Life Sciences Commons^™

Report Of The Working Group On Animal Distress In The Laboratory, Marilyn Brown, Larry Carbone, Kathleen Conlee, Marian Dawkins, Ian J. Duncan, David Fraser, Gilly Griffin, Victoria A. Hampshire, Lesley A. Lambert, Joy A. Mench, David Morton, Jon Richmond, Bernard E. Rollin, Andrew N. Rowan, Martin L. Stephens, Hanno Würbel

Laboratory Experiments Collection

Finding ways to minimize pain and distress in research animals is a continuing goal in the laboratory animal research field. Pain and distress, however, are not synonymous, and often measures that alleviate one do not affect the other. Here, the authors provide a summary of a meeting held in February 2004 that focused on distress in laboratory animals. They discuss the difficulties associated with defining ‘distress,’ propose methods to aid in recognizing and alleviating distressful conditions, and provide recommendations for animal research conduct and oversight that would minimize distress experienced by laboratory animals.

Mother-Young Recognition In An Ungulate Hider Species: A Unidirectional Proce, Marco V.G. Torriani, Elisabetta Vannoni, Alan G. Mcelligott

Veterinary Science and Medicine Collection

Parent‐offspring recognition is usually crucial for survival of young. In mammals, olfaction often only permits identification at short range, and vocalizations are important at longer distances. Following and hiding antipredator strategies found in newborn mammals may also affect parental recognition mechanisms. We investigated mother‐offspring recognition in fallow deer, an ungulate hider species. We analyzed the structure of adult female and fawn contact calls to determine whether they are individually distinctive and tested for mother‐offspring recognition. Only females (and not fawns) have individualized vocalizations, with the fundamental frequency as the most distinctive parameter. Playback experiments showed that fawns can distinguish the …

Fisheries Research Report No. 158 - An Assessment Of The Blue Swimmer Crab Fishery In Geographe Bay, Lynda M. Bellchambers, K. D. Smith, D. Harris

Fisheries Research Reports

The study was undertaken to provide detailed information on blue swimmer crabs in Geographe Bay so that the recreational and commercial fishery issues could be addressed using more accurate data than was previously available. A ministerial decision that banned commercial fishing for blue swimmer crabs in Geographe Bay was made in January 2005 while this study was underway. The intention of this report was to provide a summary of information on crab stocks in the region, not to alter the current management arrangements. This report describes experimental sampling, commercial catch statistics, commercial catch monitoring and surveys of recreational fishers to …

Morphological And Phylogenetic Description Of An Unusual Amphidinium (Dinophyceae) Species, Tyler Cyronak, Isaac R. Santos

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Amphidinium carterae, an important harmful algal species that produces powerful antifungal and hemolytic compounds (amphidinols) and cytotoxic macrolides (amphidinolides) is ubiquitous in coastal waters. Samples from coral rubble contained an unusual and previously unreported Amphidinium (D2) with a circular outline. Genetic analysis of clone D2 of this species, involving the sequencing of large subunit (LSU) rDNA, revealed a relationship between Amphidinium sp. D2 and both A. carterae and A. massartii. However, morphological and genetic differences suggest that Amphidinium sp. D2 is not conspecific with A. carterae or A. massartii. Further studies to describe this species are presently …

Molecularly Cloned Shiv-1157ipd3n4: A Highly Replication- Competent, Mucosally Transmissible R5 Simian-Human Immunodeficiency Virus Encoding Hiv Clade C Env, R. J. Song, A.-L. Chenine, R. A. Rasmussen, C. R. Ruprecht, S. Mirshahidi, D. R. Grisson, W. Xu, J. B. Whitney, L. M. Goins, H. Ong, P.-L. Li, E. Shai-Kobiler, T. Wang, C. M. Mccann, Hong Zhang, Charles Wood, C. Kankasa, W. E. Secor, H. M. Mcclure, E. Strobert, J. G. Else, R. M. Ruprecht

