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Full-Text Articles in Life Sciences

Why Should Early-Career Scientists Publish In Society Journals, Stephen K. Dolan, Lori D. Banks, Wenqi Yu Jan 2024

Why Should Early-Career Scientists Publish In Society Journals, Stephen K. Dolan, Lori D. Banks, Wenqi Yu

Molecular Biosciences Faculty Publications

In this editorial, written by early-career scientists, we advocate for the invaluable role of society journals in our scientific community. By choosing to support these journals as authors, peer reviewers, and as editors, we can reinforce our academic growth and benefit from their re-investment back into the scientific ecosystem. Considering the numerous clear merits of this system for future generations of microbiologists and more broadly, society, we argue that early-career researchers should publish our high-quality research in society journals to shape the future of science and scientific publishing landscape.


The Inaugural Mbio Junior Editorial Board—Lessons Learned And The Path Forward Toward Improving The Peer Review Process, Cynthia Ayefoumi Adinortey, Stephen K. Dolan, Sarah Doore, Rebeccah Lijek, Diana Priscila Pires, Wenqi Yu, Elizabeth B. Draganova, Lennart Schada Von Borzyskowski Jan 2024

The Inaugural Mbio Junior Editorial Board—Lessons Learned And The Path Forward Toward Improving The Peer Review Process, Cynthia Ayefoumi Adinortey, Stephen K. Dolan, Sarah Doore, Rebeccah Lijek, Diana Priscila Pires, Wenqi Yu, Elizabeth B. Draganova, Lennart Schada Von Borzyskowski

Molecular Biosciences Faculty Publications

The inaugural Junior Editorial Board (JEB) of mBio consisted of 64 early-career researchers active from 2022 to 2023. The goal of the JEB was to train early-career researchers in the art of peer review under the guidance of experienced editors. JEB members gained hands-on experience in peer review by participating in modules detailing the publishing process through the lenses of the journal, editor, and reviewer. Ultimately, JEB members applied this new knowledge by reviewing mBio manuscripts. Here, we summarize the background, the mission, and the achievements of the first mBio JEB. We also include possible trajectories for the future editions …


Dcaf14 Regulates Cdt2 To Promote Set8-Dependent Replication Fork Protection, Neysha Tirado-Class, Caitlin Hathaway, Anthony Nelligan, Huzefa Dungrawala Jan 2023

Dcaf14 Regulates Cdt2 To Promote Set8-Dependent Replication Fork Protection, Neysha Tirado-Class, Caitlin Hathaway, Anthony Nelligan, Huzefa Dungrawala

Molecular Biosciences Faculty Publications

DDB1- and CUL4-associated factors (DCAFs) CDT2 and DCAF14 are substrate receptors for Cullin4–RING E3 ubiquitin ligase (CRL4) complexes. CDT2 is responsible for PCNA-coupled proteolysis of substrates CDT1, p21, and SET8 during S-phase of cell cycle. DCAF14 functions at stalled replication forks to promote genome stability, but the mechanism is unknown. We find that DCAF14 mediates replication fork protection by regulating CRL4CDT2 activity. Absence of DCAF14 causes increased proteasomal degradation of CDT2 substrates. When forks are challenged with replication stress, increased CDT2 function causes stalled fork collapse and impairs fork recovery in DCAF14-deficient conditions. We further show that stalled fork protection …


Microalgal Cultivation Characteristics Using Commercially Available Air-Cushion Packaging Material As A Photobioreactor, Clifford R. Merz, Neha Arora, Michael Welch, Enlin Lo, George P. Philippidis Jan 2023

Microalgal Cultivation Characteristics Using Commercially Available Air-Cushion Packaging Material As A Photobioreactor, Clifford R. Merz, Neha Arora, Michael Welch, Enlin Lo, George P. Philippidis

Marine Science Faculty Publications

Air-cushion (AC) packaging has become widely used worldwide. ACs are air-filled, dual plastic packaging solutions commonly found surrounding and protecting items of value within shipping enclosures during transit. Herein, we report on a laboratory assessment employing ACs as a microalgal photobioreactor (PBR). Such a PBR inherently addresses many of the operational issues typically encountered with open raceway ponds and closed photobioreactors, such as evaporative water loss, external contamination, and predation. Using half-filled ACs, the performance of microalgal species Chlorella vulgaris, Nannochloropsis oculata, and Cyclotella cryptica (diatom) was examined and the ash-free dry cell weight and overall biomass productivity determined …


Otud5 Limits Replication Fork Instability By Organizing Chromatin Remodelers, Angelo De Vivo, Hongseon Song, Yujin Lee, Neysha Tirado-Class, Anthony Sanchez, Sandy D. Westerheide, Huzefa Dungrawala, Younghoon Kee Jan 2023

