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Articles 271 - 300 of 2617
Full-Text Articles in Life Sciences
A Hierarchy Of Interactions Between Pathogenic Virus And Vertebrate Host, Robert Friedman
A Hierarchy Of Interactions Between Pathogenic Virus And Vertebrate Host, Robert Friedman
Faculty Publications
This review is of basic models of the interactions between a pathogenic virus and vertebrate animal host. The interactions at the population level are described by a predatory-prey model, a common approach in the ecological sciences, and depend on births and deaths within each population. This ecological perspective is complemented by models at the genetical level, which includes the dynamics of gene frequencies and the mechanisms of evolution. These perspectives are symmetrical in their relatedness and reflect the idealized forms of processes in natural systems. In the latter sections, the general use of deep learning methods is discussed within the …
Process Evaluation Methods And Results From The Health In Pregnancy And Postpartum (Hipp) Randomized Controlled Trial, Sarah Wilcox Phd, Alicia A. Dahl, Alycia K. Boutté, Jihong Liu Sc.D., Kelsey Day, Gabrielle Turner-Mcgrievy Ph.D., Rd, Ellen Wingard
Process Evaluation Methods And Results From The Health In Pregnancy And Postpartum (Hipp) Randomized Controlled Trial, Sarah Wilcox Phd, Alicia A. Dahl, Alycia K. Boutté, Jihong Liu Sc.D., Kelsey Day, Gabrielle Turner-Mcgrievy Ph.D., Rd, Ellen Wingard
Faculty Publications
Background
Excessive gestational weight gain has increased over time and is resistant to intervention, especially in women living with overweight or obesity. This study described the process evaluation methods and findings from a behavioral lifestyle intervention for African American and white women living with overweight and obesity that spanned pregnancy (≤ 16 weeks gestation) through 6 months postpartum.
Methods
The Health in Pregnancy and Postpartum (HIPP) study tested a theory-based behavioral intervention (vs. standard care) to help women (N = 219; 44% African American, 29.1 ± 4.8 years) living with overweight or obesity meet weight gain guidelines in pregnancy and …
A Latitudinal Signal In The Relationship Between Species Geographic Range Size And Climatic Niche Area, Tad Dallas, Andrew Kramer
A Latitudinal Signal In The Relationship Between Species Geographic Range Size And Climatic Niche Area, Tad Dallas, Andrew Kramer
Faculty Publications
Species with broader niches may have the opportunity to occupy larger geographic areas, assuming no limitations on dispersal and a relatively homogeneous environmental space. Here, we use data on a large set of mammal (n = 1225), bird (n = 1829) and tree (n = 341) species to examine the 1) relationship between geographic range size and climatic niche area, 2) influence of species traits on species departures from this relationship and 3) sensitivity of these relationships to how species range size and climatic niche area are estimated. We find positive geographic range size–climatic niche area relationships for all taxa, …
Direct Measurement Of Stokes–Einstein Diffusion Of Cowpea Mosaic Virus With 19 Μs-Resolved Xpcs, Kacper Switalski, Jingyu Fang, Luxi Li, Miaoqi Chu, Erik Sarnello, Pete Jemian, Tao Li, Qian Wang, Qingteng Zhang
Direct Measurement Of Stokes–Einstein Diffusion Of Cowpea Mosaic Virus With 19 Μs-Resolved Xpcs, Kacper Switalski, Jingyu Fang, Luxi Li, Miaoqi Chu, Erik Sarnello, Pete Jemian, Tao Li, Qian Wang, Qingteng Zhang
Faculty Publications
Brownian motion of Cowpea mosaic virus (CPMV) in water was measured using small-angle X-ray photon correlation spectroscopy (SA-XPCS) at 19.2 mu s time resolution. It was found that the decorrelation time tau(Q) = 1/DQ(2) up to Q = 0.091 nm(-1). The hydrodynamic radius R-H determined from XPCS using Stokes-Einstein diffusion D = kT/(6 pi eta R-H) is 43% larger than the geometric radius R-0 determined from SAXS in the 0.007 M K3PO4 buffer solution, whereas it is 80% larger for CPMV in 0.5 M NaCl and 104% larger in 0.5 M (NH4)(2)SO4, a possible effect of aggregation as well as …
The Exercise Metabolome: Acute Aerobic And Anaerobic Signatures, Joseph K. Pellegrino, Tracy G. Anthony, Peter Gillies, Shawn M. Arent
The Exercise Metabolome: Acute Aerobic And Anaerobic Signatures, Joseph K. Pellegrino, Tracy G. Anthony, Peter Gillies, Shawn M. Arent
Faculty Publications
Background
Exercise modality differentially alters body composition and physical performance. Metabolic changes underlying these outcomes can be tracked through assessment of circulating metabolites. Here, global responses to an acute bout of aerobic or anaerobic exercise were compared in the serum of male and female subjects using a discovery-based metabolomics platform.
