Life Sciences Commons^™

Characterization Of A Plant Gene Family Expanded In Glycine Max, Lisa Snoderly-Foster

Masters Theses

"Glycine max, commonly named the cultivated soybean, is one of the oldest and most important food crops in the world. The study of the G. max genome provides valuable insight into the molecular mechanisms that govern its reproduction and environmental responsiveness, key factors in maximizing crop yield. Since the complete sequencing of the genome in 2010, the analysis has become faster and easier, especially with the development of numerous web-based, publically accessible bioinformatics tools.

This research effort utilizes these tools to characterize a small, unannotated G. max gene family. Although no definitive evidence was uncovered for the production of a …

Dephosphorylation Of Iqg1 By Cdc14 Temporally Regulates Actin Ring Formation, Daniel Patrick Miller

Masters Theses

"Cytokinesis is the final step in cell division when the cell separates the cytoplasm by contracting a ring composed of filamentous actin (F-actin) and type II myosin. Iqg1, an IQGAP family member, is an essential scaffolding protein in budding yeast (S. cerevisiae) required for actin recruitment to, and contraction of, the actomyosin ring. Actin is recruited by the calponin homology domain (CHD) in anaphase after Iqg1 is localized to the bud neck. Consensus sites for the cyclin-dependent kinase (CDK) Cdc28 were identified flanking the CHD. This led us to the hypothesis that phosphorylation of Iqg1 by Cdc28 negatively regulates actin …

Assessment Of Range, Habitat Use, And Diel Movement Of Flathead Catfish (Pylodictis Olivaris) In The Wabash River Using Ultrasonic Telemetry, Sarah Mary Huck

Masters Theses

Flathead Catfish (Pylodictis olivaris) are one of the most targeted species for recreational and commercial fishing within the Mississippi River Basin. With heavy harvest pressure placed on many populations, proper management is crucial; however, the species range, habitat requirements, and diel movement patterns have rarely been investigated in free flowing rivers. Therefore, I used ultrasonic telemetry with active tracking to monitor movement and habitat use of 44 Flathead Catfish from August 2012 to December 2013 in the lower 280 km of the Wabash River. This system is ideal to evaluate broad and fine scale movement of Flathead Catfish …

Morphological And Ecological Investigations Of Species Of Bulrush (Scirpus) In Illinois, Julian G. Moore

Masters Theses

Two closely related species of bulrush, Scirpus atrovirens (Green bulrush) and Scirpus georgianus (Georgia bulrush), are widely distributed in Illinois. They are difficult to separate in the field, but readily distinguishable under magnification in the lab. These two species have been found in moist meadows, shallow marshes, edges of wet forests, and ditches. The objective of this study was to evaluate the morphological and ecological distinctness of the species with the aim toward discovering and describing other features to distinguish them reliably. Eighty plants of Scirpus atrovirens and 80 of Scirpus georgianus were examined. Fifty S. atrovirens and 50 S. …

Comparison Of Muscular Strength And Hypertrophy In High Repetition Training Versus Low Repetition Training For The Bench Press Exercise, Tyler Mink

Masters Theses

No abstract provided.

The Role Of Landmarks In Territory Maintenance By The Black Saddlebags Dragonfly, Tramea Lacerata, Jeffrey Lojewski

Masters Theses

Territoriality can reduce competition for resources, but territorial defense can be costly. Therefore any behavior that reduces territorial costs may increase the net benefit of territoriality. Some species will align their territory boundaries with conspicuous landmarks that may serve to reduce defense costs. Dragonflies, including black saddlebags (Tramea lacerata), defend territories at breeding sites, keeping rival males away to allow themselves access to females. We used three treatments to investigate whether T. lacerata used landmarks: constraining landmarks (an object that provided a physical barrier to flight), non-constraining landmarks (an object of the same dimensions and construction that did …

Effects Of Instream Habitat Restoration On Macroinvertebrate And Fish Communities In A Small Midwestern Stream, Manisha Pant

