Life Sciences Commons^™

An Epitope From Acanthamoeba Castellanii That Cross-React With Proteolipid Protein 139-151-Reactive T Cells Induces Autoimmune Encephalomyelitis In Sjl Mice, Chandirasegaran Massilamany, David Steffan, Jay Reddy

Jay Reddy Publications

We report here that an epitope (aa, 83-95) derived from Acanthamoeba castellanii (ACA) induces clinical signs of experimental autoimmune encephalomyelitis (EAE) in SJL/J mice reminiscent of the disease induced with myelin proteolipid protein (PLP) 139-151. By using IA^s/tetramers, we demonstrate that both ACA 83-95 and PLP 139-151 generate antigen-specific cross-reactive CD4 T cells and the T cells secrete identical patterns of cytokines and induce EAE with a similar severity. These results may provide insights into the pathogenesis of multiple sclerosis and ACA-induced granulomatous encephalitis.

Induction Of Interferon And Interferon Signaling Pathways By Replication Of Defective Interfering Particle Rna In Cells Constitutively Expressing Vesicular Stomatitis Virus Replication Proteins, Debasis Panda, Phat X. Dinh, Lalit Beura, Asit K. Pattnaik

School of Veterinary and Biomedical Sciences: Faculty Publications

We show here that replication of defective interfering (DI) particle RNA in HEK293 cells stably expressing vesicular stomatitis virus (VSV) replication proteins potently activates interferon (IFN) and IFN signaling pathways through upregulation of IFN- promoter, IFN-stimulated response element (ISRE) promoter, and NF-κB promoter activities. Replication of DI particle RNA, not mere expression of the viral replication proteins, was found to be critical for induction of IFN and IFN signaling. The stable cells supporting replication of DI RNA described in this report will be useful in further examining the innate immune signaling pathways and the host cell functions in viral genome …

Towards An Understanding Of The Herpes Simplex Virus Type 1 Latency-Reactivation Cycle, Guey-Chuen Perng, Clinton Jones

School of Veterinary and Biomedical Sciences: Faculty Publications

Infection by herpes simplex virus type 1 (HSV-1) can cause clinical symptoms in the peripheral and central nervous system. Recurrent ocular shedding can lead to corneal scarring and vision loss making HSV-1 a leading cause of corneal blindness due to an infectious agent. The primary site of HSV-1 latency is sensory neurons within trigeminal ganglia. Periodically, reactivation from latency occurs resulting in virus transmission and recurrent disease. During latency, the latency-associated transcript (LAT) is abundantly expressed. LAT expression is important for the latency-reactivation cycle in animal models, in part, because it inhibits apoptosis, viral gene expression, and productive infection. A …

Chronology And Evolution Of The Hiv-1 Subtype C Epidemic In Ethiopia, Damien C. Tully, Charles Wood

Nebraska Center for Virology: Faculty Publications

Objective—To reconstruct the onset date and evolutionary history of the HIV-1 subtype C epidemic in Ethiopia - one of the earliest recorded subtype C epidemics in the world.

Design—HIV-1 C env sequences with a known sampling year isolated from HIV-1 positive patients from Ethiopia between 1984 and 2003.

Methods—Evolutionary parameters including origin and demographic growth patterns were estimated using a Bayesian coalescent-based approach under either strict or relaxed molecular clock models.

Results—Bayesian evolutionary analysis indicated a most recent common ancestor date of 1965 with three distinct epidemic growth phases. Regression analysis of root-to-tip distances revealed a highly similar estimate for …

Enhancement Of Autophagy During Lytic Replication By The Kaposi’S Sarcoma-Associated Herpesvirus Replication And Transcription Activator, Hui-Ju Wen, Zhilong Yang, You Zhou, Charles Wood

Nebraska Center for Virology: Faculty Publications

Autophagy is one of two major degradation systems in eukaryotic cells. The degradation mechanism of autophagy is required to maintain the balance between the biosynthetic and catabolic processes and also contributes to defense against invading pathogens. Recent studies suggest that a number of viruses can evade or subvert the host cell autophagic pathway to enhance their own replication. Here, we investigated the effect of autophagy on the KSHV (Kaposi’s sarcoma-associated herpesvirus) life cycle. We found that the inhibition of autophagy reduces KSHV lytic reactivation from latency, and an enhancement of autophagy can be detected during KSHV lytic replication. In addition, …

