Life Sciences Commons^™

Wayne E. Sabbe Arkansas Soil Fertility Studies 2022, Nathan A. Slaton, Mike Daniels

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Bringing Back Former Vegans And Vegetarians: An Obstacle Analysis, Jo Anderson, Coni Arévalo

Diet

People have a variety of motivations for switching to plant-based diets, yet not all people who begin the transition to a vegan or vegetarian (collectively called veg*n) diet maintain it long-term. In fact, Faunalytics’ study of current and former veg*ns (2014) found that the number of lapsed (former) vegans and vegetarians in the United States far surpasses the number of current veg*ns, and most who lapse do so within a year. Are these people the low-hanging fruit for diet advocates? They could be—there are many of them and they’re clearly at least somewhat willing to go veg*n, so maybe more …

Population Structure And Hybridisation In A Population Of Hawaiian Feral Chickens, Maria Luisa Martin Cerezo, Saioa Lopez, Lucy Van Dorp, Garrett Hellenthal, Martin Johnsson, Eben Gering, Rie Henriksen, Dominic Wright

Biology Faculty Articles

Chickens are believed to have inhabited the Hawaiian island of Kauai since the first human migrations around 1200AD, but numbers have peaked since the tropical storms Iniki and Iwa in the 1980s and 1990s that destroyed almost all the chicken coops on the island and released large numbers of domestic chickens into the wild. Previous studies have shown these now feral chickens are an admixed population between Red Junglefowl (RJF) and domestic chickens. Here, using genetic haplotypic data, we estimate the time of the admixture event between the feral population on the island and the RJF to 1981 (1976–1995), coinciding …

Analysis Of 3.5 Million Sars-Cov-2 Sequences Reveals Unique Mutational Trends With Consistent Nucleotide And Codon Frequencies, Sarah E. Fumagalli, Nigam H. Padhiar, Douglas Meyer, Upendra Katneni, Haim Bar, Michael Dicuccio, Anton A. Komar, Chava Kimchi‑Sarfaty

Biological, Geological, and Environmental Faculty Publications

Background: Since the onset of the SARS-CoV-2 pandemic, bioinformatic analyses have been performed to understand the nucleotide and synonymous codon usage features and mutational patterns of the virus. However, comparatively few have attempted to perform such analyses on a considerably large cohort of viral genomes while organizing the plethora of available sequence data for a month-by-month analysis to observe changes over time. Here, we aimed to perform sequence composition and mutation analysis of SARS-CoV-2, separating sequences by gene, clade, and timepoints, and contrast the mutational profile of SARS-CoV-2 to other comparable RNA viruses.Methods: Using a cleaned, filtered, and pre-aligned dataset …

Smart Precision Agriculture But Resource Constrained Farmers: Is Service Provision A Potential Solution? Farmer's Willingness To Pay For Laser-Land Leveling Services In Nepal, Gokul P. Paudel, Aditya Raj Khanal, Dil Bahadur Rahut, Timothy J. Krupnik, Andrew J. Mcdonald

Agricultural and Environmental Sciences Faculty Research

Farmers commonly split large, undulating crop fields, even those at similar elevation range or contour, into a patchwork of small sub-plots in plane areas of Nepal. Specifically, to ensure irrigation or rainwater throughout their cultivated rice or wheat growing areas, structures like bunds, dikes, and ditches are commonly built. These structures not only require significant labor hours to build but also incur loss of some portion of productive crop areas. Laser-land leveling (LLL) is one of the precision technologies that can prevent these area losses, save labor costs, and enhance water utilization. However, purchase of LLL system requires …

Trophically Integrated Ecometric Models As Tools For Demonstrating Spatial And Temporal Functional Changes In Mammal Communities, Rachel A. Short, Jenny L. Mcguire, P. David Polly, A. Michelle Lawing