Masters Theses

Although millions of dollars are spent annually on stream habitat restoration, the biological responses to these restorations are rarely monitored. I assessed the impact of habitat enhancement on fish and macroinvertebrate abundance and diversity in a small Midwestern stream. Fish and macroinvertebrate communities were sampled annually in two restored and two unrestored sites beginning two years before and continuing four years after restoration. Habitat heterogeneity increased in the restored sites following the restoration, but there were no significant changes in most macroinvertebrate and fish community indices. Macroinvertebrate composition was significantly different between spring and fall, but in general, assemblages within …

Native Plant Establishment Success Influenced By Centaurea Stoebe Control Method, Laurelin Marie Martin

Masters Theses

Invasive species frequently hinder restoration efforts. While the effectiveness of differing control methods are often reported, the impacts these methods have on the establishment of a native plant community are often unknown. To determine methods that effectively reduce spotted knapweed (Centaurea stoebe) while enhancing native species establishment, we tested 12 treatment combinations consisting of an initial site preparation (mowing, mowing + clopyralid, or mowing + glyphosate), with combinations of annual adult knapweed hand pulling, and/or burning. We established 48 plots and applied site preparation treatments during summer 2008, seeded 23 native forbs and grasses during spring 2009, pulled …

Climate Change And Metapopulation Implications For Species Re/Introductions: A Spatial Analysis Of Suitable Habitat For The American Marten (Martes Americana) In Northern Michigan, Joshua Michael Green

Masters Theses

The American marten (Martes americana), which was extirpated from Michigan by 1939 due to logging and trapping, has cultural significance as a clan animal to Great Lakes Native American Tribes and ecological significance as a forest health indicator. Sleeping Bear Dunes National Lakeshore (SBD) is considering reintroduction, but several factors must first be considered in assessing the habitat suitability. The goals of this study were to 1) enhance an existing habitat suitability model by including additional relevant variables, 2) conduct a spatial analysis of the habitat within the study area using a metapopulation perspective and 3) incorporate climate …

Identification Of Actin Cytoskeletal Protein Interactions With The Fission Yeast Scaffold, Mid1, Marian Testori

Masters Theses

Cancer is a disease of uncontrolled cell division. Cell division in eukaryotic cells occurs by the formation of a contractile ring, predominantly composed of filamentous actin (F-actin). During mitosis, actin filaments polymerize to form rings at the medial plane of the cell that constrict causing the cell membrane to pinch and divide. Proteins that regulate this process are essential because dysregulation can lead to uninhibited cell growth and division. In fission yeast, the protein Mid1 functions as a scaffold to recruit regulatory proteins required for actin filament formation and simultaneously anchors the contractile ring at the cell division site. The …

The Effects Of A Moisture-Wicking Fabric Shirt On The Physiological Responses During Acute Exercise In The Heat, Kimberly Wigboldy

Masters Theses

The purpose of this study is to investigate the effects that a form fitted, moisture-wicking fabric shirt, promoted to have improved evaporative and ventilation properties, has on the thermoregulatory, physiological and perceptual response during moderate intensity exercise in the heat for an extended duration of exercise of 90 minutes. Ten healthy subjects (7 males, 3 females), completed two heat stress tests consisting of 20 minute seated rest in a neutral environment (24°C, 60% RH), 30 minute seated rest in a hot environment (33°C, 60% RH), and 90 minutes of exercise(50% V0_{2 peak}) on a magnetically-braked cycle ergometerin a …

Expression Of The Chemokine Receptor, Cxcr4, And Its Ligand, Sdf-1, Are Increased In Purkinje Cells Of The Multiple System Atrophy Cerebellum, Megan Welter

Masters Theses

Multiple System Atrophy (MSA) is a sporadic, neurodegenerative disease that consists of three conditions: autonomic dysfunction, Parkinsonism and cerebellar ataxia. Our lab conducted an Affymetrix global gene expression analysis using pons tissue of MSA patients to determine genes that are differentially expressed when compared to non- MSA controls. This study identified upregulated genes, including the C-X-C chemokine receptor type 4, CXCR4, to which stromal cell-derived factor-I (SDF-1) is the natural ligand. The CXCR4/SDF-1 signaling pair has been sho.wn to play multiple roles in the brain, such as inducing neuronal apoptosis and promoting leukocyte recruitment during inflammation. The MSA cerebellum presents …