Otud5 Limits Replication Fork Instability By Organizing Chromatin Remodelers, Angelo De Vivo, Hongseon Song, Yujin Lee, Neysha Tirado-Class, Anthony Sanchez, Sandy D. Westerheide, Huzefa Dungrawala, Younghoon Kee

Molecular Biosciences Faculty Publications

Proper regulation of replication fork progression is important for genomic maintenance. Subverting the transcription-induced conflicts is crucial in preserving the integrity of replication forks. Various chromatin remodelers, such as histone chaperone and histone deacetylases are known to modulate replication stress, but how these factors are organized or collaborate are not well understood. Here we found a new role of the OTUD5 deubiquitinase in limiting replication stress. We found that OTUD5 is recruited to replication forks, and its depletion causes replication fork stress. Through its C-terminal disordered tail, OTUD5 assembles a complex containing FACT, HDAC1 and HDAC2 at replication forks. A …


The Identification Of Two M20b Family Peptidases Required For Full Virulence In Staphylococcus Aureus, Nathanial James Torres, Devon Rizzo, Maria A. Reinberg, Mary-Elizabeth Jobson, Brendan C. Totzke, Jessica K. Jackson, Wenqi Yu, Lindsey Neil Shaw Jan 2023

The Identification Of Two M20b Family Peptidases Required For Full Virulence In Staphylococcus Aureus, Nathanial James Torres, Devon Rizzo, Maria A. Reinberg, Mary-Elizabeth Jobson, Brendan C. Totzke, Jessica K. Jackson, Wenqi Yu, Lindsey Neil Shaw

Molecular Biosciences Faculty Publications

We have previously demonstrated that deletion of an intracellular leucine aminopeptidase results in attenuated virulence of S. aureus. Herein we explore the role of 10 other aminopeptidases in S. aureus pathogenesis. Using a human blood survival assay we identified mutations in two enzymes from the M20B family (PepT1 and PepT2) as having markedly decreased survival compared to the parent. We further reveal that pepT1, pepT2 and pepT1/2 mutant strains are impaired in their ability to resist phagocytosis by, and engender survival within, human macrophages. Using a co-infection model of murine sepsis, we demonstrate impairment of dissemination and survival …


Unique Thermal Sensitivity Imposes A Cold-Water Energetic Barrier For Vertical Migrators, Brad Seibel, Matthew A. Birk Oct 2022

Unique Thermal Sensitivity Imposes A Cold-Water Energetic Barrier For Vertical Migrators, Brad Seibel, Matthew A. Birk

Marine Science Faculty Publications

Alterations of marine species’ ranges with climate change are often attributed to oxygen limitation in warming oceans. Here we report unique metabolic temperature sensitivities for the myriad of vertically migrating oceanic species that daily cross depth-related gradients in temperature and oxygen. In these taxa, selection favours high metabolic activity for predator–prey interactions in warm shallow water and hypoxia tolerance in the cold at depth. These diverging selective pressures result in thermal insensitivity of oxygen supply capacity and enhanced thermal sensitivity of active metabolic rate. Aerobic scope is diminished in the cold, well beyond thermodynamic influences and regardless of ambient oxygen …


Initial Estuarine Response To Inorganic Nutrient Inputs From A Legacy Mining Facility Adjacent To Tampa Bay, Florida, Marcus W. Beck, Andrew Altieri, Christine Angelini, Maya C. Burke, Jing Chen, Diana W. Chin, Jayne Gardiner, Chuanmin Hu, Katherine A. Hubbard, Yonggang Liu, Cary Lopez, Miles Medina, Elise Morrison, Edward J. Phlips, Gary E. Raulerson, Sheila Scolaro, Edward T. Sherwood, David Tomasko, Robert H. Weisberg, Joseph Whalen May 2022

Initial Estuarine Response To Inorganic Nutrient Inputs From A Legacy Mining Facility Adjacent To Tampa Bay, Florida, Marcus W. Beck, Andrew Altieri, Christine Angelini, Maya C. Burke, Jing Chen, Diana W. Chin, Jayne Gardiner, Chuanmin Hu, Katherine A. Hubbard, Yonggang Liu, Cary Lopez, Miles Medina, Elise Morrison, Edward J. Phlips, Gary E. Raulerson, Sheila Scolaro, Edward T. Sherwood, David Tomasko, Robert H. Weisberg, Joseph Whalen

Marine Science Faculty Publications

Legacy mining facilities pose significant risks to aquatic resources. From March 30th to April 9th, 2021, 814 million liters of phosphate mining wastewater and marine dredge water from the Piney Point facility were released into lower Tampa Bay (Florida, USA). This resulted in an estimated addition of 186 metric tons of total nitrogen, exceeding typical annual external nitrogen load estimates to lower Tampa Bay in a matter of days. An initial phytoplankton bloom (non-harmful diatoms) was first observed in April. Filamentous cyanobacteria blooms (Dapis spp.) peaked in June, followed by a bloom of the red tide organism Karenia brevis …


