukes where they are essential for tegument formation, are directly exposed to the immune system, …

Agenda: The Future Of Natural Resources Policy, University Of Colorado Boulder. Natural Resources Law Center

The Future of Natural Resources Policy (December 6)

This forum will provide a post-election perspective on some of the challenges and opportunities that natural resources, public lands, and energy policymakers in Washington are likely to face in the next four years. An expert panel will discuss the dynamics in the Department of the Interior, the Department of Agriculture, and Congress, and how their evolving policies are likely to affect Colorado in the coming years.

Moderator: Dean Phil Weiser, University of Colorado Law School

Panelists:

Jay Jensen, Associate Director for Land & Water Ecosystems, White House Council on Environmental Quality

Scott Miller, Visiting Assistant Professor, University of Colorado Law …

Background Reading: Department Of Agriculture, 2013 Budget Overview, United States. Forest Service, United States. Department Of Agriculture

The Future of Natural Resources Policy (December 6)

57 pages.

"Fiscal Year 2013 Budget Overview"

"February 2012"

"Background Reading"

The Future of Natural Resources Policy: This forum will provide a post-election perspective on some of the challenges and opportunities that natural resources, public lands, and energy policymakers in Washington are likely to face in the next four years. An expert panel will discuss the dynamics in the Department of the Interior, the Department of Agriculture, and Congress, and how their evolving policies are likely to affect Colorado in the coming years.

Winter Site Fidelity In Secretive Marsh Sparrows Along The Coast Of South Carolina, Susan M. Shaw

Electronic Theses and Dissertations

Salt marshes, which are threatened by sea level rise and development, provide habitat for a distinctive suite of specialized vertebrates, and knowledge of the life histories of salt marsh specialists may help preserve salt marsh fauna in the face of change. I studied wintering site fidelity of Seaside (Ammodramus maritimus), Saltmarsh (A. caudacutus) and Nelson's (A. nelsoni) Sparrows by mist-netting and banding birds at six sites in two salt marshes in South Carolina. I banded 261 sparrows over two winters, 2009-2010 and 2010-2011, and recaptured 92. Across-year return rates were high, but significantly different across species: 43% for Seaside, 63% …

A Hunter Virus That Targets Both Infected Cells And Hiv Free Virions: Implications For Therapy, Cody Greer, Gisela García-Ramos

Biology Faculty Publications

The design of 'hunter' viruses aimed at destroying human immunodeficiency virus (HIV) infected cells is an active area of research that has produced promising results in vitro. Hunters are designed to target exposed viral envelope proteins in the membranes of infected cells, but there is evidence that the hunter may also target envelope proteins of free HIV, inducing virus-virus fusion. In order to predict the effects of this fusion on therapy outcomes and determine whether fusion ability is advantageous for hunter virus design, we have constructed a model to account for the possibility of hunter-HIV fusion. The study was based …

Summer Watering Patterns Of Mule Deer And Differential Use Of Water By Bighorn Sheep, Elk, Mule Deer, And Pronghorn In Utah, Andrew V. Shields

Theses and Dissertations

Changes in the abundance and distribution of free (drinking) water can influence wildlife in arid regions. In the western USA, free water is considered by wildlife managers to be important for bighorn sheep (Ovis canadensis), elk (Cervus elaphus), mule deer (Odocoileus hemionus), and pronghorn (Antilocapra americana). Nonetheless, we lack information on the influence of habitat and landscape features surrounding water sources, including wildlife water developments, and how these features may influence use of water by sexes differently. Consequently, a better understanding of differential use of water by the sexes could influence the conservation and management of those ungulates and water …

Habitat Selection Of Greater Sage-Grouse Centrocercus Urophasianus And Northern River Otters Lontra Canadensis In Utah, Matthew D. Westover

Theses and Dissertations

Greater sage-grouse populations have decreased steadily since European settlement in western North America. Reduced availability of brood-rearing habitat has been identified as a limiting factor for many populations. We used radio-telemetry to acquire locations of sage-grouse broods from 1998 to 2012 in Strawberry Valley, Utah. Using these locations and remotely-sensed imagery, we proceeded to 1) determine which features of brood-rearing habitat could be identified using widely available, fine-scale imagery 2) assess the scale at which sage-grouse selected brood-rearing habitat in our study area, and 3) create a predictive habitat model that could be applied across our large study area to …