Use Of A Specific Alpha7 Nicotinic Acetylcholine Receptor Agonist Can Prevent Loss Of Retinal Ganglion Cells In An In Vivo Rat Glaucoma Model, David Mata

Masters Theses

Acetylcholine (ACh) has been shown to have a neuroprotective effect against glutamate-induced excitotoxicity in cultured retinal ganglion cells (RGCs) through activation of α7 nicotinic ACh receptors (nAChRs). In this study, the neuroprotective effects of the α7 nAChR agonist, PNU-282987, were investigated using an in vivo model of glaucoma in adult Long Evans rats. Hypertonic saline injections were used to induce a glaucoma model. After one month, retinas were removed, flat mounted, fixed and labeled with an antibody against Thy 1.1 to label RGCs and fluorescently tagged for visualization. Eye drop application of PNU-282987 resulted in neuroprotection against RGC loss in …

Functional Annotation, Transcriptional Characterization And Enzymatic Contributions Of Essential Amino Acid Biosynthesis-Related Genes, Teresa J. Clark

Masters Theses

In plants, essential amino acid biosynthesis predominantly or exclusively occurs in the plastid. The plastid in the heterokont alga Nannochloropsis oceanica is surrounded by four membranes, which add great complexity to intracellular trafficking and communication. N. oceanica genes in essential amino acid biosynthesis were functionally annotated. The biosynthesis pathways resemble the pathways in Arabidopsis thaliana, but the gene content seems to be simpler in N. oceanica.

In addition, two A. thaliana mutants with loss-of-function mutations in the aspartate kinase-homoserine dehydrogenase 2 (AK-HSDH2) gene were characterized. These ak-hsdh2 mutants demonstrate unexpected accumulation of aspartate-derived amino acids (ADAAs), particularly threonine, in …

Data Storage Alternatives For A Gridded Crop Disease Risk Forecasting System, Paul J. Roehsner

Masters Theses

Three separate storage technologies able to serve gridded data were selected for comparison of performance in terms of providing speed and expandability to a crop disease forecasting system. The three storage technologies chosen were PostgreSQL (a relational database management system), MongoDB (NoSQL system), and netCDF files. Speed tests were performed for each by running two different crop disease risk forecasting models requiring data of different spatiotemporal resolutions. Multiple trials were done using different storage hardware. Systems were then qualitatively compared for expandability by noting the process involved in adding successive crop disease forecasting models.

It was found that due to …

Removing The Classical Landmark: Assessing An Epistemology Governed By Methodological Naturalism, Kegan Shaw

Masters Theses

This paper proposes to assess the naturalist project in epistemology with an eye towards exposing the project as deficient for serving as a robust epistemological project. Epistemologists treasure a certain family of questions and burden themselves with a number of specific concerns the most important of which, I think, cannot be answered by the epistemological naturalist. Ignoring these questions, I will argue, essentially amounts to a dismissal of the principle tension that primarily motivates and properly guides epistemological theorizing. This tension is the familiar appearance vs. reality distinction and characterizes what I am calling the classical landmark or boundary-stone for …

Isolation Of A Dosage Dependent Suppressor Using Saccharomyces Cerevisiae As A Model System, Rachel Chimner

Masters Theses

Human pathogenic Yersinia use a type three secretion system to deliver various effector proteins into host cells. Once these effector proteins are within the cell, they elicit a cascade of events that disrupt the normal immune response. One of these effectors, YopT, is known to disrupt actin distribution but it is currently unknown what YopT targets within the host cell. To investigate the cellular targets of the YopT effector, we use a yeast model system and a dosage-dependent suppression screen. The dosage-dependent suppression screen isolated three plasmids able to suppress YopT induced lethality within yeast. One of them, 2T9, was …

The Effect Of Accurate Categorical Activity Selection On The Prediction Of Percent Body Fat When Using The Omron Hbf-306 Bioelectric Impedance Analyzer, Abby Moulton