Navigating Grad School: A Professional Development Workbook For Incoming Marine Science Graduate Students, Mya Breitbart, Kristen N. Buck Jan 2022

Navigating Grad School: A Professional Development Workbook For Incoming Marine Science Graduate Students, Mya Breitbart, Kristen N. Buck

Marine Science Faculty Publications

Graduate school is a formative time in the life of a budding scientist – getting a chance to deeply explore and master a scientific field while creating new knowledge – it doesn’t get much better than that! Yet, the transition to graduate school can be difficult to navigate for even the most successful undergraduate students. During undergraduate studies, students learn by following a highly structured curriculum with clear expectations and goals, often measured through exams and grades. Thus, learners are dependent on a teacher for guidance, acquisition of content, and evaluation. In contrast, graduate students must embrace self-motivated learning as …


Freshwater Macrophytes Harbor Viruses Representing All Five Major Phyla Of The Rna Viral Kingdom Orthornavirae, Karyna Rosario, Noémi Van Bogaert, Natalia B. López-Figueroa, Haris Paliogiannis, Mason Kerr, Mya Breitbart Jan 2022

Freshwater Macrophytes Harbor Viruses Representing All Five Major Phyla Of The Rna Viral Kingdom Orthornavirae, Karyna Rosario, Noémi Van Bogaert, Natalia B. López-Figueroa, Haris Paliogiannis, Mason Kerr, Mya Breitbart

Marine Science Faculty Publications

Research on aquatic plant viruses is lagging behind that of their terrestrial counterparts. To address this knowledge gap, here we identified viruses associated with freshwater macrophytes, a taxonomically diverse group of aquatic phototrophs that are visible with the naked eye. We surveyed pooled macrophyte samples collected at four spring sites in Florida, USA through next generation sequencing of RNA extracted from purified viral particles. Sequencing efforts resulted in the detection of 156 freshwater macrophyte associated (FMA) viral contigs, 37 of which approximate complete genomes or segments. FMA viral contigs represent putative members from all five major phyla of the RNA …


The Open-Ocean Gulf Of Mexico After Deepwater Horizon: Synthesis Of A Decade Of Research, Tracey T. Sutton, Rosanna J. Milligan, Kendra Daly, Kevin M. Boswell, April B. Cook, Maëlle Cornic, Tamara Frank, Kaitlin Frasier, Daniel Hahn, Frank Hernandez, John Hildebrand, Chuanmin Hu, Matthew W. Johnston, Samantha B. Joye, Heather Judkins, Jon A. Moore, Steven A. Murawski, Nina M. Pruzinsky, John A. Quinlan, Andrew Remsen, Kelly L. Robinson, Isabel C. Romero, Jay R. Rooker, Michael Vecchione, R. J. Wells Jan 2022

The Open-Ocean Gulf Of Mexico After Deepwater Horizon: Synthesis Of A Decade Of Research, Tracey T. Sutton, Rosanna J. Milligan, Kendra Daly, Kevin M. Boswell, April B. Cook, Maëlle Cornic, Tamara Frank, Kaitlin Frasier, Daniel Hahn, Frank Hernandez, John Hildebrand, Chuanmin Hu, Matthew W. Johnston, Samantha B. Joye, Heather Judkins, Jon A. Moore, Steven A. Murawski, Nina M. Pruzinsky, John A. Quinlan, Andrew Remsen, Kelly L. Robinson, Isabel C. Romero, Jay R. Rooker, Michael Vecchione, R. J. Wells

Marine Science Faculty Publications

The scale of the Deepwater Horizon disaster was and is unprecedented: geographic extent, pollutant amount, countermeasure scope, and of most relevance to this Research Topic issue, range of ecotypes affected. These ecotypes include coastal/nearshore, continental shelf, deep benthic, and open-ocean domains, the last of which is the subject of this synthesis. The open-ocean ecotype comprises ~90% of the volume of the Gulf of Mexico. The exact percentage of this ecotype contaminated with toxins is unknown due to its three-dimensional nature and dynamics, but estimates suggest that the footprint encompassed most of its eastern half. Further, interactions between the water column …


Land Reversion And Zoonotic Spillover Risk, John E. Vinson, Nicole L. Gottdenker, Luis Fernando Chaves, Rajreni B. Kaul, Andrew M. Kramer, John M. Drake, Richard J. Hall Jan 2022

Land Reversion And Zoonotic Spillover Risk, John E. Vinson, Nicole L. Gottdenker, Luis Fernando Chaves, Rajreni B. Kaul, Andrew M. Kramer, John M. Drake, Richard J. Hall

