Life Sciences Commons^™

Spatiotemporal Analysis Of Gene Flow Patterns Among Woodland Salamander Populations Inhabitating Contrasting Landscapes, Alexander C. Cameron

Masters Theses

Dispersal is a fundamental evolutionary process that serves as a mechanism by which local populations remain connected through space. Habitat loss and fragmentation remain widespread threats to biodiversity globally, and therefore it is imperative to understand how dispersal patterns are affected by anthropogenic modifications of the environment. Using a panel of 10 novel microsatellite loci, I estimated gene flow patterns over historical and contemporary timescales among populations of Eastern Red-backed Salamanders (Plethodon cinereus) in a previously unstudied portion of the species range. Four focal populations reside within a highly fragmented urban center whereas the remaining four focal populations persist in …

Artificial Neural Network Approach To Predict Blast-Induced Ground Vibration, Airblast And Rock Fragmentation, Raymond Ninnang Tiile

Masters Theses

"Blasting has been widely used as an economical and cheap way of rock breakage in mining and civil engineering applications. An optimal blast yields the best fragmentation in a safe, economic and environmentally friendly manner. The degree of fragmentation is vital as it determines to a large extent the utilization of equipment, productivity and mill throughput. Explosive energy, besides rock fragmentation, creates health and safety issues such as ground vibration, air blast, fly rock, and back breaks among others. As a result, the explosive energy impacts structures and buildings located in the vicinity of the blasting operation, and causes human …

Seeing Red In A Sea Of Green: Anthocyanin Production In A Carnivorous Plant, Pinguicula Planifolia, Jenna Annis

Masters Theses

The Southeastern United States is a biological hot-spot for carnivorous plants, with over half of the North American species occurring along the Gulf Coast. Pinguicula planifolia Chapman is one of six carnivorous perennial butterwort species found in the Florida Panhandle. Among these species, only P. planifolia expresses a distinct variation of red coloration on its leaves. The functional role of foliar anthocyanins may include stress response to drought and nutrient deficiency, herbivory defense, free radical scavenging, and photoprotection. Carnivorous plant leaves face strong selection pressures to optimize prey capture and nutrient absorption. Given the frequency of these red pigments in …

Maximal Strength Effects Of Cross Education Training On The Elbow Flexors, Molly Dyer

Masters Theses

The purpose of this study was to compare the absolute and relative changes in maximal bilateral elbow flexion strength increase after a four-week intervention protocol between a unilateral and bilateral resistance training program in college age females.

Methods: Five non-athlete females, with a mean age of 21.6 years, completed the study. Eligible subjects were randomly assigned to one of two groups; unilateral elbow flexion resistance training (n=2) or bilateral elbow flexion resistance training (n=3). Both groups completed a four-week resistance training three days per week using three sets of ten repetitions at 65% of their predicted one repetition maximum. Maximal …

Successional Changes In Leaf Nutrient Concentrations Of Woody And Herbaceous Species, Daniel Walter Kuchta

Masters Theses

Leaf nutrient concentrations are an example of a functional trait, a trait that can be used to understand community dynamics by observing how plants interact with their environment. I explored how leaf nutrient concentrations were affected over successional time by environmental changes. The majority of prior research on functional traits focuses on either woody or herbaceous species, but not both life forms simultaneously. To address this, I also explored the successional changes to leaf nutrient concentrations, separating the plant community into woody and herbaceous species.

Healthy, mature leaves were taken from 122 taxa of woody and herbaceous species in a …

Low-Head Dams On Habitat, Fish Functional Guilds And Genetic Structuring In A Midwestern River System, Shannon Cassandra Frary Smith

Masters Theses

The natural flow regime of the majority of rivers in the United States has been altered by anthropogenic structures. This loss of connectivity plays a strong role in shaping river ecosystems by altering physical habitat characteristics and shaping fish community assemblages. Although the impacts of large dams on river systems are well documented and often easy to observe, there are fewer studies on the effects of smaller low-head dams. Additionally, the influences of low-head dams on the genetic structuring of small-bodied riverine fishes have yet to be fully explored. I assessed the effects of two low-head dams on the Vermilion …