Chlorella Viruses Encode Most, If Not All, Of The Machinery To Glycosylate Their Glycoproteins Independent Of The Endoplasmic Reticulum And Golgi, James L. Van Etten, James Gurnon, Giane M. Yanai-Balser, David Dunigan, Michael V. Graves

Nebraska Center for Virology: Faculty Publications

In contrast to all other viruses that use the host machinery located in the endoplasmic reticulum and Golgi to glycosylate their glycoproteins, the large dsDNA-containing chlorella viruses encode most, if not all, of the components to glycosylate their major capsid proteins. Furthermore, all experimental results indicate that glycosylation occurs independent of the endoplasmic reticulum and Golgi. (Review article)

Back To Nature: Ecological Genomics Of Loblolly Pine (Pinus Taeda, Pinaceae), Andrew J. Eckert, Andrew D. Bower, Santiago C. González-Martínez, Jill L. Wegrzyn, Graham Coop, David B. Neale

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Genetic variation is often arrayed in latitudinal or altitudinal clines, reflecting either adaptation along environmental gradients, migratory routes, or both. For forest trees, climate is one of the most important drivers of adaptive phenotypic traits. Correlations of single and multilocus genotypes with environmental gradients have been identified for a variety of forest trees. These correlations are interpreted normally as evidence of natural selection. Here, we use a genome-wide dataset of single nucleotide polymorphisms (SNPs) typed from 1730 loci in 682 loblolly pine (Pinus taeda L.) trees sampled from 54 local populations covering the full-range of the species to examine …

Short Communication: Antiretroviral Therapy Resistance Mutations Present In The Hiv Type 1 Subtype C Pol And Env Regions From Therapy-Naive Patients In Zambia, Sandra Gonzalez, Clement Gondwe, Damien C. Tully, Veenu Minhas, Danielle Shea, Chipepo Kankasa, Tendai M'Soka, Charles Wood

Nebraska Center for Virology: Faculty Publications

The prevalence of antiretroviral therapy (ART) resistance mutations present in HIV-1 subtype C pol and env regions of the proviral DNA was analyzed and compared from therapy-naive individuals before (Cohort A) and after (Cohort B) the availability of free ART in Zambia. Mutations present in sequences published in a previous study from Zambian ART-naive individuals infected with subtype C were analyzed using current parameters for the classification of ART drug resistance and compared with Cohorts A and B. No statistically significant differences were observed when comparing mutations present in the pol and env of these cohorts. However, an increase in …

Primary Gamma-Herpesviral Infection In Zambian Children, Veenu Minhas, Brad P. Brayfield, Kay L. Crabtree, Chipepo Kankasa, Charles D. Mitchell, Charles Wood

Nebraska Center for Virology: Faculty Publications

Background: HHV-8 is closely related to Epstein-Barr virus (EBV), but the clinical presentations of these two infections in early childhood are not well understood. Also, it is not known whether infection by one virus correlates with another. Here, we compare the natural history of infection by these two viruses along with the clinical manifestations and risk factors that are associated with early childhood infection in Zambia, which is an endemic area for HHV-8.

Methods: This study was conducted in a cohort of 12 month old Zambian children (N = 677). Data on socio-economic status and a wide range …

Restricted Genetic Diversity Of Hiv-1 Subtype C Envelope Glycoprotein From Perinatally Infected Zambian Infants, Hong Zhang, Damien C. Tully, Federico G. Hoffmann, Jun He, Chipepo Kankasa, Charles Wood

Nebraska Center for Virology: Faculty Publications

Background: Mother-to-child transmission of HIV-1 remains a significant problem in the resource-constrained settings where anti-retroviral therapy is still not widely available. Understanding the earliest events during HIV-1 transmission and characterizing the newly transmitted or founder virus is central to intervention efforts. In this study, we analyzed the viral env quasispecies of six mother-infant transmission pairs (MIPs) and characterized the genetic features of envelope glycoprotein that could influence HIV-1 subtype C perinatal transmission.

