Life Sciences Commons^™

Expression Of Sorl1 And A Novel Sorl1 Splice Variant In Normal And Alzheimers Disease Brain, Karrie E. Grear, I-Fang Ling, James F. Simpson, Jennifer L. Furman, Christopher R. Simmons, Shawn L. Peterson, Frederick A. Schmitt, William R. Markesbery, Qiang Liu, Julia E. Crook, Steven G. Younkin, Guojun Bu, Steven Estus

Physiology Faculty Publications

BACKGROUND: Variations in sortilin-related receptor (SORL1) expression and function have been implicated in Alzheimers Disease (AD). Here, to gain insights into SORL1, we evaluated SORL1 expression and splicing as a function of AD and AD neuropathology, neural gene expression and a candidate single nucleotide polymorphism (SNP).

RESULTS: To identify SORL1 splice variants, we scanned each of the 46 internal SORL1 exons in human brain RNA samples and readily found SORL1 isoforms that lack exon 2 or exon 19. Quantification in a case-control series of the more abundant isoform lacking exon 2 (delta-2-SORL1), as well as the "full-length" SORL1 (FL-SORL1) isoform …

The Importance Of Fallback Foods In Primate Ecology And Evolution, Paul J. Constantino, Barth W. Wright

Biological Sciences Faculty Research

The role of fallback foods in shaping primate ranging, socioecology, and morphology has recently become a topic of particular interest to biological anthropologists. Although the use of fallback resources has been noted in the ecological and primatological literature for a number of decades, few attempts have been made to define fallback foods or to explore the utility of this concept for primate evolutionary biologists and ecologists. As a preface to this special issue of the American Journal of Physical Anthropology devoted to the topic of fallback foods in primate ecology and evolution, we discuss the development and use of the …

Annis, Lena Grey, 1897-1996 - Collection (Mss 275), Manuscripts & Folklife Archives

Manuscript Collection Finding Aids

Finding aid only for Manuscripts Collection 275. Letters sent to Lena Grey Annis from family members and friends, chiefly related to farm and family life in Butler County, Kentucky in the mid-to-late-twentieth century.

Diet Composition Of Swordfish, Xiphias Gladius, Within The Straits Of Florida, Amy Marie Heemsoth

HCNSO Student Theses and Dissertations

A diet study of swordfish, Xiphias gladius, was conducted in the Straits of Florida from April 2007 to December 2008. The stomachs of 131 swordfish were analyzed. Thirteen species of teleosts, three species of cephalopods, and one species of crustacean were observed in the diet. Cephalopods dominated the swordfish diet by weight (73.38%), number (69.90%), and occurrence (80.91%) and ranked highest in importance in the diet when calculating the index of relative importance (IRI). Teleosts followed by weight (25.16%), number (26.34%), occurrence (68.18%), and IRI (3,510.97). The prey species with the greatest dietary importance was Illex sp followed by …

Decreased Replication Origin Activity In Temporal Transition Regions, Zeqiang Guan, Christina M. Hughes, Settapong Kosiyatrakul, Paolo Norio, Ranjan Sen, Steven Fiering

Dartmouth Scholarship

In the mammalian genome, early- and late-replicating domains are often separated by temporal transition regions (TTRs) with novel properties and unknown functions. We identified a TTR in the mouse immunoglobulin heavy chain (Igh) locus, which contains replication origins that are silent in embryonic stem cells but activated during B cell development. To investigate which factors contribute to origin activation during B cell development, we systematically modified the genetic and epigenetic status of the endogenous Igh TTR and used a single-molecule approach to analyze DNA replication. Introduction of a transcription unit into the Igh TTR, activation of gene transcription, …

Rna-Guided Rna Cleavage By A Crispr Rna-Cas Protein Complex, Brenton R. Graveley, Sara Olson, Michael O. Duff