Demographics And Parasites Of Spotted Bass In The Wabash River, Evan C. Boone

Masters Theses

Spotted Bass Micropterus punctulatus Rafinesque are a popular sport fish primarily found in the streams and reservoirs of the south. The Wabash River, a large tributary of the Ohio River, contains a naturally reproducing population on the northern boundary of their range. Currently, the lower Wabash River is monitored using two different sampling designs, the Long Term Electrofishing Program monitors community assemblages using stratified random sampling whereas the Illinois Department of Natural Resources uses a fixed sampling design. Due to the wide distribution but low abundance of Spotted Bass throughout this drainage, captures from each design were compared to assess …

Diel And Seasonal Patterns Of Channel Catfish Movement And Habitat Use In The Lower Wabash River, Hanna Gibbs Kruckman

Masters Theses

Channel catfish Ictalurus punctatus are commonly found throughout the Mississippi River basin and support commercial and recreational fisheries in many large river systems. Understanding population demographics as well as movement patterns and habitat usage can provide a more holistic approach to species management and conservation. Within a 16-km stretch of the lower Wabash River, 27 channel catfish were implanted with acoustic transmitters to monitor fine scale movement and habitat use from September 2014 through April 2016. Channel catfish were located using active tracking during two types of tracking events. Site tracking occurred only during daylight hours and diel tracking monitored …

Diversity Of The Beneficial Bacterium Oxalobacter Formigenes Isolated From The Human Gut, Karen Shaw

Masters Theses

Oxalobacter formigenes is an anaerobic, oxalate degrading organism that colonizes in the mammalian intestinal tract. Currently, O. formigenes is divided into two groups via PCR of the oxc gene. Pulsed field gel electrophoresis (PFGE) is a technique used to resolve large pieces of DNA. Typically, PFGE is used to identify differences between strains for pathogenic bacteria, but this study sought to use it to further understand the diversity of a probiotic organism. This study aimed to develop a methodology for utilizing PFGE to examine O. formigenes. The methodology involved lysing O. formigenes cells in plugs, first in proteinase K, …

Stopover Ecology Of Neotropical Migratory Songbirds In The Northern Yucatan Peninsula, Mexico, Lauren E. Solomon

Masters Theses

Chapter I. Full-service hotels, convenience stores or fire escapes? Evaluating function of stopover sites for Neotropical migrants in the northern Yucatan Peninsula

Nearctic-Neotropical migratory songbirds incur the highest mortality rates during their annual migrations. Migratory songbirds use a network of stopover sites to rest, refuel, or seek refuge during times of poor weather conditions; and the time and energy expended at these sites exceeds that of migratory flight. In order to conserve stopover sites with the highest value to Neotropical migrants, a conceptual framework was developed to classify stop over sites into three functional categories based on their function for …

Quantifying Bat Detection Survey Methods And Activity Patterns, Tara C. Hohoff

Masters Theses

Bats have an astonishing diversity and provide vital ecosystem services in an array of different niches. In North America, most species of bats are insectivores and tend to be frequently overlooked for their important ecosystem role providing insect control. As bat populations have declined in recent years, farmers, land managers, conservationists, and bat enthusiasts have wondered what we can do to protect our local bat populations. As a first step, we need to develop methods that more effectively survey for rare species of bats. By performing inefficient surveys, we are doing a disservice to our funding agencies providing misinformation that …

Impact Of Transcription Factors On Fibroblast Specific Gene Silencing In Somatic Cell Hybrids, Tania Ray

Masters Theses

As totipotent cells differentiate to specific cell types in multicellular organisms, certain sets of genes are turned off (gene silencing/gene extinction) while others are turned on (gene activation). Cell type specific gene silencing and gene activation is the basis of cell differentiation. Somatic cell hybrids which are produced by fusing different types of somatic cells from two different tissues have been used as a valuable resource to discern the phenomenon of lineage- specific gene extinction. Identification of regulatory factors that mediate gene extinction in hybrids are key to understanding regulatory mechanisms that govern cell differentiation in a multicellular organism. Transcription …

Characterization Of Insertion Sequence Is605 In Halanaerobium Hydrogeniformans, Michael C. Sadler