Methodology and Findings: The V1-V5 region of env was amplified from 6 MIPs baseline samples and 334 DNA sequences in total were analyzed. A comparison of …

Subtype-Associated Differences In Hiv-1 Reverse Transcription Affect The Viral Replication, Sergey Iordanskiy, Mackenzie Waltke, Yanjun Feng, Charles Wood

Nebraska Center for Virology: Faculty Publications

Background: The impact of the products of the pol gene, specifically, reverse transcriptase (RT) on HIV-1 replication, evolution, and acquisition of drug resistance has been thoroughly characterized for subtype B. For subtype C, which accounts of almost 60% of HIV cases worldwide, much less is known. It has been reported that subtype C HIV-1 isolates have a lower replication capacity than B; however, the basis of these differences remains unclear.

Results: We analyzed the impact of the pol gene products from HIV-1 B and C subtypes on the maturation of HIV virions, accumulation of reverse transcription products, integration …

Topological Layers In The Hiv-1 Gp120 Inner Domain Regulate Gp41 Interaction And Cd4-Triggered Conformational Transitions, Andrés Finzi, Shi-Hua Xiang, Beatriz Pacheco, Dana-Farber Cancer Institute Wang, Jessica Haight, Aemro Kassa, Brenda Danek, Marie Pancera, Peter D. Kwong, Joseph Sodroski

Nebraska Center for Virology: Faculty Publications

The entry of human immunodeficiency virus (HIV-1) into cells is initiated by binding of the gp120 exterior envelope glycoprotein to the receptor, CD4. How does CD4 binding trigger conformational changes in gp120 that allow the gp41 transmembrane envelope glycoprotein to mediate viral-cell membrane fusion? The transition from the unliganded to the CD4-bound state is regulated by two potentially flexible topological layers (layers 1 and 2) in the gp120 inner domain. Both layers apparently contribute to the noncovalent association of unliganded gp120 with gp41. After CD4 makes initial contact with the gp120 outer domain, layer 1-layer 2 interactions strengthen gp120-CD4 binding …

Illustrated Beetles Of Quail Ridge Reserve, Ann Donohue

Department of Entomology: Distance Master of Science Projects

Introduction

The Quail Ridge Reserve is part of the University of California Natural Reserve System and is located in Napa County on a peninsula at the southern end of Lake Berryessa. The reserve is composed of land owned by the US Bureau of Land Management, US Bureau of Reclamation, Quail Ridge Wilderness Conservation, California Department of Fish and Game, and UC Regents. The University NRS continues to expand on the reserve as private property owners become willing to sell parcels, thereby increasing the size of this amazing protected wildlife and ecological study site.

Vegetation on Quail Ridge consists primarily of …

Cardiovascular Disease Risk Factors And Associations With Indicators Of Body Fat, Diet, And Physical Activity In U.S. Children Ages 6–11, Melissa A. Masters

Department of Nutrition and Health Sciences: Dissertations, Theses, and Student Research

Research was conducted to determine the prevalence of cardiovascular disease risk factors in U.S. children ages 6-11 and associations with body fat, diet, and physical activity. Data for 685 children ages 6-11 was obtained from the National Health and Nutrition Examination Survey (NHANES). NHANES data was examined to determine the prevalence of cardiovascular disease risk factors in these children, the impact of indicators of body fat on cardiovascular disease risk factors, the association between cardiovascular disease risk factors and dietary components, and the relationship between physical activity and cardiovascular disease risk factors among U.S. children. Children were also evaluated for …

Nutrition-Related Practices And Attitudes Of Kansas Skipped-Generation(S) Caregivers And Their Grandchildren, Mary Meck Higgins, Bethany J. Murray

Department of Nutrition and Health Sciences: Faculty Publications

Despite growing numbers, the nutrition practices and attitudes of skipped-generation(s) kinship caregivers regarding feeding the dependent children in their care have not been examined. In this qualitative study, transcriptions of semi-structured interviews with 19 female and four male skipped-generation(s) Kansas caregivers (ages 47 to 80, 92% non-Hispanic whites, 83% female, 78% grandparents and 22% great-aunt or great-grandparent caregivers; caring for a range of one to four children, ages three to 18, for an average of nine years) were content analyzed for how their nutrition-related practices and attitudes had changed since parenting the first time. Sub-themes regarding practices included: being more …