Natural Resource Management Faculty Publications

We are in a modern biodiversity crisis that will restructure community compositions and ecological functions globally. Large mammals, important contributors to ecosystem function, have been affected directly by purposeful extermination and indirectly by climate and land-use changes, yet functional turnover is rarely assessed on a global scale using metrics based on functional traits. Using ecometrics, the study of functional trait distributions and functional turnover, we examine the relationship between vegetation cover and locomotor traits for artiodactyl and carnivoran communities. We show that the ability to detect a functional relationship is strengthened when locomotor traits of both primary consumers (artiodactyls, n …

Diverse Secondary Metabolites Are Expressed In Particle-Associated And Free-Living Microorganisms Of The Permanently Anoxic Cariaco Basin, David Gellar-Mcgrath, Paraskevi Mara, Gordon T. Taylor, Elizabeth A. Suter, Virginia Edgcomb, Maria Pachiadaki

Faculty Works: Biology, Chemistry, and Environmental Studies

Secondary metabolites play essential roles in ecological interactions and nutrient acquisition, and are of interest for their potential uses in medicine and biotechnology. Genome mining for biosynthetic gene clusters (BGCs) can be used for the discovery of new compounds. Here, we use metagenomics and metatranscriptomics to analyze BGCs in free-living and particle-associated microbial communities through the stratified water column of the Cariaco Basin, Venezuela. We recovered 565 bacterial and archaeal metagenome-assembled genomes (MAGs) and identified 1154 diverse BGCs. We show that differences in water redox potential and microbial lifestyle (particle-associated vs. free-living) are associated with variations in the predicted composition …

Potential Repercussions Of Offshore Wind Energy Development In The Northeast United States For The Atlantic Surfclam Survey And Population Assessment, Sarah Borsetti, Daphne M. Munroe, Andrew M. Scheld, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

Faculty Publications

The Atlantic surfclam Spisula solidissima fishery, which spans the U.S. Northeast continental shelf, is among the most exposed to offshore wind energy development impacts because of the overlap of fishing grounds with wind energy lease areas, the hydraulic dredges used by the fishing vessels, and the location of vessel home ports relative to the fishing grounds. The Atlantic surfclam federal assessment survey is conducted using a commercial fishing vessel in locations that overlap with the offshore wind energy development. Once wind energy turbines, cables, and scour protection are installed, survey operations within wind energy lease areas may be curtailed or …

Landings, Vol. 31, No. 2, Maine Lobstermen’S Community Alliance, Patrice Mccarron, Patrick Keliher, Fiona Hogan, Melissa Waterman, Kevin Kelley

Landings: News & Views from Maine's Lobstering Community

Landings content emphasizes science, history, resource sustainability, economic development, and human interest stories related to Maine's lobster industry. The newsletter emphasizes lobstering as a traditional, majority-European American lifeway with an economic and social heritage unique to the coast of Maine. The publication focuses how ongoing research to engage in sustainable, non-harmful, and non-wasteful commercial fishing practices benefit both the fishery and Maine's coastal legacy.

For more information, please visit the Maine Lobstermen’s Community Alliance (MLCA) website.

Editorial: Green Chemistry Biocatalysis, Barry J. Ryan, Gary T. Henehan, Bekir E. Eser, Ning Li, Zheng Guo, Gemma K. Kinsella

Articles

Editorial on the Research Topic: Green chemistry biocatalysis

Optimal Stomatal Theory Predicts Co2 Responses Of Stomatal Conductance In Both Gymnosperm And Angiosperm Trees, Anna Gardner, Mingkai Jiang, David S. Ellsworth, A. Robert Mackenzie, Jeremy Pritchard, Martin Karl Friedrich Bader, Craig V.M. Barton, Carl Bernacchi, Carlo Calfapietra, Kristine Y. Crous, Mirindi Eric Dusenge, Teresa E. Gimeno, Marianne Hall, Shubhangi Lamba, Sebastian Leuzinger, Johan Uddling, Jeffrey Warren, Göran Wallin, Belinda E. Medlyn