Masters Theses

"Insertion sequences are the smallest prokaryotic transposable elements. These genes play a significant evolutionary role by promoting genome plasticity. Insertion sequences are highly diverse elements that have largely been uncharacterized. As such, the ability to accurately identify, annotate, and infer genomic impact of insertion sequences is lacking. The study of new insertion sequences contributes knowledge to their annotation and evolution. Halanaerobium hydrogeniformans is a unique organism with an abnormally high number of insertion sequences. A family of insertion sequences, IS200/605, showed several interesting distinctions from other elements in the genome, including severe open reading frame degradation, and was characterized in …

Correlation Between Sleep And Lifespan In Drosophila Melanogaster, Courtney H. Fiebelman

Masters Theses

”Sleep has previously been associated with lifespan. Monitoring sleep in any given fly over their lifetime facilitates the ability to predict the lifespan of that given fly. Using this estimate, lifespan can potentially correlate with biological age to identify when health parameters have declined.

To confirm that the prediction algorithm could identify short and long-lived flies, glutathione levels in heads and bodies were compared between two groups. The results showed this to be consistent in the bodies of wild-type Canton S male flies, and showed that glutathione was decreased in the predicted biologically older flies. These data show that glutathione …

Divergent Responses Of Cryptic Invasive Watermilfoil To Treatment With Auxinic Herbicides In A Large Michigan Lake, Syndell R. Parks

Masters Theses

Invasive plants are a major concern for environmental managers. Cryptic invasive taxa present additional challenges because of their potential to respond differently to management efforts. Invasive Eurasian watermilfoil (Myriophyllum spicatum) and hybrid watermilfoil (Myriophyllum spicatum x Myriophyllum sibiricum) cannot be reliably distinguished based on morphological characters and are therefore cryptic taxa. Laboratory studies show that on average, hybrid watermilfoil grows faster, branches more, and is less responsive to standard control measures developed for Eurasian watermilfoil. These laboratory results predict less effective control of hybrid watermilfoil in mixed populations treated uniformly with one of these control measures. However, to date there …

Adult Rainbow Trout Habitat Selection In The Henry’S Fork Of The Snake River, Idaho, Zachary Kuzniar

Masters Theses

Determining habitat selection for an organism across a geographic distribution is a primary challenge in modern behavioral ecology. Quantifying habitat use becomes increasingly difficult for species that exhibit complex life histories and complementary habitat requirements. Rainbow trout are an archetypal example due to their tendency to form local populations across a diversity of environments. The Henry’s Fork of the Snake River provides an opportunity to utilize microhabitat selection models to quantify stream features that may drive adult rainbow trout behavior at the local scale. In particular, within an 8.5 km, low gradient, groundwater-dominated reach that exhibits a general lack of …

Expression Of Insulin Responsive Genes In Insulin Resistant Conditions, And The Effect Of Selenium On Gene Expression, David L. Ruff

Masters Theses

Chronically high blood glucose levels lead to many problems, such as insulin resistance, the hallmark of Type II diabetes. Increased flux through the hexosamine biosynthesis pathway is one mechanism by which high glucose as well as glucosamine has been shown to induce insulin resistance. This study tests the effects of glucosamine induced insulin resistance on insulin regulation of the metabolic genes glucose-6-phosphate dehydrogenase (G6PDH) and fatty acid synthase (FAS) as well as insulin responsive proteins tribbles homolog (TRIB3) and sterol regulatory element binding protein (SERBP-1c) 1c.

Selenium, a micronutrient has been shown to be an effective insulin mimetic in Type …

Evaluating Accuracy And Bias In Genetic Monitoring Under Scenarios Of Population Decline, Susan K. Munster

Masters Theses

Accurate and unbiased estimates of current effective population size are of primary importance in making informed decisions for conservation purposes. One species of concern, the eastern red bat (Lasiurus borealis), is experiencing ongoing population losses due to wind turbine collisions. The proportion of the population being affected is currently unknown, although recent estimates of total fatalities at wind turbines over the time from 2000-2011 are in the hundreds of thousands for this species alone. The roosting habits of eastern red bats make it difficult to monitor their census population size (Nc); thus, genetic estimates of effective population size (Ne) may …

Microcystin Accumulation In Fish Muscle Tissue: Exploring The Safety Of Fish Consumption In Several Michigan Water Bodies, Heather Snyder