Liver Injury In Acute Fatty Liver Of Pregnancy: Possible Link To Placental Mitochondrial Dysfunction And Oxidative Stress, Sathish Kumar Natarajan, Kavitha R. Thangaraj, C. E. Eapen, Anup Ramachandran, Ashis Mukhopadhya, Mathews Mathai, Lakshmi Seshadri, Abraham Peedikayil, Banumathi Ramakrishna, Kunnissery A. Balasubramanian

Department of Nutrition and Health Sciences: Faculty Publications

Acute fatty liver of pregnancy (AFLP) is a rare disorder which is fatal if not recognized and treated early. Delivery of the feto-placental unit results in dramatic improvement in maternal liver function, suggesting a role for the placenta. However, the mechanisms by which defects in the fetus or placenta lead to maternal liver damage are not well understood and form the focus of this study. Placenta and serum were obtained at delivery from patients with AFLP, and placental mitochondria and peroxisomes were isolated. Placental mitochondrial function, oxidative stress, and fatty acid composition as well asserumantioxidants, oxidativeandnitrosative stress markers,andfatty acid analysis …

Structural Restoration Of Nematodes And Acanthocephalans Fixed In High Percentage Alcohol Using Dess Solution And Rehydration, Soraya Naem, Christopher Pagan, Steven A. Nadler

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Ninety-five percent ethanol is the most widely used field and laboratory preservative for nematodes and other helminth specimens intended for use in molecular systematics. Preservation of nematodes in high-concentration alcohols results in structural dehydration artifacts, including shrinkage and body surface distortions sufficient to obscure features required for morphological identification and analysis, thereby compromising precise morphometrics. However, treating dehydrated nematodes using a solution of DMSO, disodium EDTA, and NaCl, followed by rehydration in water produces marked improvements in specimen shape and surface features, resulting from diffusion of water into the tissues and pseudocoelom as the internal salt concentration is reduced. Following …

Soil-Transmitted Helminthiases: Implications Of Climate Change And Human Behavior, Haylee J. Weaver, John M. Hawdon, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Soil-transmitted helminthiases (STHs) collectively cause the highest global burden of parasitic disease after malaria and are most prevalent in the poorest communities, especially in sub-Saharan Africa. Climate change is predicted to alter the physical environment through cumulative impacts of warming and extreme fluctuations in temperature and precipitation, with cascading effects on human health and wellbeing, food security and socioeconomic infrastructure. Understanding how the spectrum of climate change effects will influence STHs is therefore of critical importance to the control of the global burden of human parasitic disease. Realistic progress in the global control of STH in a changing climate requires …

Modeling The Economic Impact Of Feral Swine-Transmitted Foot-And- Mouth Disease: A Case Study From Missouri, Tyler Cozzens, Karen Gebhardt, Stephanie A. Shwiff, Mark W. Lutman, Kerri Pedersen, Seth Swafford

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive feral swine combine a number of characteristics (e.g., high mobility, high fecundity, destructive behavior, reservoir of diseases, etc.) that make them one of the most serious wildlife threats to American agriculture. Additionally, feral swine are susceptible to foot-and-mouth disease (FMD) infection and could play a significant role in spreading and maintaining FMD if it was introduced to the U.S. Outbreaks of FMD also have devastating economic impacts and cause the loss of billions of dollars to the agricultural economy. Problems associated with spread and control would be exacerbated if FMD was contracted and spread by feral swine, threatening the …

Exclusion Fencing For Feral Hogs At White-Tailed Deer Feeders, Justin M. Rattan, Billy J. Higginbotham, David B. Long, Tyler A. Campbell