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Optimal stomatal theory predicts that stomata operate to maximise photosynthesis (Anet) and minimise transpirational water loss to achieve optimal intrinsic water-use efficiency (iWUE). We tested whether this theory can predict stomatal responses to elevated atmospheric CO2 (eCO2), and whether it can capture differences in responsiveness among woody plant functional types (PFTs). We conducted a meta-analysis of tree studies of the effect of eCO2 on iWUE and its components Anet and stomatal conductance (gs). We compared three PFTs, using the unified stomatal optimisation (USO) model to account for confounding effects of leaf–air vapour pressure difference (D). We expected smaller gs, but …

Blanding’S Turtle (Emydoidea Blandingii): Species Conservation Assessment, Melissa J. Panella, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Blanding’s turtle (Emydoidea blandingii) as a Tier 1 at-risk species. Some general management recommendations are made here regarding Blanding’s turtles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk turtle that will aid in the decision-making …

Access And Use Of Consortium For E-Resources In Agriculture (Cera) By The Research Scholars And Post Graduate Students Of The Krc College Of Horticulture, Arabhavi, Uhs Bagalkot, Manjunath B. Hadimani Mr., Vinayaka M. Bankapur Dr.

Library Philosophy and Practice (e-journal)

In the electronic information age, consortiums are gaining more importance. The consortia movement has entered libraries and has received attention from the information-producing community. CeRA consortium is a tremendously great effort on the part of the Indian Council of Agricultural Research (ICAR) to propose single-window access to e-resources to State Agricultural Universities (SAU)/ICAR institutes all over India. CeRA subscribed to e-Resources and create/facilitate an e-environment and e-access culture for faculty, scientists, research scholars, and students in the National Agricultural Research and Education System. The current study attempts to understand the access and use of CeRA among the researchers and PG …

2023 Nebraska Crop Production Budgets Higher Costs And Risks, Glennis Mcmclure

Cornhusker Economics

The Nebraska crop budgets are available for the 2023 production season. The 84 budgets indicate cost of production increases. Estimated average economic or total costs per bushel for 2023 corn production are expected to be at least 23% to 25% greater than last year. Soybeans are estimated to be 13% to 19% more in economic costs per bushel, with wheat production costs having jumped over 20% compared to last year and running as high as 63% higher over the last two years combined. Cost scenarios for individual producers can vary based on their timing of input purchases and price variabilities.

Temporal Variability Of Microbial Response To Crude Oil Exposure In The Northern Gulf Of Mexico, Melissa L. Brock, Rachel Richardson, Melissa Ederington-Hagy, Lisa Nigro, Richard A. Snyder, Wade H. Jeffrey

VIMS Articles

Oil spills are common occurrences in the United States and can result in extensive ecological damage. The 2010 Deepwater Horizon oil spill in the Gulf of Mexico was the largest accidental spill recorded. Many studies were performed in deep water habitats to understand the microbial response to the released crude oil. However, much less is known about how planktonic coastal communities respond to oil spills and whether that response might vary over the course of the year. Understanding this temporal variability would lend additional insight into how coastal Florida habitats may have responded to the Deepwater Horizon oil spill. To …

Concerted Phenotypic Flexibility Of Avian Erythrocyte Size And Number In Response To Dietary Anthocyanin Supplementation, Maciej Dzialo, Amadeusz Bryla, Kristen J. Demoranville, Katherine M. Carbeck, Olivia Fatica, Lisa Trost, Barbara J. Pierce, Edyta T. Sadowska, Scott R. Mcwilliams, Ulf Bauchinger

Biology Faculty Publications

Background: Endurance flight impose substantial oxidative costs on the avian oxygen delivery system. In particular, the accumulation of irreversible damage in red blood cells can reduce the capacity of blood to transport oxygen and limit aerobic performance. Many songbirds consume large amounts of anthocyanin-rich fruit, which is hypothesized to reduce oxidative costs, enhance post-flight regeneration, and enable greater aerobic capacity. While their antioxidant benefits appear most straightforward, the effects of anthocyanins on blood composition remain so far unknown. We fed thirty hand-raised European starlings (Sturnus vulgaris) two semisynthetic diets (with or without anthocyanin supplement) and manipulated the extent of flight …