Masters Theses

A variety of anthropogenic factors, including global climate change and eutrophication, are causing increases in cyanobacterial abundance. Increased prevalence of cyanobacteria can be detrimental, as some genera of cyanobacteria have the ability to produce toxic secondary metabolites known as cyanotoxins. The cyanotoxin microcystin- a hepatotoxin, is the most ubiquitous and toxic cyanotoxin in freshwater ecosystems, and has been quantified in a number of aquatic organisms. Microcystin was quantified in 8 fish species from St. Mary’s River in June, Saginaw Bay in September, and from Stony Creek Lake in October in 2014 by the Michigan Department of Environmental Quality and the …

Toxin Production And Population Dynamics Of Gloeotrichia Echinulata With Considerations Of Global Climate Change, Sarah Stamann

Masters Theses

Global climate change has been identified as a driver for increasing cyanobacteria blooms world-wide. Blooms of the cyanobacterium, Gloeotrichia echinulata, (hereafter, G. echinulata) have been observed in Silver Lake (Oceana County, MI), often forming dense surface scums. This organism is known to produce the hepatotoxin, microcystin- LR, and its growth is linked to phosphorus accumulation from sediment and temperature.

A series of experiments at ambient and elevated temperatures (+2° and +6°above ambient) with sediment from four locations in Silver Lake with varying phosphorus concentrations were conducted to examine the effect of these variables on G. echinulata growth. These …

Great Lake Island Biogeography Of Plethodon Cinereus: Effect Of Island Elevation On Color Polymorphism, Cameron N. Eddy

Masters Theses

Islands have long fascinated ecologists and evolutionary biologists because they provide replicated systems with which to test hypotheses regarding evolutionary and ecological theory. Because islands are relatively simple systems, they enable researchers to isolate specific factors responsible for observed phenomena. Many current questions in ecology and evolutionary biology have been addressed in island systems. For example, factors involved in the genetic divergence of populations are easier to discern in island populations because confounding effects of gene flow from adjacent populations are limited. This study focuses on isolated island populations of the color polymorphic Eastern Red-backed Salamander (Plethodon cinereus) …

Invasive Asian Earthworms Negatively Impact Woodland Salamanders: Competitive Exclusion, Foraging Interference, And Habitat Degradation Reduce Salamander Density, Julie L. Ziemba

Masters Theses

Asian earthworms (Amynthas spp.) are invading North American forests and consuming the vital detrital layer that forest floor biota (including the Eastern Red-backed Salamander, Plethodon cinereus) rely on for protection, food, and habitat. Salamander population decline has been associated with European earthworm-mediated leaf litter loss, but there have been few studies on the interactions between Amynthas spp. and P. cinereus. Since the large, active Amynthas spp. earthworms spatially overlap with salamanders beneath natural cover objects and in detritus, they may compound the negative consequences of resource degradation by physically disturbing important salamander activities (foraging, mating, and egg brooding). I predicted …

Evolutionary Convergence Of The Caffeine Biosynthetic Pathway In Chocolate Followed Duplication Of A Constrained Ancestral Enzyme, Andrew J. O'Donnell

Masters Theses

Caffeine biosynthesis is widely distributed in flowering plants and requires three consecutive methylation steps of xanthine alkaloids. Genes that have previously been reported to participate in the multi-step pathway in Coffea sp. (coffee) and Camellia sinensis (tea) encode members of the SABATH family of methyltransferases. Two genes highly expressed in fruits of Theobroma cacao (cacao) are orthologous to the caffeine genes in tea and appear to have diversified following gene duplication. Biochemical characterization of the enzymes (XMTs) encoded by these genes strongly suggest an unprecedented major pathway to theobromine, a precursor to caffeine. These findings imply that caffeine biosynthesis evolved …

One Fish, Two Fish, Red Fish, Blue Fish: The Analysis Of The Specter Cell Cycle Mutant In Zebrafish, Tetiana Petrachkova

Masters Theses

Cell division is controlled by genes that regulate the cell cycle. Here we show that the zebrafish specter (spr) mutant is mutation in the cyclin B1 gene, a gene necessary for the G2 to M transition of the cell cycle.