Nebraska Center for Virology: Faculty Publications

Human immunodeficiency virus type 1 (HIV-1) clade C causes >50% of all HIV infections worldwide, and an estimated 90% of all transmissions occur mucosally with R5 strains. A pathogenic R5 simian-human immunodeficiency virus (SHIV) encoding HIV clade Cenv is highly desirable to evaluate candidate AIDS vaccines in nonhuman primates. To this end, we generated SHIV-1157i, a molecular clone from a Zambian infant isolate that carries HIV clade C env. SHIV-1157i was adapted by serial passage in five monkeys, three of which developed peripheral CD4^{4 T-cell depletion. After the first inoculated monkey developed AIDS at week 137 postinoculation, …}

Broad Specificity Of Mammalian Adenylyl Cyclase For Interaction With 2',3'-Substituted Purine- And Pyrimidine Nucleotide Inhibitors, Tung-Chung Mou, Andreas Gille, Srividya Suryanarayana, Mark Richter, Roland Seifert, Stephen R. Sprang

Biological Sciences Faculty Publications

Membrane adenylyl cyclases (mACs) play an important role in signal transduction and are therefore potential drug targets. Earlier, we identified 2',3'-O-(N-methylanthraniloyl) (MANT)-substituted purine nucleotides as a novel class of highly potent competitive mAC inhibitors (Ki values in the 10 nM range). MANT nucleotides discriminate among various mAC isoforms through differential interactions with a binding pocket localized at the interface between the C1 and C2 domains of mAC. In this study, we examine the structure/activity relationships for 2',3'-substituted nucleotides and compare the crystal structures of mAC catalytic domains (VC1:IIC2) bound to MANT-GTP, MANT-ATP, and 2',3'-(2,4,6-trinitrophenyl) (TNP)-ATP. TNP-substituted purine and pyrimidine nucleotides …

Great Bay Estuary Restoration Compendium, Jay Odell, Alyson L. Eberhardt, David M. Burdick, Pete Ingraham

PREP Reports & Publications

Single species approaches to natural resource conservation and management are now viewed as antiquated and oversimplified for dealing with complex systems. Scientists and managers who work in estuaries and other marine systems have urged adoption of ecosystem based approaches to management for nearly a decade, yet practitioners are still struggling to translate the ideas into practice. Similarly, ecological restoration projects in coastal systems have typically addressed one species or habitat. In recent years, efforts to focus on multiple species and habitats have increased. Our project developed an integrated ecosystem approach to identify multi-habitat restoration opportunities in the Great Bay estuary, …

Climate Change And Symbiotic Nitrogen Fixation In Agroecosystems, Richard B. Thomas, Skip Van Bloem, William H. Schlesinger

Publications

No abstract provided.

Lpe Center News, September 2006

Livestock and Poultry Environmental Learning Center: Newsletters

In this issue:

• October 20 Web-Cast to Discuss CAFO Regulations

• How Do I Connect to the Webcasts?

• N. Carolina project Examines Technologies for Waste Management

• Small Producers Receive Assistance Through Innovative Program.

Nebline, September 2006

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

4-H Partners With Lincoln After-School Programs
After-School Youth Participate in County Fair 4-H Activities
Free E-mail Horticulture Newsletter
Storing Vegetables and Fruit
Too Late to Spray Bagworms
Deep Watering in Fall Can Prevent Tree Death
A Clean Garden This Fall Means A Disease-Free Garden Next Spring
Take Precautions To Avoid Serious Injury When Operating ATVs
Stocking Up on MyPyramid- Style After-School Snacks
Fruit Muesli Recipe
$tretch Your Food Dollars with Beans
President’s Notes — Alice’s Analysis
Household Hints: Stain Removal Tips
Fall Maintenance
FCE News & Events
Starting the “New Year” Out Right
Chemical Control of Eastern Redcedar
Eastern Nebraska …

Behavioural Responses Of Blue Petrel Chicks (Halobaena Caerulea) To Food-Related And Novel Odours In A Simple Wind Tunnel, Gregory B. Cunningham, Richard W. Van Buskirk, Mark J. Hodges, Henri Weimerskirch, Gabrielle A. Nevitt

Biology Faculty/Staff Publications

No abstract provided.