Methods
On separate days, 40 healthy, active participants completed 45 min of aerobic cycling or resistance exercise, and blood samples were collected at rest, immediately after (T1) and 1 hour post-exercise (T2) to examine the serum metabolomic landscape.
Results
The two exercise metabolomes appeared more similar than different in this …
Response Of Soil Bacterial Diversity, Predicted Functions And Co-Occurrence Patterns To Nanoceria And Ionic Cerium Exposure, Jie Zhang, Hui Sheng, Yan-Meng Shang, Jamie Lead, Zhang-Zhen Guo, Jian-Ping Hong
Response Of Soil Bacterial Diversity, Predicted Functions And Co-Occurrence Patterns To Nanoceria And Ionic Cerium Exposure, Jie Zhang, Hui Sheng, Yan-Meng Shang, Jamie Lead, Zhang-Zhen Guo, Jian-Ping Hong
Faculty Publications
Release of nanoceria (nCeO2) into the environment has caused much concern about its potential toxicity, which still remains poorly understood for soil microorganisms. In this study, nanoceria and cerium (III) nitrate at different doses (10, 100 and 500 mg/kg) were applied to bok choy (Brassica rapa subsp. chinensis), grown in potting soil, to investigate the responses of soil bacterial communities to nanoceria (NC) and ionic cerium (IC) applications. The results showed that bacterial richness was slightly increased in all cerium treatments relative to the negative control without cerium amendment (CK), but a significant increase was only found in …
Screening And Assessment Of Cancer-Related Fatigue: An Executive Summary And Road Map For Clinical Implementation, Joy C. Cohn, Shana Harrington Pt, Ph.D., Jeannette Q. Lee, Daniel Malone, Mary Insana Fisher
Screening And Assessment Of Cancer-Related Fatigue: An Executive Summary And Road Map For Clinical Implementation, Joy C. Cohn, Shana Harrington Pt, Ph.D., Jeannette Q. Lee, Daniel Malone, Mary Insana Fisher
Faculty Publications
Background:
Cancer-related fatigue (CRF) prevalence is reported as high as 90%. Cancer-related fatigue is multidimensional and associated with lower health-related quality of life. Effective screening and assessment are dependent upon use of valid, reliable, and clinically feasible measures. This Executive Summary of the Screening and Assessment of Cancer-related Fatigue Clinical Practice Guideline provides recommendations for best measures to screen and assess for CRF based on the quality and level of evidence, psychometric strength of the tools, and clinical utility.