UCHC Articles - Research

Compelling evidence indicates that the CRISPR-Cas system protects prokaryotes from viruses and other potential genome invaders. This adaptive prokaryotic immune system arises from the clustered regularly interspaced short palindromic repeats (CRISPRs) found in prokaryotic genomes, which harbor short invader-derived sequences, and the CRISPR-associated (Cas) protein-coding genes. Here we have identified a CRISPR-Cas effector complex that is comprised of small invader-targeting RNAs from the CRISPR loci (termed prokaryotic silencing (psi)RNAs) and the RAMP module (or Cmr) Cas proteins. The psiRNA-Cmr protein complexes cleave complementary target RNAs at a fixed distance from the 3' end of the integral psiRNAs. In Pyrococcus furiosus …

Identifying Sub-Tropical Grass Seedlings, Brad Wintle, Geoff Moore, Phil Nichols

Bulletins 4000 -

There is considerable interest in growing sub-tropical (or warm season) perennial grasses for out-of-season green feed, especially on the south coast and in the northern agricultural region (NAR). They consist of two types: creeping grasses, which spread by either above ground runners (stolons) or below ground runners (rhizomes) and bunch grasses, which are tufted and do not spread by runners.

The main species sown include Panic grass, Rhodes grass, Kikuyu, Setaria, Signal grass, Digit grass, and Bambatsi panic and are often sown as a mixture, comprising 2 or more species. This bulletin describes how to identify these grasses at the …

The Effect Of Floor Density On Growth Performance And Carcass Characteristics Of French Guinea Broilers, Samuel N. Nahashon, Nathaniel Adefope, Abravi Amenyenu, James E. Tyus Ii, D. Wright

Agricultural and Environmental Sciences Faculty Research

The floor density required for optimal growth performance of different avian species and varieties is highly variable. Little is known of the required floor density for optimum performance of the French guinea fowl (Numida meleagris) broiler. The objective of this study was to assess the effect of varying floor densities on growth performance and carcass characteristics of the French guinea broiler. In 3 replicates, 687 one-day-old French guinea keets were weighed individually and randomly assigned to floor pens covered with pine wood shavings at 69, 60, 53, and 47 birds/pen, equivalent to densities of 15.6, 13.6, 12, and 10.7 birds/m2, …

Hexapod Herald - Vol. 21, No. 6, November 2009

Hexapod Herald and Other Entomology Department Newsletters

Welcome

Congratulations

Publications

Grants

Meet and Off-Campus Student

Student News

From the Office

Travel

Effects Of Participation In Inquiry Science Workshops And Follow-Up Activities On Middle School Science Teachers' Content Knowledge, Teacher-Held Misconceptions, And Classroom Practices, Linda F. Cepeda

Electronic Theses and Dissertations

An important aspect of developing science literacy for all students is developing science-literate teachers. With the implementation of the No Child Left Behind Act, many middle school teachers found themselves in a position where they were no longer qualified to teach middle school science. This study was designed to help science teachers increase their science content knowledge, identify and resolve misconceptions/errors they may have, and assist them in their teaching by providing strategies for inquiry-based teaching, science laboratory exercises, and science equipment.

Teachers enrolled in biology courses offered by the Rocky Mountain Middle School Math and Science Partnership participated in …

Exhaustive Exercise Training Enhances Aerobic Capacity In American Alligator (Alligator Mississippiensis), John Eme, Tomasz Owerkowicz, June Gwalthney, Jason M. Blank, Bryan C. Rourke, James W. Hicks

Biological Sciences

The oxygen transport system in mammals is extensively remodelled in response to repeated bouts of activity, but many reptiles appear to be ‘metabolically inflexible’ in response to exercise training. A recent report showed that estuarine crocodiles (Crocodylus porosus) increase their maximum metabolic rate in response to exhaustive treadmill training, and in the present study, we confirm this response in another crocodilian, American alligator (Alligator mississippiensis). We further specify the nature of the crocodilian training response by analysing effects of training on aerobic [citrate synthase (CS)] and anaerobic [lactate dehydrogenase (LDH)] enzyme activities in selected skeletal muscles, …

Kentucky Warbler (Vol. 85, No. 4), Kentucky Library Research Collections

The Kentucky Warbler

No abstract provided.