Hexapod Herald - Vol. 18, No. 4, September 2006

Hexapod Herald and Other Entomology Department Newsletters

Contents:
Congratulations
Welcome
Farewell
Faculty News
Student News
From the Office
Grants
Publications
Travel
Meet a Distance Student
Fond Farewell
This & That
Hexapod Herald Archives

Documenting Decadal Spatial Changes In Seagrass And Acropora Palmata Cover By Aerial Photography Analysis In Vieques, Puerto Rico: 1937-2000, Luz Raquel Hernandez-Cruz, Samuel J. Purkis, Bernhard Riegl

Marine & Environmental Sciences Faculty Articles

Aerial photographs from 1937–2000 of Bahía Salina del Sur on vieques, Puerto Rico were analyzed to detect and describe spatial changes in the areal cover of sea-grass beds in Bahía Salina del Sur. The images were pre-processed to minimize noise and unsupervised classification was used to detect areas colonized by seagrass. The number of individual seagrass patches, direction, and characteristic of growth were quantified and described. Seagrass coverage increased by 85.8% over the 64-yr period and this increase was best described by a 2nd order polynomial function (r² = 0.91). Between 1937 and 2000, the spatial expression of the …

Forage News [2006-09], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Forage Field Day
• Stockpile Production: Does It Pay to Fertilize in Fall Given the High Cost of Nitrogen Fertilizer?
• Can You Successfully “Thicken-Up” Old Alfalfa Stands?
• Fall Seeding Grasses
• What a Difference a Year Makes…
• Monitor Wet Hay to Prevent Fire
• Forage Spokesman Nominations
• Rake Design Doesn’t Impact Hay Quality
• KFGC Awards Nominations
• Upcoming Events

The Evolution Of Organismal Complexity In Angiosperms As Measured By The Information Content Of Taxonomic Descriptions, J. Gordon Burleigh, Justen B. Whittall, Michael J. Sanderson

Biology

We describe an information theoretic method for measuring relative organismal complexity. The complexity measure is based on the amount of information contained in formal taxonomic descriptions of organisms. We examine the utility of this measure for quantifying the complexity of plant families. The descriptions are subjective by nature, but we find a significant correlation in the complexity values of plant families from two independently authored sets of formal taxonomic descriptions. An analysis of the evolution of complexity across angiosperms found evidence of a pattern of increasing complexity. Our measure of complexity provides an operational definition of complexity that may be …

Aerial Searches For Whooping Cranes Along The Platte River, Nebraska, John G. Sidle, Wallace G. Jobman, Craig A. Faanes

Nebraska Bird Review

The endangered Whooping Cranes (Grus americana) that migrate between Wood Buffalo National Park, Alberta and Northwest Territories, and the Aransas National Wildlife Refuge Area, Texas, roost at many aquatic stopover locations (Austin and Richert 2001) including the central Platte River, Nebraska (Johnson 1982; Lingle et al. 1984, 1986, 1991; Faanes et al. 1992; Richert 1999). Under the U.S. Endangered Species Act, 90 km of the central Platte have been designated as critical habitat for the Whooping Crane, although suitable Platte River habitat for Whooping Crane and Sandhill Crane (Grus canadensis) continues to decline (Sidle et al. …

Letter Of Information' Excerpts

Nebraska Bird Review

In the early years of the Nebraska Ornithologists' Union, which was founded in 1899, the organization published its Proceedings, yearly through 1902 and less frequently for the following 13 years. Beginning in 1916, the NOU allied itself with the Wilson Ornithological Club, and its annual proceedings were published by that organization for the next nine years. In 1925, distribution of a mimeographed "Letter of Information" began, with NOU Secretary-Treasurer Myron H. Swenk acting as editor. These Letters, which contain announcements, accounts of meetings and field trips, and notes on bird sightings from members, were published through 1932. They bridged …

Summer Field Report, June-July 2006, W. Ross Silcock

Nebraska Bird Review

Under "Old Business", numbers of Black-capped Chickadees are beginning to recover, but several observers mentioned that American Crows and, most recently, Black-billed Magpies are still suffering lowered numbers. On the plus side, Scissor-tailed Flycatchers continue in increasing numbers, including a pair (or at least one of a pair) that returned to the same location where they nested successfully last year and succeeded again this year.