Integrative Biology Faculty and Staff Publications

Deforestation alters wildlife communities and modifies human–wildlife interactions, often increasing zoonotic spillover potential. When deforested land reverts to forest, species composition differences between primary and regenerating (secondary) forest could alter spillover risk trajectory. We develop a mathematical model of land-use change, where habitats differ in their relative spillover risk, to understand how land reversion influences spillover risk. We apply this framework to scenarios where spillover risk is higher in deforested land than mature forest, reflecting higher relative abundance of highly competent species and/or increased human–wildlife encounters, and where regenerating forest has either very low or high spillover risk. We find …


The Magnitude, Diversity, And Distribution Of The Economic Costs Of Invasive Terrestrial Invertebrates Worldwide, David Renault, Elena Angulo, Ross N. Cuthbert, Phillip J. Haubrock, César Capinha, Alok Bang, Andrew M. Kramer, Franck Courchamp Jan 2022

The Magnitude, Diversity, And Distribution Of The Economic Costs Of Invasive Terrestrial Invertebrates Worldwide, David Renault, Elena Angulo, Ross N. Cuthbert, Phillip J. Haubrock, César Capinha, Alok Bang, Andrew M. Kramer, Franck Courchamp

Integrative Biology Faculty and Staff Publications

Invasive alien species (IAS) are a major driver of global biodiversity loss, hampering conservation efforts and disrupting ecosystem functions and services. While accumulating evidence documented ecological impacts of IAS across major geographic regions, habitat types and taxonomic groups, appraisals for economic costs remained relatively sparse. This has hindered effective cost-benefit analyses that inform expenditure on management interventions to prevent, control, and eradicate IAS. Terrestrial invertebrates are a particularly pervasive and damaging group of invaders, with many species compromising primary economic sectors such as forestry, agriculture and health. The present study provides synthesised quantifications of economic costs caused by invasive terrestrial …


Biological Invasion Costs Reveal Insufficient Proactive Management Worldwide, Ross N. Cuthbert, Christophe Diagne, Emma J. Hudgins, Anna Turbelin, Danish A. Ahmed, Céline Albert, Thomas W. Bodey, Elizabeta Briski, Franz Essl, Phillip J. Haubrock, Rodolphe E. Gozlan, Natalia Kirichenko, Melina Kourantidou, Andrew M. Kramer, Franck Courchamp Jan 2022

Biological Invasion Costs Reveal Insufficient Proactive Management Worldwide, Ross N. Cuthbert, Christophe Diagne, Emma J. Hudgins, Anna Turbelin, Danish A. Ahmed, Céline Albert, Thomas W. Bodey, Elizabeta Briski, Franz Essl, Phillip J. Haubrock, Rodolphe E. Gozlan, Natalia Kirichenko, Melina Kourantidou, Andrew M. Kramer, Franck Courchamp

Integrative Biology Faculty and Staff Publications

The global increase in biological invasions is placing growing pressure on the management of ecological and economic systems. However, the effectiveness of current management expenditure is difficult to assess due to a lack of standardised measurement across spatial, taxonomic and temporal scales. Furthermore, there is no quantification of the spending difference between pre-invasion (e.g. prevention) and post-invasion (e.g. control) stages, although preventative measures are considered to be the most cost-effective. Here, we use a comprehensive database of invasive alien species economic costs (InvaCost) to synthesise and model the global management costs of biological invasions, in order to provide a better …


Knowledge Gaps In Economic Costs Of Invasive Alien Fish Worldwide, Phillip J. Haubrock, Camille Bernery, Ross N. Cuthbert, Chunlong Liu, Melina Kourantidou, Boris Leroy, Anna J. Turbelin, Andrew M. Kramer, Laura N.H. Verbrugge, Christophe Diagne, Franck Courchamp, Rodolphe E. Gozlan Jan 2022

Knowledge Gaps In Economic Costs Of Invasive Alien Fish Worldwide, Phillip J. Haubrock, Camille Bernery, Ross N. Cuthbert, Chunlong Liu, Melina Kourantidou, Boris Leroy, Anna J. Turbelin, Andrew M. Kramer, Laura N.H. Verbrugge, Christophe Diagne, Franck Courchamp, Rodolphe E. Gozlan

Integrative Biology Faculty and Staff Publications

Invasive alien fishes have had pernicious ecological and economic impacts on both aquatic ecosystems and human societies. However, a comprehensive and collective assessment of their monetary costs is still lacking. In this study, we collected and reviewed reported data on the economic impacts of invasive alien fishes using InvaCost, the most comprehensive global database of invasion costs. We analysed how total (i.e. both observed and potential/predicted) and observed (i.e. empirically incurred only) costs of fish invasions are distributed geographically and temporally and assessed which socioeconomic sectors are most affected. Fish invasions have potentially caused the economic loss of at least …