Methods:
After a systematic review of the literature, studies evaluating CRF measurement tools were assessed for quality; data extraction included psychometrics …
Fund Behavioral Science Like The Frameworks We Endorse: The Case For Increased Funding Of Preliminary Studies By The National Institutes Of Health, Michael Beets, Christopher Pfledderer, Lauren Von Klinggraeff, Sarah Burkart, Bridget Armstrong
Fund Behavioral Science Like The Frameworks We Endorse: The Case For Increased Funding Of Preliminary Studies By The National Institutes Of Health, Michael Beets, Christopher Pfledderer, Lauren Von Klinggraeff, Sarah Burkart, Bridget Armstrong
Faculty Publications
Innovative, groundbreaking science relies upon preliminary studies (aka pilot, feasibility, proof-of-concept). In the behavioral sciences, almost every large-scale intervention is supported by a series of one or more rigorously conducted preliminary studies. The importance of preliminary studies was established by the National Institutes of Health (NIH) in 2014/2015 in two translational science frameworks (NIH Stage and ORBIT models). These frameworks outline the essential role preliminary studies play in developing the next generation of evidence-based behavioral prevention and treatment interventions. Data produced from preliminary studies are essential to secure funding from the NIH’s most widely used grant mechanism for large-scale clinical …
Muscular Strength And Carotid Intima-Media Thickness In Physically Fit Young Adults: The Chief Atherosclerosis Study, Gen-Min Lin, Kun-Zhe Tsai, Yun-Chen Chang, Wei-Chun Huang, Xuemei Sui M.D., M.P.H., Ph.D., Carl J. Lavie
Muscular Strength And Carotid Intima-Media Thickness In Physically Fit Young Adults: The Chief Atherosclerosis Study, Gen-Min Lin, Kun-Zhe Tsai, Yun-Chen Chang, Wei-Chun Huang, Xuemei Sui M.D., M.P.H., Ph.D., Carl J. Lavie
Faculty Publications
Background: Greater muscular strength (MusS) has been found to have an inverse association with subclinical atherosclerosis in children, as well as with mortality from cardiovascular diseases (CVDs) in middle-aged and elderly individuals. However, the association of the degree of MusS with atherosclerosis may differ by sex and has not been clarified in young adults. Methods and Results: A total of 1021 Taiwanese military personnel, aged 18–40 years, participated in annual health examinations in 2018–2020. MusS was separately assessed by 2-min push-up and 2-min sit-up numbers. Subclinical atherosclerosis was measured by the left carotid bulb intima–media thickness (cIMT) using high-resolution ultrasonography. …
Genome-Wide Association Analyses Of Physical Activity And Sedentary Behavior Provide Insights Into Underlying Mechanisms And Roles In Disease Prevention, Zhe Wang, Andrew Emmerich, Nicolas J. Pillon, Tim Moore, Daiane Hemerich, Marilyn C. Cornelis, Eugenia Mazzaferro, Siacia Broos, Tarunveer S. Ahluwalia, Traci M. Bartz, Amy R. Bentley, Lawrence F. Bielak, Mike Chong, Audrey Y. Chu, Diane Berry, Rajkumar Dorajoo, Nicole D. Dueker, Elisa Kasbohm, Bjarke Feenstra, Mary F. Feitosa, Mark A. Sarzynski Ph.D., Faha, Facsm, Et. Al.
Genome-Wide Association Analyses Of Physical Activity And Sedentary Behavior Provide Insights Into Underlying Mechanisms And Roles In Disease Prevention, Zhe Wang, Andrew Emmerich, Nicolas J. Pillon, Tim Moore, Daiane Hemerich, Marilyn C. Cornelis, Eugenia Mazzaferro, Siacia Broos, Tarunveer S. Ahluwalia, Traci M. Bartz, Amy R. Bentley, Lawrence F. Bielak, Mike Chong, Audrey Y. Chu, Diane Berry, Rajkumar Dorajoo, Nicole D. Dueker, Elisa Kasbohm, Bjarke Feenstra, Mary F. Feitosa, Mark A. Sarzynski Ph.D., Faha, Facsm, Et. Al.