Cover Crop Planting Practices Determine Their Performance In The U.S. Corn Belt, Katja Koehler-Cole, Roger W. Elmore, Humberto Blanco-Canqui, Charles A. Francis, Charles A. Shapiro, Christopher A. Proctor, Sabrina J. Ruis, Suat Irmak, Derek M. Heeren

Nebraska Extension: Faculty and Staff Publications

Cover crop growing periods in the western United States Corn Belt could be extended by planting earlier. We evaluated both pre-harvest broadcast interseeding and post-harvest drilling of the following cover crops: (a) cereal rye (Secale cereale L.) [RYE]; (b) a mix of rye + legumes + brassicas [MIX1], (c) a mix of rye + oat [Avena sativa L.] + legumes + brassicas (MIX2), (d) legumes [LEGU]) and (e) a no cover crop control. These were tested in continuous corn (Zea mays L.) [corn–corn] and soybean [Glycine max (L.) Merr.]–corn systems [soybean–corn] at three sites in Nebraska …

Free-Living Allen’S Hummingbirds (Selasphorus Sasin) Rarely Use Torpor While Nesting, Erich R. Eberts, Glenn J. Tattersall, Peter J. Auger, Maria Curley, Melissa I. Morado, Eric G. Strauss, Don Powers, Noemi C. Soveral, Bret W. Tobalske, Anusha Shankar

Faculty Publications - Department of Biological & Molecular Science

For reproducing animals, maintaining energy balance despite thermoregulatory challenges is important for surviving and successfully raising offspring. This is especially apparent in small endotherms that exhibit high mass-specific metabolic rates and live in unpredictable environments. Many of these animals use torpor, substantially reducing their metabolic rate and often body temperature to cope with high energetic demands during non-foraging periods. In birds, when the incubating parent uses torpor, the lowered temperatures that thermally sensitive offspring experience could delay development or increase mortality risk. We used thermal imaging to noninvasively explore how nesting female hummingbirds sustain their own energy balance while effectively …

The Facet Of Human Impact: Solenopsis Invicta Buren, 1972 Spreading Around The Atlantic Forest, Manuela O. Ramalho, Victor H. Nagatani, Juliana M. C. Alves, Otavio G. M. Silva, Eduardo G. P. Fox, Rodrigo F. Souza, Debora Y. Kayano, Ricardo Harakava, Alexandre W. S. Hilsdorf, Maria S. C. Morini

Biology Faculty Publications

The present investigation deals with some aspects of the diversity of fire ants (Hymenoptera: Formicidae) in their native range. The Red Imported Fire Ant Solenopsis invicta is native to the tropical and subtropical inland territories of South America. In Brazil, it mainly occurs around the Pantanal region and across the Paraguay river, a region composed of grasslands which are seasonally flooded. Recent studies have evidenced this fire ant species is gradually spreading to other regions of Brazil. In the present investigation, we surveyed the molecular diversity of S. invicta populations across fragments of Atlantic Forest in Sao Paulo, Brazil, using …

Long‑Term Adaptation To Galactose As A Sole Carbon Source Selects For Mutations Outside The Canonical Gal Pathway, Artemiza A. Martínez, Andrew Conboy, Sean Buskirk, Daniel A. Marad, Gregory I. Lang

Biology Faculty Publications

Galactose is a secondary fermentable sugar that requires specific regulatory and structural genes for its assimilation, which are under catabolite repression by glucose. When glucose is absent, the catabolic repression is attenuated, and the structural GAL genes are fully activated. In Saccharomyces cerevisiae, the GAL pathway is under selection in environments where galactose is present. However, it is unclear the adaptive strategies in response to long-term propagation in galactose as a sole carbon source in laboratory evolution experiments. Here, we performed a 4,000-generation evolution experiment using 48 diploid Saccharomyces cerevisiae populations to study adaptation in galactose. We show that fitness …