Ontology-Driven Provenance Management In Escience: An Application In Parasite Research, Satya S. Sahoo, D. Brent Weatherly, Raghava Mutharaju, Pramod Anantharam, Amit P. Sheth, Rick L. Tarleton

Kno.e.sis Publications

Provenance, from the French word “provenir”, describes the lineage or history of a data entity. Provenance is critical information in scientific applications to verify experiment process, validate data quality and associate trust values with scientific results. Current industrial scale eScience projects require an end-to-end provenance management infrastructure. This infrastructure needs to be underpinned by formal semantics to enable analysis of large scale provenance information by software applications. Further, effective analysis of provenance information requires well-defined query mechanisms to support complex queries over large datasets. This paper introduces an ontology-driven provenance management infrastructure for biology experiment data, as part …

Assessing Animal Welfare: Different Philosophies, Different Scientific Approaches, David Fraser

Assessment of Animal Welfare Collection

Attempts to improve animal welfare have commonly centered around three broad objectives: (1) to ensure good physical health and functioning of animals, (2) to minimize unpleasant ‘‘affective states’’ (pain, fear, etc.) and to allow animals normal pleasures, and (3) to allow animals to develop and live in ways that are natural for the species. Each of these objectives has given rise to scientific approaches for assessing animal welfare. An emphasis on health and functioning has led to assessment methods based on rates of disease, injury, mortality, and reproductive success. An emphasis on affective states has led to assessment methods based …

Cow Preference And Usage Of Free Stalls Compared With An Open Pack Area, J. A. Fregonesi, M. A. G. Von Keyserlingk, D. M. Weary

Housing and Confinement of Farm Animals Collection

Free-stall housing systems are designed to provide a comfortable and hygienic lying area, but some aspects of stall design may restrict usage by cows. The aim of this study was to compare free-stall housing with a comparable lying area (open pack) without stall partitions. We predicted that cows would spend more time lying down and standing in the bedded area when provided access to an open pack than when in free stalls. We also predicted that cows would spend less time standing outside of the lying area and less time perching with the front 2 hooves in the lying area …

Prevalence And Risk Factors For Skin Lesions On Legs Of Dairy Cattle Housed In Freestalls In Norway, C. Kielland, L. E. Ruud, A. J. Zanella, O. Østerås

Housing and Confinement of Farm Animals Collection

Appropriate indoor housing facilities for dairy cattle promote improved animal welfare. Skin alterations are an indicator of dysfunctional housing. The purpose was to determine the relationship between different housing design and skin lesions, hence providing farmers more insight into how to reduce the occurrence of lesions. A cross-sectional study was conducted on 2,335 animals in 232 Norwegian freestall-housed dairy cattle from September 2006 to June 2007. A model was established to investigate risk factors related to the presence of lesions including hair loss, swelling, and wounds on the legs of dairy cattle. Separate models were developed to investigate risk factors …

Surgical Removal Of Right-To-Left Cardiac Shunt In The American Alligator (Alligator Mississippiensis) Causes Ventricular Enlargement But Does Not Alter Apnoea Or Metabolism During Diving, John Eme, June Gwalthney, Jason M. Blank, Tomasz Owerkowicz, Gildardo Barron, James W. Hicks

Biological Sciences

Crocodilians have complete anatomical separation between the ventricles, similar to birds and mammals, but retain the dual aortic arch system found in all non-avian reptiles. This cardiac anatomy allows surgical modification that prevents right-to-left (R–L) cardiac shunt. A R–L shunt is a bypass of the pulmonary circulation and recirculation of oxygen-poor blood back to the systemic circulation and has often been observed during the frequent apnoeic periods of non-avian reptiles, particularly during diving in aquatic species. We eliminated R–L shunt in American alligators (Alligator mississippiensis) by surgically occluding the left aorta (LAo; arising from right ventricle) upstream and …

Yeast Ste23p Shares Functional Similarities With Mammalian Insulin-Degrading Enzymes, Benjamin Alper, Jarrad W. Rowse, Walter K. Schmidt