Economic Costs Of Biological Invasions In The United States, Jean E. Fantle-Lepczyk, Phillip J. Haubrock, Andrew M. Kramer, Ross N. Cuthbert, Anna J. Turbelin, Robert Crystal-Ornelas, Christophe Diagne, Franck Courchamp Jan 2022

Economic Costs Of Biological Invasions In The United States, Jean E. Fantle-Lepczyk, Phillip J. Haubrock, Andrew M. Kramer, Ross N. Cuthbert, Anna J. Turbelin, Robert Crystal-Ornelas, Christophe Diagne, Franck Courchamp

Integrative Biology Faculty and Staff Publications

The United States has thousands of invasive species, representing a sizable, but unknown burden to the national economy. Given the potential economic repercussions of invasive species, quantifying these costs is of paramount importance both for national economies and invasion management. Here, we used a novel global database of invasion costs (InvaCost) to quantify the overall costs of invasive species in the United States across spatiotemporal, taxonomic, and socioeconomic scales. From 1960 to 2020, reported invasion costs totaled $4.52 trillion (USD 2017). Considering only observed, highly reliable costs, this total cost reached $1.22 trillion with an average annual cost of …


Analysing Economic Costs Of Invasive Alien Species With The Invacost R Package, Boris Leroy, Andrew M. Kramer, Anne-Charlotte Vaissière, Melina Kourantidou, Franck Courchamp, Christophe Diagne Jan 2022

Analysing Economic Costs Of Invasive Alien Species With The Invacost R Package, Boris Leroy, Andrew M. Kramer, Anne-Charlotte Vaissière, Melina Kourantidou, Franck Courchamp, Christophe Diagne

Integrative Biology Faculty and Staff Publications

  1. The reported costs of invasive alien species from the global database InvaCost are heterogeneous and cover different spatio-temporal scales. A standard procedure for aggregating invasive species cost estimates is necessary to ensure the repeatability and comparativeness of studies.
  2. We introduce here the invacost r package, an open-source software designed to query and analyse the InvaCost database. We illustrate this package and its framework with cost data associated with invasive alien invertebrates.
  3. First, the invacost package provides updates of this dynamic database directly in the analytical environment R. Second, it helps understand the heterogeneous nature of monetary cost data for invasive …


Analysing Economic Costs Of Invasive Alien Species With The Invacost R Package, Boris Leroy, Andrew M. Kramer, Anne-Charlotte Vaissière, Melina Kourantidou, Franck Courchamp, Christophe Diagne Jan 2022

Analysing Economic Costs Of Invasive Alien Species With The Invacost R Package, Boris Leroy, Andrew M. Kramer, Anne-Charlotte Vaissière, Melina Kourantidou, Franck Courchamp, Christophe Diagne

Integrative Biology Faculty and Staff Publications

  1. The reported costs of invasive alien species from the global database InvaCost are heterogenous and cover different spatio-temporal scales. A standard procedure for aggregating invasive species cost estimates is necessary to ensure the repeatability and comparativeness of studies.

  2. We introduce here the invacost R package, an open-source software designed to query and analyse the InvaCost database. We illustrate this package and its framework with cost data associated with invasive alien invertebrates.

  3. First, the invacost package provides updates of this dynamic database directly in the analytical environment R. Second, it helps understand the heteregoneous nature of monetary cost data for invasive …


Re-Assessing The Influence Of Particle-Hosted Sulphide Precipitation On The Marine Cadmium Cycle, Gregory F. De Souza, Derek Vance, Matthias Sieber, Tim M. Conway, Susan H. Little Jan 2022

Re-Assessing The Influence Of Particle-Hosted Sulphide Precipitation On The Marine Cadmium Cycle, Gregory F. De Souza, Derek Vance, Matthias Sieber, Tim M. Conway, Susan H. Little

Marine Science Faculty Publications

It has been inferred that the marine distributions of the micronutrient cadmium (Cd) and its stable isotope composition (expressed as δ114Cd) bear widespread and unambiguous evidence for loss of Cd from the shallow water column through the formation of particle-associated cadmium sulphide (CdS) in oxygen minimum zones (OMZs). In this review, we bring together elemental and isotopic datasets from the dissolved and particulate Cd pools in order to unravel the multiple, overlapping controls on the distribution of Cd and δ114Cd, and demonstrate that the global dataset challenges this view. By far the most important control on …