Faculty Publications
Although physical activity and sedentary behavior are moderately heritable, little is known about the mechanisms that influence these traits. Combining data for up to 703,901 individuals from 51 studies in a multi-ancestry meta-analysis of genome-wide association studies yields 99 loci that associate with self-reported moderate-to-vigorous intensity physical activity during leisure time (MVPA), leisure screen time (LST) and/or sedentary behavior at work. Loci associated with LST are enriched for genes whose expression in skeletal muscle is altered by resistance training. A missense variant in ACTN3 makes the alpha-actinin-3 filaments more flexible, resulting in lower maximal force in isolated type IIA muscle …
Impact Of Virtual Vs. In-Person School On Children Meeting The 24-H Movement Guidelines During The Covid-19 Pandemic, Christopher D. Pfledderer, Michael Beets, Sarah Burkart Mph, Ph.D., Elizabeth Adams Potter, Robert Weaver Med, Phd, Xuanxuan Zhu, Bridget Armstrong
Impact Of Virtual Vs. In-Person School On Children Meeting The 24-H Movement Guidelines During The Covid-19 Pandemic, Christopher D. Pfledderer, Michael Beets, Sarah Burkart Mph, Ph.D., Elizabeth Adams Potter, Robert Weaver Med, Phd, Xuanxuan Zhu, Bridget Armstrong
Faculty Publications
The pandemic mitigation strategy of closing schools, while necessary, may have unintentionally impacted children’s moderate-to-vigorous physical activity (MVPA), sleep, and time spent watching screens. In some locations, schools used hybrid attendance models, with some days during the week requiring in-person and others virtual attendance. This scenario offers an opportunity to evaluate the impact of attending in-person school on meeting the 24-h movement guidelines. Children (N = 690, 50% girls, K–5th) wore wrist-placed accelerometers for 14 days during October/November 2020. Parents completed daily reports on child time spent on screens and time spent on screens for school. The schools’ schedule was …
Participatory And Spatial Analyses Of Environmental Justice Communities' Concerns About A Proposed Storm Surge And Flood Protection Seawall, Judith Taylor, Norman S. Levine, Ernest Muhammad, Dwayne E. Porter, Annette M. Watson, Paul A. Sandifer
Participatory And Spatial Analyses Of Environmental Justice Communities' Concerns About A Proposed Storm Surge And Flood Protection Seawall, Judith Taylor, Norman S. Levine, Ernest Muhammad, Dwayne E. Porter, Annette M. Watson, Paul A. Sandifer
Faculty Publications
In response to increasing threats from sea-level rise and storm surge, the City of Charleston, South Carolina, and the US Army Corps of Engineers (USACE) propose constructing a seawall around the Charleston peninsula. The proposed seawall will terminate close to lower wealth, predominantly minority communities. These communities are identified as environmental justice (EJ) communities due to their history of inequitable burdens of industrial and urban pollution and proximity to highways and US Environmental Protection Agency (EPA) designated Superfund sites. The present study documents community concerns and opinions related to the proposed seawall, existing flooding problems, and other issues. The project …
Cardiorespiratory Fitness And The Risk Of All-Cause, Cardiovascular And Cancer Mortality In Men With Hypercholesterolemia, Xuemei Sui M.D., M.P.H., Ph.D., Mark A. Sarzynski Facsm, Nicole Gribben, Jiajia Zhang Ph.D., Carl J. Lavie
Cardiorespiratory Fitness And The Risk Of All-Cause, Cardiovascular And Cancer Mortality In Men With Hypercholesterolemia, Xuemei Sui M.D., M.P.H., Ph.D., Mark A. Sarzynski Facsm, Nicole Gribben, Jiajia Zhang Ph.D., Carl J. Lavie
Faculty Publications
Background: Whether higher cardiorespiratory fitness (CRF) confers protection against cardiovascular disease (CVD) in individuals with manifest hypercholesterolemia is poorly understood. Methods: Participants were 8920 men aged 20–82 years with hypercholesterolemia but no history of CVD and/or cancer and who received a preventive examination at the Cooper Clinic in Dallas, TX, USA, during 1974–2001. CRF was quantified as maximal treadmill test duration and was grouped for analysis as low, moderate, or high based on the traditional Aerobics Center Longitudinal Study cutpoints. Using Cox regression analyses, we computed hazard ratios and 95% confidence intervals for risk of mortality based on CRF. Results: …