Chemistry & Physics Faculty Publications

The S. cerevisiae genome encodes two M16A enzymes: Axl1p and Ste23p. Of the two, Ste23p shares significantly higher sequence identity with M16A enzymes from other species, including mammalian insulin-degrading enzymes (IDEs). In this study, recombinant Ste23p and R. norvegicus IDE (RnIDE) were isolated from E. coli, and their enzymatic properties compared. Ste23p was found to cleave established RnIDE substrates including the amyloid-β peptide (Aβ 1-40) and insulin B chain. A novel internally quenched fluorogenic substrate (Abz-SEKKDNYIIKGVnitroY-OH) based on the polypeptide sequence of the yeast P2 a-factor mating propheromone was determined to be a suitable substrate for …

Fisheries Research Report No. 195 - Compliance Program Evaluation And Optimisation In Commercial And Recreational Western Australian Fisheries, Timothy J. Green, John P. Mckinlay

Fisheries Research Reports

Final FRDC Report – Project Number 2001/069

Objectives:

1. To undertake data collection in order to measure the level of compliance and enforcement across the range of input and output managed fisheries in Western Australia, with a view to optimising the efficiency and effectiveness of the overall compliance program.

2. In conjunction with representatives from national fisheries compliance groups, to develop national standards for the collection and reporting of fishery-specific enforcement activity levels and compliance rates.

3. To determine how levels of enforcement and compliance vary spatially and temporally, including an examination of how the level and type of enforcement …

Fisheries Research Report No.196 - Management Of Bioeroding Sponges In Wild Stocks Of Pinctada Maxima In Western Australia, Sabine Daume, Jane Fromont, Anthony M. Hart

Fisheries Research Reports

Final FRDC Report – Project 2005/074

The Western Australian fishery is the only remaining significant fishery for pearl oysters in the world and comprises most of the exported pearl product of Australia, currently worth around $125 million annually. The majority of pearl shells used to culture pearls come from the pearling beds in the inshore waters near Broome. The fishery for pearl oysters preferentially targets smaller ‘culture’ shell (4-5 years age class, 120mm - 160mm shell length) that are more suitable for growing pearls, leaving larger MOP oysters (6+ age class, 175mm+) on the fishing grounds.

Silver-lipped pearl oysters (Pinctada …

On The Zoological Geography Of The Malay Archipelago (1859), Alfred Russel Wallace

Alfred Russel Wallace Classic Writings

No abstract provided.

The Development And Role Of Peripheral Auditory Structures In Otocinclus Affinis, Sri Kiran Kumar Reddy Botta

Masters Theses & Specialist Projects

Loricariidae is a very diverse family of catfishes found primarily in the Amazon River basin. These catfishes have a unique characteristic feature of having fenestrae (holes) in the skull region (compound pterotic bone) adjacent to their bi-lobed swim bladder. Since the swim bladders and the compound pterotic may act as an external ear for hearing in this taxon, I hypothesized that these swim bladders structures have an acoustical functional in the loricariid Otocinclus affinis. In order to understand the development of these structures in O. affinis, I first monitored the ontogeny of the compound pterotic bone by clearing …

Effect Of Different Schedules Of Baby Corn (Zea Mays L.) Harvests On Baby Corn Yield, Grain Yield, And Economic Profit Value, Zheng Wang

Masters Theses & Specialist Projects

Maize (Zea mays L.) ranks third as a food crop after wheat and rice and is characterized not only as a cereal crop but also as a vegetable. Maize used as a vegetable is known as “baby corn”. Baby corn consists of unfertilized young ears harvested 2 or 3 days after silk emergence. The present study was implemented in 2009 at Western Kentucky University Agriculture Research and Education Center (36.93 N, 86.47 E) in Bowling Green, Kentucky. The purpose of the study was to compare the effect of different schemes of harvest on baby corn (BC) yield, grain maize (GM) …

E Unibus Plurum: Genomic Analysis Of An Experimentally Evolved Polymorphism In Escherichia Coli, Margie A. Kinnersley, William E. Holben, Frank Rosenzweig