Masters Theses

Accurate methods for assessing body composition are important in evaluating health risk and fitness levels in individuals. Bioelectric Impedance Analysis has become a popular field method for assessing body composition because it is inexpensive, noninvasive, and easy to administer. The purpose of this study was to compare the activity level settings (Normal vs. Athlete) on the Omron HBF-306 bioelectrical impedance device to the criterion method, air displacement plethysmography, to evaluate the accuracy of the settings for college age females. It was hypothesized that the "Normal" setting would be more accurate for individuals described as normal by FIT index scores and …

Resolving The Nutritional Requirements Of The Bile Acid-Dehydroxylating Gut Bacterium Clostridium Scindens, Oindrila Paul

Masters Theses

Compared to the other parts of the human body, the gastrointestinal tract harbors a complex microbiota. The impact of the indigenous microbiota on host physiology is most pronounced in the colon, where the primary bile acids chenodeoxycholic acid and cholic acid are converted, via 7α-dehydroxylation, to the toxic secondary bile acids lithocholic acid and deoxycholic acid, respectively, by Clostridium scindens, an obligate anaerobe. Interestingly, other than bile acid dehydroxylation, little is known about the basic physiology of C. scindens. Understanding the metabolism of C. scindens will hopefully provide much-needed information as to how this gut bacterium impacts human health and …

Parasites Of Invasive Carp And Native Fish In The Wabash River, Justin Wilcox

Masters Theses

Although the majority of introduced non-native species fail to establish, proliferate and spread to the point of causing observable damage, there are a significant minority that achieve biological successes far beyond what they do in their native ranges. Parasites and pathogens are theorized to play an important role in determining the outcome of invasions by non-native species, both as potential mediators of the population growth of invasive species and as invasive species themselves. This study examines and compares the abundance and species richness of digestive tract helminths in native and non-native fish of the lower Wabash River, a single waterpool …

Dietary Ecology Of An Actively-Foraging Snake Species: Coluber Constrictor Foxii, Corissa Pauline Lennon

Masters Theses

The trophic niche width of a species varies depending on the foraging strategy employed by the individuals within a population. Among reptiles, the niche breadth of many species of snakes is relatively understudied. Within this clade, the genus Coluber includes wide-ranging, actively foraging snakes that have been historically labeled as dietary generalists. The dietary information on Blue Racers (Coluber constrictor foxii) is limited, and little is known about ontogenetic or seasonal differences in the prey species consumed. Additionally, this information is available from gut and fecal content only. In addition to obtaining gut and fecal contents, I employed stable isotope …

Morphometric Study Of Variation In The Genus Galeopsis (Lamiaceae), Michael T. Hughes

Masters Theses

The genus Galeopsis L. of the family Lamiaceae, also known as hemp-nettle, grows naturally in Europe and Asia, with four species naturalized in North America. The number of real species is in doubt, because of conflict over whether certain taxa are species, subspecies, or synonyms. The genus consists of five to eight taxa. I studied flower and leaf size ratios to clarify the distinctions of taxa in Galeopsis. These data were analyzed statistically, using cluster analysis, Principal Components Analysis (PCA), and Analysis of Variance (ANOVA). The results indicated that although some measurements, such as leaf width in G. angustifolia, …

Short-Term Responses Of Fish Assemblages To Habitat Restoration In A Small Midwestern Stream, John Leon West

Masters Theses

Recent efforts to restore stream habitat have become a common practice, yet evaluations of biotic responses to these practices are not as common. I evaluated fish assemblage response to restoration in a reach of Kickapoo Creek, a fourth order stream southwest of Charleston, Illinois. Restoration included 446 meters of bank stabilization, pool scouring keys, and the creation of two artificial riffles. To have a representation of pre-restoration fish assemblages, I sampled four stream reaches of Kickapoo Creek twice before construction of habitat restoration: two control reaches (upstream and downstream) and two restored reaches within a 0.5 km restoration stretch (upstream …