Estimating R0 From Early Exponential Growth: Parallels Between 1918 Influenza And 2020 Sars-Cov-2 Pandemics, Grant Foster, Bret D. Elderd, Robert L. Richards, Tad Dallas
Estimating R0 From Early Exponential Growth: Parallels Between 1918 Influenza And 2020 Sars-Cov-2 Pandemics, Grant Foster, Bret D. Elderd, Robert L. Richards, Tad Dallas
Faculty Publications
The large spatial scale, geographical overlap, and similarities in transmission mode between the 1918 H1N1 influenza and 2020 SARS-CoV-2 pandemics together provide a novel opportunity to investigate relationships between transmission of two different diseases in the same location. To this end, we use initial exponential growth rates in a Bayesian hierarchical framework to estimate the basic reproductive number, R0, of both disease outbreaks in a common set of 43 cities in the United States. By leveraging multiple epidemic time series across a large spatial area, we are able to better characterize the variation in R0 across the …
Trade-Offs Between Risks Of Predation And Starvation In Larvae Make The Shelf Break An Optimal Spawning Location For Atlantic Bluefin Tuna, Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Mandy Karnauskas, Victoria J. Coles, Estrella Malca, Raúl Laiz-Carrión, Øyvind Fiksen, Patricia Reglero, Akihiro Shiroza, José M. Quintanilla Hervas, Trika Gerard, John T. Lamkin, Michael R. Stukel
Trade-Offs Between Risks Of Predation And Starvation In Larvae Make The Shelf Break An Optimal Spawning Location For Atlantic Bluefin Tuna, Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Mandy Karnauskas, Victoria J. Coles, Estrella Malca, Raúl Laiz-Carrión, Øyvind Fiksen, Patricia Reglero, Akihiro Shiroza, José M. Quintanilla Hervas, Trika Gerard, John T. Lamkin, Michael R. Stukel
Faculty Publications
Atlantic bluefin tuna (ABT) (Thunnus thynnus) travel long distances to spawn in oligotrophic regions of the Gulf of Mexico (GoM) which suggests these regions offer some unique benefit to offspring survival. To better understand how larval survival varies within the GoM a spatially explicit, Lagrangian, individual-based model was developed that simulates dispersal and mortality of ABT early life stages within realistic predator and prey fields during the spawning periods from 1993 to 2012. The model estimates that starvation is the largest cumulative source of mortality associated with an early critical period. However, elevated predation on older larvae is …
Systematic Review Of Functional Outcomes In Cancer Rehabilitation, Alix Sleight, Lynn H. Gerber, Timothy F. Marshall, Alicia Livinski, Catherine M. Alfano, Shana Harrington Pt, Ph.D., Ann Marie Flores, Aneesha Virani, Xiaorong Hu, Sandra A. Mitchell, Mitra Varedi, Melissa Eden, Samah Hayek, Beverly Reigle, Anya Kerkman, Raquel Neves, Kathleen Jablonoski, Eileen Danaher Hacker, Virginia Sun, Robin Newman, Karen Kane Mcdonnell, Allison L'Hotta, Alana Schoenhals, Nicole L. Stout
Systematic Review Of Functional Outcomes In Cancer Rehabilitation, Alix Sleight, Lynn H. Gerber, Timothy F. Marshall, Alicia Livinski, Catherine M. Alfano, Shana Harrington Pt, Ph.D., Ann Marie Flores, Aneesha Virani, Xiaorong Hu, Sandra A. Mitchell, Mitra Varedi, Melissa Eden, Samah Hayek, Beverly Reigle, Anya Kerkman, Raquel Neves, Kathleen Jablonoski, Eileen Danaher Hacker, Virginia Sun, Robin Newman, Karen Kane Mcdonnell, Allison L'Hotta, Alana Schoenhals, Nicole L. Stout
Faculty Publications
Objective
To systematically review the evidence regarding rehabilitation interventions targeting optimal physical or cognitive function in adults with a history of cancer and describe the breadth of evidence as well as strengths and limitations across a range of functional domains.
Data Sources
PubMed, Cumulative Index to Nursing and Allied Health Plus, Scopus, Web of Science, and Embase. The time scope was January 2008 to April 2019.