And now ''New Business". Evidence came to hand that both Western and Clark's Grebes may have suffered poor breeding success due to poor water conditions at traditional breeding sites. An intriguing observation on 28 Jul …

The Nebraska Bird Review Whole Issue September 2006

Nebraska Bird Review

Table of Contents

Summer Field Report, June - July 2006 by W. Ross Silcock................... 78

Aerial Searches for Whooping Cranes along the Platte River, Nebraska
by John G. Sidle, Wallace G. Jobman, Craig A. Faanes ................... 95

White-cheeked Geese in Nebraska by W. Ross Silcock................... 99

Correction to Paul Johnsgard's "Recent Changes in Winter Bird
Numbers at Lincoln, Nebraska" (Vol. 74 No. 1) ................... 105

Excerpts from the NOU's "Letters of Information"................... 106

Subscription and Organization Information ................... 107

Evaluating Genetic Viability Of Pronghorn In Wind Cave National Park, Jonathan A. Jenks, Christopher N. Jacques, Jaret D. Sievers, Robert W. Klaver, R. Terry Bowyer, Daniel E. Roddy

The Prairie Naturalist

The pronghorn (Antilocapra americana) was reintroduced into Wind Cave National Park, South Dakota, in 1914 and thus, has inhabited the Park for almost a century. A decline in the population has raised concern for the continued existence of pronghorn inside Wind Cave National Park. Historically, pronghorn numbers reached greater than 300 individuals in the 1960's but declined to about 30 individuals by 2002. The primary objective of our study was to evaluate genetic characteristics of pronghorn to determine if reduced heterozygosity contributed to the decline of pronghorn in Wind Cave National Park. Microsatellite DNA was collected from 75 …

Habitat Characteristics Of Spring Blackbird Roosts In East-Central South Dakota, H. Jeffrey Homan, Richard S. Sawin, George M. Linz, William J. Bleier

The Prairie Naturalist

In the northern Great Plains, blackbirds (Icteridae) roost almost exclusively in emergent-dominated wetlands. The physical characteristics of wetland roosts are not well understood. From March 20 to April 20, 1999, we studied 16 wetlands used as blackbird roosts in east-central South Dakota. Six wetlands had major roosts (range: 102,000-298,000 blackbirds); whereas, 10 wetlands had minor roosts (range: 2,010-34,000 blackbirds). Maximum roost size was correlated directly with emergent vegetation area (P = 0.05) and possibly with wetland basin area (P ≤ 0.10). Water depths were greater at used sites within wetlands of major roosts (median = 44 cm) than …

The Asian Mango Flower Beetle, Protaetia Fusca (Herbst), And Euphoria Sepulcralis (Fabricius) In Florida And The West Indies (Coleoptera: Scarabaeidae: Cetoniinae), Robert E. Woodruff

Insecta Mundi

The mango flower beetle, Protaetia fusca (Herbst), an Asiatic pest of several commercial crops, was first found in Florida in 1985. All subsequent Florida specimens are recorded here, as well as the first documented records from the Bahamas and Barbados. Illustrations are provided and comparisons are made to the similar native Euphoria sepulcralis (Fabricius), which is also recorded for the first time from the Bahamas. Extensive host records and a bibliography (especially tracking P. fusca spread in Hawaii) are included.

A New Genus And Species Of Epiphloeinae From Brazil (Coleoptera: Cleridae), William E. Barr

Insecta Mundi

A new genus and species of Cleridae, Opitzius thoracicus, from Brazil is described and illustrated. Its unique features and variability are indicated.

Classification, Natural History, And Evolution Of The Epiphloeinae (Coleoptera: Cleridae). Part Iii. The Genera Parvochaetus, N. Gen., Amboakis, N. Gen., And Ellipotoma Spinola, Weston Opitz

Insecta Mundi

Abstract:
The checkered beetle genera Parvochaetus, n. gen. and Amboakis, n. gen. are described and the genus Ellipotoma Spinola is reviewed. Four new species plus P. linearis (Gorham), which represents a new combination, comprise Parvochaetus: P. albicornis, P. froeschneri, P. fucolatus, and P. sandaracus. Amboakis, a replacement name for the junior homonym Teutonia Opitz, involves four previously described species and 20 new species. The new species are A. anapsis, A. atra, A. barinas, A. binotonis, A. cauca, A.charis, A. epiomidia, A. erythrohapsis, A. funebris, A. incondita, A.katatonis, A. linitis, A.mica, A. micula, A. prolata, A. rudis, A. taruma, …

Discolomopsis Dominicana, A New Genus And Species Of Endomychidae (Coleoptera) From Dominican Amber, Floyd W. Shockley

Insecta Mundi

Discolomopsis, a new genus of Endomychidae (Coleoptera: Cucujoidea), is described and illustrated based on a fossil endomychid embedded in amber resin from the Dominican Republic. Discolomopsis dominicana sp. nov. is designated as the type species for the genus.