Biological Sciences Faculty Publications

Microbial populations founded by a single clone and propagated under resource limitation can become polymorphic. We sought to elucidate genetic mechanisms whereby a polymorphism evolved in Escherichia coli under glucose limitation and persisted because of cross-feeding among multiple adaptive clones. Apart from a 29 kb deletion in the dominant clone, no large-scale genomic changes distinguished evolved clones from their common ancestor. Using transcriptional profiling on co-evolved clones cultured separately under glucose-limitation we identified 180 genes significantly altered in expression relative to the common ancestor grown under similar conditions. Ninety of these were similarly expressed in all clones, and many of …

Ribosomal Protein L10 Is Encoded In The Mitochondrial Genome Of Many Land Plants And Green Algae, Jeffrey P. Mower, Linda Bonen

Center for Plant Science Innovation: Faculty Publications

Background: The mitochondrial genomes of plants generally encode 30-40 identified protein-coding genes and a large number of lineage-specific ORFs. The lack of wide conservation for most ORFs suggests they are unlikely to be functional. However, an ORF, termed orf-bryo1, was recently found to be conserved among bryophytes suggesting that it might indeed encode a functional mitochondrial protein.

Results: From a broad survey of land plants, we have found that the orf-bryo1 gene is also conserved in the mitochondria of vascular plants and charophycean green algae. This gene is actively transcribed and RNA edited in many flowering plants. Comparative sequence …

An Anytime Algorithm For Computing Inconsistency Measurement, Yue Ma, Guilin Qi, Guohui Xiao, Pascal Hitzler, Zuoquan Lin

Computer Science and Engineering Faculty Publications

Measuring inconsistency degrees of inconsistent knowledge bases is an important problem as it provides context information for facilitating inconsistency handling. Many methods have been proposed to solve this problem and a main class of them is based on some kind of paraconsistent semantics. In this paper, we consider the computational aspects of inconsistency degrees of propositional knowledge bases under 4-valued semantics. We first analyze its computational complexity. As it turns out that computing the exact inconsistency degree is intractable, we then propose an anytime algorithm that provides tractable approximation of the inconsistency degree from above and below. We show that …

Birds Of The Rocky Mountains—Frontmatter, Paul A. Johnsgard

Birds of the Rocky Mountains by Paul A. Johnsgard

Cover

Jacket copy

Title page

Copyright & funders

Contents

List of Figures

List of Plates

Preface and Acknowledgments

Genetic Relationship Between Longevity And Objectively Or Subjectively Assessed Performance Traits In Sheep Using Linear Censored Models, W. Mekkaway, Rainer Roehe, Ronald M. Lewis, M. H. Davies, L. Bünger, G. Simm, W. Haresign

Department of Animal Science: Faculty Publications

Genetic parameters of longevity in crossbred mule ewes, and genetic relationships among longevity, growth, body composition, and subjectively assessed traits on mule lambs and ewes have been estimated using Bayesian linear censored models. Additionally, the genetic associations between longevity and culling reasons were examined. Data comprised 1,797 observations of mule ewes for longevity, culling reasons, growth, body composition, mouth scores, and type traits. Longevity was defined as the time (in years) from 2 yr of age (the age at first lambing of most ewes) to culling or death. Censored data (i.e., observations for which only the lower bound of the …

Current And Future Food Demand In Western Australia. Module 1 Scoping Study, Andrew Weinert, Robert R. Rouda

Farm Systems and Economics published reports

Maintaining and growing our food industries are priorities of the Western Australian Government and its Department of Agriculture and Food, Western Australia (DAFWA). Understanding our current food consumption levels, imports, exports and production limitations is critical to the formulation of effective agricultural and food polices.

The WA food industries are affected by several factors that include previous domestic policies and market instruments; general lack of scale; geographical isolation; access to suitable land and water; the availability and use of new technology, communication, processing and transport infrastructure that facilitate efficient marketing; sales and administration; social factors; international tariffs and other trade …

Little Bluestem In The Landscape, Heidi Kratsch, Graham Hunter

CWEL Extension Fact Sheets

No abstract provided.