Study Selection
Prospective, controlled trials including single- and multiarm cohorts investigating rehabilitative interventions for cancer survivors at any point in the continuum of care were included, if studies included a primary functional outcome measure. …
The Marine Gastropod Conomurex Luhuanus (Strombidae) Has High-Resolution Spatial Vision And Eyes With Complex Retinas, Allison R. Irwin, Suzanne T. Williams, Daniel Isaac Speiser, Nicholas W. Roberts
The Marine Gastropod Conomurex Luhuanus (Strombidae) Has High-Resolution Spatial Vision And Eyes With Complex Retinas, Allison R. Irwin, Suzanne T. Williams, Daniel Isaac Speiser, Nicholas W. Roberts
Faculty Publications
All species within the conch snail family Strombidae possess large camera-type eyes that are surprisingly well-developed compared with those found in most other gastropods. Although these eyes are known to be structurally complex, very little research on their visual function has been conducted. Here, we use isoluminant expanding visual stimuli to measure the spatial resolution and contrast sensitivity of a strombid, Conomurex luhuanus. Using these stimuli, we show that this species responds to objects as small as 1.06 deg in its visual field. We also show that C. luhuanus responds to Michelson contrasts of 0.07, a low contrast sensitivity …
Compositionally And Density Stratified Igneous Terrain In Jezero Crater, Mars, Roger C. Wiens, Arya Udry, Olivier Beyssac, Cathy Quantin-Nataf, Nicolas Mangold, Agnès Cousin, Lucia Mandon, Tanja Bosak, Olivier Forni, Scott M. Mclennan, Violaine Sautter, Adrian Cousin, Karim Benzerara, Jeffrey R. Johnson, Lisa Mayhew, Sylvestre Maurice, Ryan B. Maurice, Ryan B. Anderson, Samuel M. Clegg, Larry Crumpler, Stanley M. Angel
Compositionally And Density Stratified Igneous Terrain In Jezero Crater, Mars, Roger C. Wiens, Arya Udry, Olivier Beyssac, Cathy Quantin-Nataf, Nicolas Mangold, Agnès Cousin, Lucia Mandon, Tanja Bosak, Olivier Forni, Scott M. Mclennan, Violaine Sautter, Adrian Cousin, Karim Benzerara, Jeffrey R. Johnson, Lisa Mayhew, Sylvestre Maurice, Ryan B. Maurice, Ryan B. Anderson, Samuel M. Clegg, Larry Crumpler, Stanley M. Angel
Faculty Publications
Before Perseverance, Jezero crater's floor was variably hypothesized to have a lacustrine, lava, volcanic airfall, or aeolian origin. SuperCam observations in the first 286 Mars days on Mars revealed a volcanic and intrusive terrain with compositional and density stratification.The dominant lithology along the traverse is basaltic, with plagioclase enrichment in stratigraphically higher locations. Stratigraphically lower, layered rocks are richer in normative pyroxene. The lowest observed unit has the highest inferred density and is olivine-rich with coarse (1.5 millimeters) euhedral, relatively unweathered grains, suggesting a cumulate origin. This is the first martian cumulate and shows similarities to martian meteorites, which also …
Drift Macroalgal Distribution In Northern Gulf Of Mexico Seagrass Meadows, Kelly M. Correia, Scott B. Alford, Benjamin A. Belgrad, Kelly M. Darnell, M. Zachary Darnell, Bradley T. Furman, Margaret O. Hall, Christian T. Hayes, Charles W. Martin, Ashley M. Mcdonald, Delbert L. Smee
Drift Macroalgal Distribution In Northern Gulf Of Mexico Seagrass Meadows, Kelly M. Correia, Scott B. Alford, Benjamin A. Belgrad, Kelly M. Darnell, M. Zachary Darnell, Bradley T. Furman, Margaret O. Hall, Christian T. Hayes, Charles W. Martin, Ashley M. Mcdonald, Delbert L. Smee
Faculty Publications
Drift macroalgae, often found in clumps or mats adjacent to or within seagrass beds, can increase the value of seagrass beds as habitat for nekton via added food resources and structural complexity. But, as algal biomass increases, it can also decrease light availability, inhibit faunal movements, smother benthic communities, and contribute to hypoxia, all of which can reduce nekton abundance. We quantified the abundance and distribution of drift macroalgae within seagrass meadows dominated by turtle grass Thalassia testudinum across the northern Gulf of Mexico and compared seagrass characteristics to macroalgal biomass and distribution. Drift macroalgae were most abundant in areas …
Whole Genome Association Study Of The Plasma Metabolome Identifies Metabolites Linked To Cardiometabolic Disease In Black Individuals, Usman A. Tahir, Daniel H. Katz, Julian Avila-Pachecho, Alexander G. Bick, Akhil Pampana, Jeremy M. Robbins, Zhi Yu, Zsu-Zsu Chen, Mark D. Benson, Daniel E. Cruz, Debby Ngo, Shuliang Deng, Xu Shi, Shuning Zheng, Aaron S. Eisman, Laurie Farrell, Michael E. Hall, Adolfo Correa, Russell P. Tracy, Peter Durda, Mark A. Sarzynski Ph.D., Faha, Facsm, Et. Al.