Status, Change, And Futures Of Zooplankton In The Southern Ocean, Nadine M. Johnston, Eugene J. Murphy, Angus Atkinson, Andrew J. Constable, Cédric Cotté, Martin Cox, Kendra L. Daly, Ryan Driscoll, Hauke Flores, Svenja Halfter, Natasha Henschke, Simeon L. Hill, Juan Höfer, Brian P. Hunt, So Kawaguchi, Dhugal Lindsay, Cecilia Liszka, Valerie Loeb, Clara Manno, Bettina Meyer, Evgeny A. Pakhomov, Matthew H. Pinkerton, Christian S. Reiss, Kate Richerson, Walker O. Jr., Deborah K. Steinberg, Kerrie M. Swadling, Geraint A. Tarling, Sally E. Thorpe, Devi Veytia, Peter Ward, Christine K. Weldrick, Guang Yang Jan 2022

Status, Change, And Futures Of Zooplankton In The Southern Ocean, Nadine M. Johnston, Eugene J. Murphy, Angus Atkinson, Andrew J. Constable, Cédric Cotté, Martin Cox, Kendra L. Daly, Ryan Driscoll, Hauke Flores, Svenja Halfter, Natasha Henschke, Simeon L. Hill, Juan Höfer, Brian P. Hunt, So Kawaguchi, Dhugal Lindsay, Cecilia Liszka, Valerie Loeb, Clara Manno, Bettina Meyer, Evgeny A. Pakhomov, Matthew H. Pinkerton, Christian S. Reiss, Kate Richerson, Walker O. Jr., Deborah K. Steinberg, Kerrie M. Swadling, Geraint A. Tarling, Sally E. Thorpe, Devi Veytia, Peter Ward, Christine K. Weldrick, Guang Yang

Marine Science Faculty Publications

In the Southern Ocean, several zooplankton taxonomic groups, euphausiids, copepods, salps and pteropods, are notable because of their biomass and abundance and their roles in maintaining food webs and ecosystem structure and function, including the provision of globally important ecosystem services. These groups are consumers of microbes, primary and secondary producers, and are prey for fishes, cephalopods, seabirds, and marine mammals. In providing the link between microbes, primary production, and higher trophic levels these taxa influence energy flows, biological production and biomass, biogeochemical cycles, carbon flux and food web interactions thereby modulating the structure and functioning of ecosystems. Additionally, Antarctic …


What Is The Recorded Economic Cost Of Alien Invasive Fishes Worldwide?, Phillip J. Haubrock, Camille Bernery, Ross N. Cuthbert, Chunlong Liu, Melina Kourantidou, Boris Leroy, Anna J. Turbelin, Andrew M. Kramer, Laura Verbrugge, Christophe Diagne, Franck Courchamp, Rodolphe E. Gozlan Jan 2022

What Is The Recorded Economic Cost Of Alien Invasive Fishes Worldwide?, Phillip J. Haubrock, Camille Bernery, Ross N. Cuthbert, Chunlong Liu, Melina Kourantidou, Boris Leroy, Anna J. Turbelin, Andrew M. Kramer, Laura Verbrugge, Christophe Diagne, Franck Courchamp, Rodolphe E. Gozlan

Integrative Biology Faculty and Staff Publications

Invasive alien fishes have caused pernicious ecological impacts on aquatic ecosystems. However, there has not been a global appraisal of associated economic impacts. Here, we compiled reported economic impacts of invasive alien fishes using the most comprehensive global database of invasion costs (InvaCost). We analyze how fish invasion costs are distributed geographically and temporally, as well as which socioeconomic sectors are most impacted. Fish invasions have caused the economic loss of at least US$32.8 billion globally (2017 value), from only 26 reported species (of 128 known invasive alien fish species). North America had the highest costs (> 99%), followed by …


Phip Variants Associated With Chung–Jansen Syndrome Disrupt Replication Fork Stability And Genome Integrity, Neysha Tirado-Class, Caitlin Hathaway, Wendy K. Chung, Huzefa Dungrawala Jan 2022

Phip Variants Associated With Chung–Jansen Syndrome Disrupt Replication Fork Stability And Genome Integrity, Neysha Tirado-Class, Caitlin Hathaway, Wendy K. Chung, Huzefa Dungrawala

Molecular Biosciences Faculty Publications

Chung–Jansen syndrome (CJS) is a rare, autosomal dominant disorder characterized by developmental delay, intellectual disability/cognitive impairment, behavioral challenges, obesity, and dysmorphic features. CJS is associated with heterozygous variants in PHIP (Pleckstrin-Homology Interacting Protein), a gene that encodes one of several substrate receptors for Cullin4-RING (CRL4) E3 ubiquitin ligase complex. Full-length PHIP, also called DCAF14, was recently identified to function as a replication stress response protein. Herein, we report the identification of two PHIP missense variants identified by exome sequencing in unrelated individuals with CJS. The variants p.D488V and p.E963G occur in different functional elements of DCAF14-WD40 repeat domain and pleckstrin …