The Prairie Naturalist, Volume 38, Number 3, September 2006, Elmer J. Finck, Hilary Gillock

The Prairie Naturalist

The Prairie Naturalist (September 2006) 38(3)

Editor: Elmer J. Finck

Assistant editor: Hilary Gillock

Great Plains Natural Science Society

Artificial Burrows and the Deer Mouse: Do Number of Entrances Influence Use? GLENNIS A. KAUFMAN1 and DONALD W. KAUFMAN, pages 145-154

Evaluating Genetic Viability of Pronghorn in Wind Cave National Park JONATHAN A. JENKSi , CHRISTOPHER N. JACQUES, JARET D. SIEVERS, ROBERT W. KLAVER, R. TERRY BOWYER, and DANIEL E. RODDY, pages 155-165

Age Structure and Reproductive Activity of the Blue Sucker in the Milk River, Missouri River Drainage, Montana JULIE BEDNARSKl1 and DENNIS L. SCARNECCHIA, pages 167-182

Habitat Characteristics of …

Age Structure And Reproductive Activity Of The Blue Sucker In The Milk River, Missouri River Drainage, Montana, Julie Bednarski, Dennis L. Scarnecchia

The Prairie Naturalist

The life history and ecology of the blue sucker (Cycleptus elongatus) in the lower Milk River, Montana were investigated in 2002 and 2003. A total of 253 blue sucker was captured; 248 adult fish, three larval fish, and two age-0 juveniles. The ages (n = 102) of the adult blue sucker ranged from 10 to 37 years; maximum age greatly exceeded ages reported in other studies. Blue sucker in the Milk River population grew slower, matured later, and lived longer than fish at lower latitudes. Adult females of the blue sucker were longer and weighed more than …

Evaluation Of New Grace Time-Variable Gravity Data Over The Ocean, Don P. Chambers

Marine Science Faculty Publications

Monthly GRACE gravity field models from the three science processing centers (CSR, GFZ, and JPL) are analyzed for the period from February 2003 to April 2005 over the ocean. The data are used to estimate maps of the mass component of sea level at smoothing radii of 500 km and 750 km. In addition to using new gravity field models, a filter has been applied to estimate and remove systematic errors in the coefficients that cause erroneous patterns in the maps of equivalent water level. The filter is described and its effects are discussed. The GRACE maps have been evaluated …

Gene Expression In The Mouse Placenta: Developmental And Stress Responses, Ciprian P. Gheorghe

Loma Linda University Electronic Theses, Dissertations & Projects

Successful placental development is crucial for optimal growth, maturation, and survival of the embryo/fetus. Placental failure and placental pathology contributes to both morbidity and mortality of the fetus. We sought to understand normal placental development and also placental responses to stress using oligonucleotide microarray technology. To examine genetic aspects of normal placental development, we investigated gene expression patterns in the murine placenta at embryonic day 10.5 (E10.5), E12.5, E15.5, and E17.5. Hypoxia has been identified as a major stressor in placental and fetal development. In order to comprehend more completely hypoxic stress responses we sought to measure gene expression changes …

Rana Ocellata Linnaeus, 1758 (Currently Leptodactylus Ocellatus; Amphibia, Anura): Proposed Conservation Of Usage Of The Specific Name By The Designation Of A Neotype, W. Ronald Heyer, Ulisses Caramaschi, Rafael O. De Sá

Biology Faculty Publications

The purpose of this application, under Article 75.6 of the Code, is to conserve the usage of the specific name of Rana ocellata Linnaeus, 1758 for a species of leptodactylid frog from South America by the designation of a neotype. Prevailing usage of the name is threatened by the identity of the type specimen which is a different species than that which is currently known as Leptodactylus ocellatus. It is proposed that all name-bearing types be set aside and a neotype designated in accord with prevailing usage.