United States Department of Agriculture Wildlife Services: Staff Publications

Management programs aimed at white-tailed deer (Odocoileus virginianus) production often include the use of feeders, either to deliver supplemental feed or bait. However, much of the feed placed into deer feeders is consumed by non-target species, such as feral hogs (Sus scrofa). Our objectives were to compare three exclusion fence designs at deer feeders for their ability to restrict feral hog visitation and enable white-tailed deer visitation. Our high fence design consisted of 86 cm high graduated paneling. Our medium fence design consisted of 76 cm high, 10´10 cm paneling. Our low height design consisted of …

Response Of Deer To Containment By A Poly-Mesh Fence For Mitigating Disease Outbreaks, Michael J. Lavelle, Justin W. Fischer, Scott E. Hygnstrom, Joshua J. White, Aaron M. Hildreth, Gregory E. Phillips, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Rapidly deployable and effective methods are needed to contain free-ranging deer (Odocoileus spp.) during acute disease outbreaks. We evaluated efficacy of a 2.1-m-tall polypropylene mesh (poly-mesh) fence for containing ≥15 free-ranging white-tailed deer (O. virginianus) within a 42-ha area in eastern Nebraska, USA. We observed a 99% decrease in deer leaving the enclosure area after we installed fencing (1 deer jumped; 0.02 deer/hr) compared with prefence rates (5.26 deer/hr). However, 8 deer (53% of censused population) escaped the enclosure during a census drive after our study. Poly-mesh fencing may be effective in temporarily containing free-ranging deer during …

Reporting Difference For Colored Patagial Tags On Ring-Billed Gulls, Thomas W. Seamans, Scott F. Beckerman, John W. Hartmann, James A. Rader, Bradley F. Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

The possible role of tag color in mediating behaviors that could bias resighting rate has not been examined. In a study that began in 2007, we marked 725 ring-billed gulls (Larus delawarensis) with Bondcote royal blue, green, yellow, or orange patagial tags. Reports we gathered over 2 years indicated approximately a 3.4:1 bias in resighting rate toward yellow or orange tags. The observed bias is inconsistent with color-associated visibility bias or differential mortality among color-tagged breeding adults. Potential behavioral effects of tag color on individuals and conspecifics should be considered by biologists when planning marking studies.

Muellerius Capillaris Dominates The Lungworm Community Of Bighorn Sheep At The National Bison Range, Montana, Vanessa O. Ezenwa, Alicia M. Hines, Elizabeth A. Archie, Eric P. Hoberg, Ingrid M. Asmundsson, John T. Hogg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Lungworm infections are common among bighorn sheep (Ovis canadensis) in North America, and the predominant species reported are Protostrongylus stilesi and P. rushi. The only records of another lungworm species, Muellerius capillaris, infecting bighorns come from South Dakota, USA. At the National Bison Range (NBR), Montana, USA we found that across six sampling periods, 100% of wild bighorn sheep surveyed were passing first-stage dorsal-spined larvae (DSL) which appeared to be consistent with M. capillaris. By contrast, only 39%or fewer sheep were passing Protostrongylus larvae. Using molecular techniques, we positively identified the DSL from the NBR …

Robert Edward Tucker, Sr. Papers, Zach S. Henderson Library Special Collections

Finding Aids

This collection consists of Robert Edward Tucker, Sr.’s ornithology field notes and journals concerning observations in the Chatham County area & the Georgia coastal islands. Most materials are handwritten and include daily observations from 1984-1997.

Find this collection in the University Libraries' catalog.

How Specialists Can Be Generalists: Resolving The "Parasite Paradox" And Implications For Emerging Infectious Disease, Salvatore J. Agosta, Niklas Janz, Daniel R. Brooks

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The parasite paradox arises from the dual observations that parasites (broadly construed, including phytophagous insects) are resource specialists with restricted host ranges, and yet shifts onto relatively unrelated hosts are common in the phylogenetic diversification of parasite lineages and directly observable in ecological time. We synthesize the emerging solution to this paradox: phenotypic flexibility and phylogenetic conservatism in traits related to resource use, grouped under the term ecological fitting, provide substantial opportunities for rapid host switching in changing environments, in the absence of the evolution of novel host-utilization capabilities. We discuss mechanisms behind ecological fitting, its implications for defining specialists …