An Evaluation Of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology, Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti

USDA Wildlife Services: Staff Publications

As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid sequencing to aid in appropriate response and mitigation activities. To facilitate this objective, we investigate a next-generation sequencing platform that uses a portable nanopore sequencing device to generate and present data in real time. This platform offers the potential to extend in-house sequencing …

Physical Activity And Exercise For Hot Flashes: Trigger Or Treatment?, Sarah Witkowski, Rose Evard, Jacquelyn J. Rickson, Quinn White, Lynnette Leidy Sievert

Exercise and Sport Studies: Faculty Publications

Importance and Objective: Hot flashes (HFs) are a prevalent feature of menopause. Hot flashes can be bothersome and affect quality of life. However, HFs have also been associated with the risk for cardiovascular disease. Therefore, providing current evidence on the effect of therapies to reduce HFs can help patients and providers with decision making. This review provides details on the scientific evidence to date related to the effect of physical activity (PA) and exercise to alter the HF experience in women

Methods: The PubMed database was searched between June 2020 and June 2022 for currently available evidence regarding the relation …

Metagenomic Analysis Of The Outdoor Dust Microbiomes: A Case Study From Abu Dhabi, Uae, Lina Maloukh, Yousef Nazzal, Alagappan Kumarappan, Fares Howari, Lakshmi Kesari Ambika, Rihab Yahmadi, Manish Sharma, Jibran Iqbal, Ahmed A. Al-Taani, Imen Ben Salem, Cijo M. Xavier, Muhamad Naseem

All Works

Outdoor dust covers a shattered range of microbial agents from land over transportation, human microbial flora, which includes pathogen and commensals, and airborne from the environment. Dust aerosols are rich in bacterial communities that have a major impact on human health and living environments. In this study, outdoor samples from roadside barricades, safety walls, and fences (18 samples) were collected from Abu Dhabi, UAE and bacterial diversity was assessed through a 16S rRNA amplicon next generation sequencing approach. Clean data from HiSeq produced 1,099,892 total reads pairs for 18 samples. For all samples, taxonomic classifications were assigned to the OTUs …

Sustainable And Organic Beekeeping In Chester County, John Pisciotta

Sustainability Research & Practice Seminar Presentations

Professor John Pisciotta, Biology - Sustainable and Organic Beekeeping in Chester County

Refining The Moose Serum Progesterone Threshold To Diagnose Pregnancy, Madeline Struck, William J. Severud, Yvette M. Chenaux-Ibrahim, Edmund J. Isaac, Janine L. Brown, Seth A. Moore, Tiffany M. Wolf

Natural Resource Management Faculty Publications

Pregnancy determination is necessary for sound wildlife management and understanding population dynamics. Pregnancy rates are sensitive to environmental and physiological factors and may indicate the overall trajectory of a population. Pregnancy can be assessed through direct methods (rectal palpation, sonography) or indicated using hormonal assays (serum progesterone or pregnancy-specific protein B, fecal progestogen metabolites). A commonly used threshold of 2 ng/ml of progesterone in serum has been used by moose biologists to indicate pregnancy but has not been rigorously investigated. To refine this threshold, we examined the relationship between progesterone concentrations in serum samples and pregnancy in 87 moose ( …

Childhood Trauma And Brain Structure In Children And Adolescents, Matthew Peverill, Maya L. Rosen, Lucy A. Lurie, Kelly A. Sambrook, Margaret A. Sheridan, Katie A. Mclaughlin