Sequence Properties Of An Intramolecular Interaction That Inhibits P53 Dna Binding, Emily Gregory, Gary W. Daughdrill Jan 2022

Sequence Properties Of An Intramolecular Interaction That Inhibits P53 Dna Binding, Emily Gregory, Gary W. Daughdrill

Molecular Biosciences Faculty Publications

An intramolecular interaction between the p53 transactivation and DNA binding domains inhibits DNA binding. To study this autoinhibition, we used a fragment of p53, referred to as ND WT, containing the N-terminal transactivation domains (TAD1 and TAD2), a proline rich region (PRR), and the DNA binding domain (DBD). We mutated acidic, nonpolar, and aromatic amino acids in TAD2 to disrupt the interaction with DBD and measured the effects on DNA binding affinity at different ionic strengths using fluorescence anisotropy. We observed a large increase in DNA binding affinity for the mutants consistent with reduced autoinhibition. The ΔΔG between DBD and …


A Machine Learning Approach To Estimate Surface Chlorophyll A Concentrations In Global Oceans From Satellite Measurements, Chuanmin Hu, Lian Feng, Qi Guan Jun 2021

A Machine Learning Approach To Estimate Surface Chlorophyll A Concentrations In Global Oceans From Satellite Measurements, Chuanmin Hu, Lian Feng, Qi Guan

Marine Science Faculty Publications

Various approaches have been proposed to estimate surface ocean chlorophyll a concentrations (Chl, mg m -3 ) from spectral reflectance measured either in the field or from space, each with its own strengths and limitations. Here, we develop a machine learning approach to reduce the impact of spectral noise and improve algorithm performance at the global scale for multiple satellite sensors. Among several candidates, the support vector regression (SVR) approach was found to yield the best algorithm performance as gauged by several statistical measures against field-measured Chl. While statistically the performance of the SVR is slightly worse than the empirical …


Constraining Southern Ocean Co2 Flux Uncertainty Using Uncrewed Surface Vehicle Observations, A. J. Sutton, Nancy L. Williams, B. Tilbrook Feb 2021

Constraining Southern Ocean Co2 Flux Uncertainty Using Uncrewed Surface Vehicle Observations, A. J. Sutton, Nancy L. Williams, B. Tilbrook

Marine Science Faculty Publications

Remote, harsh conditions of the Southern Ocean challenge our ability to observe the region’s influence on the climate system. Southern Ocean air-sea CO2 flux estimates have significant uncertainty due to the reliance on limited ship-dependent observations in combination with satellite-based and interpolated data products. We utilize a new approach, making direct measurements of air-sea CO2, wind speed, and surface ocean properties on an Uncrewed Surface Vehicle (USV). In 2019, the USV completed the first autonomous circumnavigation of Antarctica providing hourly CO2 flux estimates. Using this unique data set to constrain potential error in different measurements and propagate those through the …


Global Economic Costs Of Aquatic Invasive Alien Species, Ross N. Cuthbert, Zarah Pattison, Nigel G. Taylor, Laura Verbrugge, Christophe Diagne, Danish A. Ahmed, Boris Leroy, Elena Angulo, Elizabeta Briski, César Capinha, Jane A. Catford, Tatenda Dalu, Franz Essl, Rodolphe E. Gozlan, Phillip J. Haubrock, Melina Kourantidou, Andrew M. Kramer, David Renault, Ryan J. Wasserman, Franck Courchamp Jan 2021

Global Economic Costs Of Aquatic Invasive Alien Species, Ross N. Cuthbert, Zarah Pattison, Nigel G. Taylor, Laura Verbrugge, Christophe Diagne, Danish A. Ahmed, Boris Leroy, Elena Angulo, Elizabeta Briski, César Capinha, Jane A. Catford, Tatenda Dalu, Franz Essl, Rodolphe E. Gozlan, Phillip J. Haubrock, Melina Kourantidou, Andrew M. Kramer, David Renault, Ryan J. Wasserman, Franck Courchamp

Integrative Biology Faculty and Staff Publications

Much research effort has been invested in understanding ecological impacts of invasive alien species (IAS) across ecosystems and taxonomic groups, but empirical studies about economic effects lack synthesis. Using a comprehensive global database, we determine patterns and trends in economic costs of aquatic IAS by examining: (i) the distribution of these costs across taxa, geographic regions and cost types; (ii) the temporal dynamics of global costs; and (iii) knowledge gaps, especially compared to terrestrial IAS. Based on the costs recorded from the existing literature, the global cost of aquatic IAS conservatively summed to US$345 …


A Scopus-Based Bibliometric Study Of Maritime Research Involving The Automatic Identification System, Steven D. Meyers, Laura Azevedo, Mark E. Luther Jan 2021