Targeted Deletion Of Hepatocyte Abca1 Leads To Very Low Density Lipoprotein Triglyceride Overproduction And Low Density Lipoprotein Hypercatabolism, Soonkyu Chung, Jenelle M. Timmins, Myngan Duong, Chiara Degirolamo, Shunxing Rong, Janet K. Sawyer, Roshni R. Singaraja, Michael R. Hayden, Nobuyo Maeda, Lawrence L. Rudel, Gregory S. Shelness, John S. Parks

Department of Nutrition and Health Sciences: Faculty Publications

Loss of ABCA1 activity in Tangier disease (TD) is associated with abnormal apoB lipoprotein (Lp) metabolism in addition to the complete absence of high density lipoprotein (HDL). We used hepatocyte-specific ABCA1 knock-out (HSKO) mice to test the hypothesis that hepatic ABCA1 plays dual roles in regulating Lp metabolism and nascent HDL formation. HSKO mice recapitulated the TD lipid phenotype with postprandial hypertriglyceridemia, markedly decreased LDL, and near absence of HDL. Triglyceride (TG) secretion was 2-fold higher in HSKO compared with wild type mice, primarily due to secretion of larger TG-enriched VLDL secondary to reduced hepatic phosphatidylinositol 3-kinase signaling. HSKO mice …

First Report Of Viral Pathogens Wssv And Ihhnv In Argentine Crustaceans [Note], Sergio Roberto Martorelli, Robin M. Overstreet, Jean A. Jovanovich Alvillar

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The pathogenic penaeid shrimp viruses white spot syndrome virus (WSSV) and infectious hypodermal and hematopoietic necrosis virus (IHHNV) are reported for the first time from Argentina. They both occurred in wild crustaceans in Bahia Blanca Estuary, with WSSV detected by polymerase chain reaction (pCR) or real time quantitative pCR (qpCR) methods as infecting samples as high as 56% of the penaeid Artemesia longinaris Bate, 1888, 67% of the grapsoid Cyrtograpsus angulatus dana, 1851, and 40% of the introduced palaemonid Palaemon macrodactylus Rathbun, 1902. The highest detected copy number was 39,600 copies/μg dNA. IHHNV was tested for using pCR in …

Metastability And Plasticity In A Conceptual Model Of Neurons, Bo Deng

Department of Mathematics: Faculty Publications

For a new class of neuron models we demonstrate here that typical membrane action potentials and spike-bursts are only transient states but appear to be asymptotically stable; and yet such metastable states are plastic — being able to dynamically change from one action potential to another with different pulse frequencies and from one spike-burst to another with different spike-per-burst numbers. The pulse and spike-burst frequencies change with individual ions’ pump currents while their corresponding metastable-plastic states maintain the same transmembrane voltage and current profiles in range. It is also demonstrated that the plasticity requires two one-way ion pumps operating in …

How Birds Combat Ectoparasites, Dale H. Clayton, Jennifer A. H. Koop, Christopher W. Harbison, Brett R. Moyer, Sarah E. Bush

Harold W. Manter Laboratory of Parasitology: Library Materials

Birds are plagued by an impressive diversity of ectoparasites, ranging from feather-feeding lice, to feather-degrading bacteria. Many of these ectoparasites have severe negative effects on host fitness. It is therefore not surprising that selection on birds has favored a variety of possible adaptations for dealing with ectoparasites. The functional significance of some of these defenses has been well documented. Others have barely been studied, much less tested rigorously. In this article we review the evidence--or lack thereof--for many of the purported mechanisms birds have for dealing with ectoparasites. We concentrate on features of the plumage and its components, as well …

Observations Of Reproduction In Mountain Lions From Nebraska, Sam Wilson, Justin D. Hoffman, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

Occurrences of mountain lions (Puma concolor) in Nebraska have been steadily increasing; however, reproductive activity in mountain lions has not been documented in the state. We present the first evidence of mountain lion reproduction in Nebraska since mountain lions recolonized the state in the early 1990s. On 28 February 2007, a spotted kitten was hit by a vehicle in northwestern Nebraska; and based on body length and weight, we estimate its age at 3.9 months. On 20 December 2008, a female mountain lion and spotted kitten were photographed in the northwestern part of the state. On 9 May …