Wetting And Drying Cycles And The Fungal Communities On Leaf Litter In Streams, Kele Qwinn Thrailkill

Masters Theses

"Leaf litter is a major source of energy for streams in deciduous forests. Fungi play a critical role by converting the leaves into nutritional material for the rest of the food web. The breakdown of leaf litter and associated biota, including invertebrates and fungi, have been proposed as measures of stream health in systems affected by anthropogenic activity. Rates of leaf breakdown can be depressed in streams affected by acidity, metals, organic contaminants, and other stressors. Climate change may lead to alterations in stream hydrology such that streams experience more frequent floods as well as drying episodes. Fungal communities can …

Freeze Tolerance Conferred By Transgenic Expression Of Late Embryogenesis Abundant Protein In Insect Cells, Alyssa N. Walser

Masters Theses

Anhydrobiotic organisms such as the brine shrimp Artemia franciscana have developed strategies to survive and thrive under conditions of limited water availability. One strategy is the accumulation of late embryo genesis abundant (LEA) proteins. Cells of Drosophila melanogaster (Kc167), which had previously been genetically modified to express a group 1 LEA protein (LEA1.3) found in A. franciscana, were used to test the impact of water stress due to freezing to -80°C. Two different freezing devices were used to determine the impact of the freezing protocol on the viability of cells after freezing and thawing. The first method used a 12-well …

Relationship Between Fundamental Movement Skills And Body Mass Index In Rural Elementary Age Children, Mariah L. Bolin

Masters Theses

A factor of how much physical activity a child gets could be determined by the level of mastery of fundamental movement skills that are needed for the establishment of skills used in many forms of adult physical activity. Children who master a number of fundamental movement skills are more likely to be physically active and they also may be more likely to take part in physical activity when being compared to peers with a lesser level of motor skill proficiency. Children who are considered overweight tend to engage less often in physical activities, which in turn may prevents them from …

Demographics Of A Commercially Exploited Population Of Flathead Catfish (Pylodictis Olivaris) In The Wabash River, Cassi Jo Moody-Carpenter

Masters Theses

Flathead catfish, Pylodictis olivaris, are a popular game and commercial fish in the Midwestern United States. In the lower 322 km of the Wabash River, flathead catfish are commercially and recreationally harvested by Illinois and Indiana fishers. Current management regulations are different between the two states; Illinois and Indiana have minimum length limits of 381 and 254 mm, respectively. Indiana has proposed changing their minimum length limit to 381 mm and allowing only one fish> 889 mm to be harvested per day. My study examined the current status of flathead catfish in the Wabash River to determine a standardized …

Production Of 1,3-Propanediol From Glycerol Under Haloalkaline Conditions By Halanaerobium Hydrogeniformans, Daniel William Roush

Masters Theses

"With increased demands around the world to make modern lifestyles more environmentally friendly, the chemical commodity market has rapidly shifted. Through new technologies in chemical production, certain high value products have oversaturated the market and have become high-volume, low value waste products. The expansion of biodiesel production offers a prime example; high volumes of glycerol byproduct from this process have shifted glycerol from a high priced commodity to a common waste product. A number of microorganisms are known to synthesize the polymeric precursor 1,3-propanediol from glycerol; however, crude glycerol from biodiesel production creates a harsh environment for most microbes, and …

Eccentric Resistance Training And Blood Flow Restriction, Zachary Pope

Masters Theses

The purpose of this study was to compare the muscular strength and hypertrophic response following a four week training intervention involving resistance exercise utilizing only eccentric muscle contractions with, or without blood flow restriction (BFR), as well as a control group maintaining their current training regimen. Sixteen young male volunteers were recruited to participate in this study. Prior to the training intervention, subjects attended three sessions in order to obtain demographic information (age, height, body mass) and familiarize each of the participants with the testing and training equipment. After the familiarization session, muscular strength was assessed via elbow flexion one …

Determination Of Structural Stabilities Of Metal-Free Porphyrin Cytochrome C, Zinc Cytochrome C, And Cobalt Cytochrome C, Usha K. Tottempudi

Masters Theses

No abstract provided.