The spr mutation mapped to the cyclin B1 gene. Sequencing showed a transition (C139→T) that caused a nonsense mutation in exon 2 of the cyclin B1 gene. In situ hybridization of cyclin B1 revealed that the mRNA is absent in the mutant embryo by gastrulation. We found that the earliest visible mutant phenotype was a darkening of the head caused …

Microbial Community Analysis From Petroleum-Contaminated Sediments With High Magnetic Susceptibility, Anja E. Williams

Masters Theses

Microbial biodegradation is an increasingly incorporated method of hydrocarbon mineralization during oil spill cleanup. To monitor biodegradation, magnetic susceptibility (MS) is a geophysical tool that detects changes in sediments’ magnetism, possibly caused by microbial activity, for example by anaerobic iron reduction that can induce magnetite formation. Furthermore, the high input of carbon from an oil spill makes other required nutrients, like nitrogen, limiting. The first study goal was to characterize the microbial communities present at high levels of MS with 16S rRNA gene clone libraries at the petroleum-contaminated site in Bemidji, Minnesota. Sequences with high similarity to known iron-reducers were …

Exploring The Oncolytic Potentail Of A Double Knock-Out Tanapoxvirus Containing Flic Transgene, Esaw W. Kurban

Masters Theses

Since the emergence of oncolytic viruses (OVs), OVs have seen success in clinical trials and are a vital alternative treatment for cancer. Colorectal cancers are diseases which cause substantial health issues in the developed world, but current invasive treatment methods do not perform well in patients with advanced disease. We have explored the potential of tanapoxvirus (TPV) for its oncolytic virothrapy in two manners; specific gene deletion and non-targeted gene deletion. The non-targeted mutation of TPV’s genome was attempted using N-methyl-N-nitro-N-nitrosoguanidine (NTG) and N-ethyl-N-nitrosourea (ENU) as alkylating chemical. Specific gene deletion involved knocking-out a thymidine kinase gene (TPV-66R) and a …

Progressive Decline Of Testicular Function In Leptinreceptor Deficient Obese Mice, Jennifer Long

Masters Theses

The incidence of obesity and metabolic syndrome among the human population is increasing, but the effects on male fertility are unresolved. Leptin insensitivity appears to show a consistent relationship between obesity and fertility problems in men. Genetically modified mice lacking the leptin hormone (ob/ob) or leptin receptor (db/db) are reported to be subfertile and/or infertile but there is only minimal information about testicular function (sperm and hormone production) and the progression of infertility. Therefore, this study was designed to investigate testicular function using a leptin-receptor-deficient obese mouse model (the POUND mouse; Charles River). Testicular sperm production is reduced in POUND …

A Gravity Investigation Of The Tobacco Root Batholith Southwest Montana, Stephen Charles Tatum

Masters Theses

The objective of this research was to delineate and profile the Late Cretaceous Tobacco Root batholith in southwestern Montana through the application of the gravitational method. This survey was accomplished by obtaining 232 gravity measurements in four profiles across the batholith. After correcting for known variations in the gravity field, a Bouguer anomaly map of the batholith and surrounding host rocks was created. Four residual gravity profiles and map, created by subtracting the regional gravity from the Bouguer anomaly, reveal a maximum negative gravity anomaly in the center portion of the batholith which is parallel to the trend of the …

The Effects Of Nitrogen Availability And Competition On First Year Perrennial Bunchgrass Growth And Allocation, Jeffrey T. Walker

Masters Theses

Improving seedling survival of perennial bunchgrasses is a key goal of restoration programs in the Intermountain West. Two perennial bunchgrass species commonly used in restoration programs (Agropyron desertorum and Pseudoroegneria spicata) were exposed to two levels of N and competition treatments in a randomized complete block study in a pot study in eastern Oregon. I documented uptake, allocation and resorption of N in plants during the first year of growth. Agropyron desertorum had significantly higher rates of N uptake than P. spicata, but A. desertorum maintained lower tissue N concentrations, suggesting that P. spicata was more likely to …

Female Mate Choice In A Mainland Population Of The Strawberry Poison Frog, Oophaga Pumilio, Meaghan Gade

Masters Theses

Sexual selection and female mate choice are driving forces in the evolution and maintenance of biological diversity, and may function in the evolution of many secondary sexual characteristics throughout multiple taxa. Female mate selection has been experimentally shown to drive the evolution of color between the polytypic populations of the dendrobatid frog, Oophaga pumilio, in the Bocas del Toro archipelago in Panama. However, limited studies exist examining biologically relevant female mate choices within a single population. Using analogous experimental arenas from previous studies, females were presented with two males exhibiting phenotypic extremes from within the same population at La Selva …