A Scopus-Based Bibliometric Study Of Maritime Research Involving The Automatic Identification System, Steven D. Meyers, Laura Azevedo, Mark E. Luther

Marine Science Faculty Publications

Vessel traffic records from the Automatic Identification System (AIS) are a useful source of information for maritime data analytics, and of training data for maritime artificial intelligence systems. Researchers utilizing these data are developing the foundations for operational maritime tools essential to economic expansion and security. The global growth and distribution of this research effort from 1997 to 2019 was examined through a bibliometric study of 817 Scopus-listed publications. Indications of both collaboration and accelerating competition were found by examining the number of publications and authors, national and institutional affiliations of the authors, and number of citations received. Prior …


Impacts Of Petroleum, Petroleum Components, And Dispersants On Organisms And Populations, Steven A. Murawski, Martin Grosell, Cynthia Smith, Tracey Sutton, Kenneth M. Halanych, Richard F. Shaw, Charles A. Wilson Jan 2021

Impacts Of Petroleum, Petroleum Components, And Dispersants On Organisms And Populations, Steven A. Murawski, Martin Grosell, Cynthia Smith, Tracey Sutton, Kenneth M. Halanych, Richard F. Shaw, Charles A. Wilson

Marine Science Faculty Publications

Following the Deepwater Horizon blowout, oil, degraded oil, oil mixed with dispersants, and management responses to the spill affected a variety of Gulf of Mexico organisms. This review provides examples of various documented impacts, common patterns, and trends across organisms and/or their environments, and discusses future implications as well as directions for future research. Organism effects are generally characterized as lethal and sublethal. Sublethal can be short term, long term, or permanent and multigenerational. We present individual examples of effects on behavioral response, olfaction, vision, cardiac function, and gene shift, based on research done in laboratories, mesocosm settings, and the …


Effects Of Petroleum By-Products And Dispersants On Ecosystems, Kenneth M. Halanych, Cameron H. Ainsworth, Erik E. Cordes, Richard E. Dodge, Markus Huettel, Irving A. Mendelssohn, Steven A. Murawski, Claire B. Paris-Limouzy, Patrick T. Schwing, Richard F. Shaw, Tracey Sutton Jan 2021

Effects Of Petroleum By-Products And Dispersants On Ecosystems, Kenneth M. Halanych, Cameron H. Ainsworth, Erik E. Cordes, Richard E. Dodge, Markus Huettel, Irving A. Mendelssohn, Steven A. Murawski, Claire B. Paris-Limouzy, Patrick T. Schwing, Richard F. Shaw, Tracey Sutton

Marine Science Faculty Publications

Gulf of Mexico ecosystems are interconnected by numerous physical and biological processes. As a result of the Deepwater Horizon (DWH) spill, some normal ecological processes including resource connectivity and trophic interactions and were damaged or broken. A considerable portion of post-DWH research has focused on higher levels of biological organization (i.e., populations, communities, and ecosystems) spanning at least four environments (onshore, coastal, open ocean, and deep benthos). Damage wrought by the oil spill and mitigation efforts varied considerably across ecosystems. Whereas all systems show prolonged impacts because of cascading effects that impacted functional connections within and between communities, deep-sea and …


The 79°N Glacier Cavity Modulates Subglacial Iron Export To The Ne Greenland Shelf, Stephan Krisch, Mark James Hopwood, Janin Schaffer, Ali Al-Hashem, Juan Höfer, Rutgers Van Der Loeff, Tim M. Conway, Brent A. Summers, Pablo Lodeiro, Indah Ardiningsih, Tim Steffens, Eric Pieter Achterberg Jan 2021

The 79°N Glacier Cavity Modulates Subglacial Iron Export To The Ne Greenland Shelf, Stephan Krisch, Mark James Hopwood, Janin Schaffer, Ali Al-Hashem, Juan Höfer, Rutgers Van Der Loeff, Tim M. Conway, Brent A. Summers, Pablo Lodeiro, Indah Ardiningsih, Tim Steffens, Eric Pieter Achterberg

Marine Science Faculty Publications

Approximately half of the freshwater discharged from the Greenland and Antarctic Ice Sheets enters the ocean subsurface as a result of basal ice melt, or runoff draining via the grounding line of a deep ice shelf or marine-terminating glacier. Around Antarctica and parts of northern Greenland, this freshwater then experiences prolonged residence times in large cavities beneath floating ice tongues. Due to the inaccessibility of these cavities, it is unclear how they moderate the freshwater associated supply of nutrients such as iron (Fe) to the ocean. Here, we show that subglacial dissolved Fe export from Nioghalvfjerdsbrae (the ‘79°N Glacier’) is …