Neuroscience: Faculty Publications

The dimensional model of adversity proposes that experiences of threat and deprivation have distinct neurodevelopmental consequences. We examined these dimensions, separately and jointly, with brain structure in a sample of 149 youth aged 8–17—half recruited based on exposure to threat-related experiences. We predicted that greater threat would be uniquely associated with reduced cortical thickness and surface area in brain regions associated with salience processing including ventromedial prefrontal cortex (vmPFC), anterior cingulate cortex (ACC), and insula, and that deprivation experiences would be uniquely associated with reductions in cortical thickness and surface area in frontoparietal areas associated with cognitive control. As predicted, …

A Systematic Review Of Snake Translocations To Identify Potential Tactics For Reducing Postrelease Effects, Jonathan D. Choquette, Jacqueline D. Litzgus, Joanne X.Y. Gui, Trevor E. Pitcher

Integrative Biology Publications

Advancements in the field of reintroduction biology are needed, but understanding of how to effectively conduct translocations, particularly with snakes, is lacking. We conducted a systematic review of snake translocation studies to identify potential tactics for reducing postrelease effects. We included studies on intentional, human-mediated, wild–wild, or captive–wild translocations to any location, regardless of motive or number of snakes translocated. Only studies that presented results for at least 1 of 4 outcomes (movement behavior, site fidelity, survival, or population establishment) were included. We systematically searched 4 databases for published studies and used 5 methods to search the gray literature. Our …

Genomic Underpinnings Of Population Persistence In Isle Royale Moose, Christopher C. Kyriazis, Annabel C. Beichman, Kristin Brzeski, Sarah Hoy, Rolf O. Peterson, John A. Vucetich, Leah Vucetich, Kirk E. Lohmueller, Robert K. Wayne

Michigan Tech Publications

Island ecosystems provide natural laboratories to assess the impacts of isolation on population persistence. However, most studies of persistence have focused on a single species, without comparisons to other organisms they interact with in the ecosystem. The case study of moose and gray wolves on Isle Royale allows for a direct contrast of genetic variation in isolated populations that have experienced dramatically differing population trajectories over the past decade. Whereas the Isle Royale wolf population recently declined nearly to extinction due to severe inbreeding depression, the moose population has thrived and continues to persist, despite having low genetic diversity and …

Forest Ecosystem Properties Emerge From Interactions Of Structure And Disturbance, J. Christina Mitchell, Daniel M. Kashian, Xiongwen Chen, Stella Cousins, David J. Flaspohler, Daniel S. Gruner, Jeremy S. Johnson, Thilina D. Surasinghe, Jenny Zambrano, Brian Buma

Michigan Tech Publications

Forest structural diversity and its spatiotemporal variability are constrained by environmental and biological factors, including species pools, climate, land-use history, and legacies of disturbance regimes. These factors influence forest responses to disturbances and their interactions with structural diversity, potentially creating structurally mediated emergent properties at local to continental spatial scales and over evolutionary time. Here, we present a conceptual framework for exploring the emergent properties that arise from interactions between forest structural diversity and disturbances. We synthesize and present definitions for key terms, including emergent property, disturbance, and resilience, and highlight various types and examples of emergent properties, such as …

Properties And Emissions Of Three-Layer Particleboards Manufactured With Mixtures Of Wood Chips And Partially Liquefied Bark, Wen Jiang, Stergios Adamopoulos, Reza Hosseinpourpia, Thomas Walther, Sergej Medved

Michigan Tech Publications

Partial liquefaction of residual biomass shows good potential for developing new materials suitable for making bio-based composites. Three-layer particleboards were produced by replacing virgin wood particles with partially liquefied bark (PLB) in the core or surface layers. PLB was prepared by the acid-catalyzed liquefaction of industrial bark residues in polyhydric alcohol. The chemical and microscopic structure of bark and residues after liquefaction were evaluated by means of Fourier Transform Infrared Spectroscopy (FTIR) and Scanning Electron Microscopy (SEM), while the particleboards were tested for their mechanical and water-related properties, as well as their emission profiles. Through a partial liquefaction process, some …