Whole Genome Association Study Of The Plasma Metabolome Identifies Metabolites Linked To Cardiometabolic Disease In Black Individuals, Usman A. Tahir, Daniel H. Katz, Julian Avila-Pachecho, Alexander G. Bick, Akhil Pampana, Jeremy M. Robbins, Zhi Yu, Zsu-Zsu Chen, Mark D. Benson, Daniel E. Cruz, Debby Ngo, Shuliang Deng, Xu Shi, Shuning Zheng, Aaron S. Eisman, Laurie Farrell, Michael E. Hall, Adolfo Correa, Russell P. Tracy, Peter Durda, Mark A. Sarzynski Ph.D., Faha, Facsm, Et. Al.
Faculty Publications
Integrating genetic information with metabolomics has provided new insights into genes affecting human metabolism. However, gene-metabolite integration has been primarily studied in individuals of European Ancestry, limiting the opportunity to leverage genomic diversity for discovery. In addition, these analyses have principally involved known metabolites, with the majority of the profiled peaks left unannotated. Here, we perform a whole genome association study of 2,291 metabolite peaks (known and unknown features) in 2,466 Black individuals from the Jackson Heart Study. We identify 519 locus-metabolite associations for 427 metabolite peaks and validate our findings in two multi-ethnic cohorts. A significant proportion of these …
Snapping Shrimp Have Helmets That Protect Their Brains By Dampening Shock Waves, Alexandra C.N. Kingston, Sarah A. Woodin, David S. Wethey, Daniel Isaac Speiser
Snapping Shrimp Have Helmets That Protect Their Brains By Dampening Shock Waves, Alexandra C.N. Kingston, Sarah A. Woodin, David S. Wethey, Daniel Isaac Speiser
Faculty Publications
Shock waves are supersonic high-amplitude pressure waves that cause barotrauma when they transfer kinetic energy to the tissues of animals.1, 2, 3, 4 Snapping shrimp (Alpheidae) produce shock waves and are exposed to them frequently, so we asked if these animals have evolved mechanisms of physical protection against them. Snapping shrimp generate shock waves by closing their snapping claws rapidly enough to form cavitation bubbles that release energy as an audible “snap” and a shock wave when they collapse.5, 6, 7, 8 We tested if snapping shrimp are protected from shock waves by a helmet-like extension of their exoskeleton termed …
Understanding Across The Senses: Cross-Modal Studies Of Cognition In Cetaceans, Jason N. Bruck, Adam A. Pack
Understanding Across The Senses: Cross-Modal Studies Of Cognition In Cetaceans, Jason N. Bruck, Adam A. Pack
Faculty Publications
Cross-modal approaches to the study of sensory perception, social recognition, cognition, and mental representation have proved fruitful in humans as well as in a variety of other species including toothed whales in revealing equivalencies that suggest that different sensory stimuli associated with objects or individuals may effectively evoke mental representations that are, respectively, object based or individual based. Building on established findings of structural equivalence in the form of spontaneous recognition of complex shapes across the modalities of echolocation and vision and behavior favoring identity echoic–visual cross-modal relationships over associative echoic–visual cross-modal relationships, examinations of transitive inference equivalencies from initially …
All Is Perception, Robert Friedman
All Is Perception, Robert Friedman
Faculty Publications
This editorial addresses the universality and importance of the science of perception. In particular, recently published studies in this journal illustrate the natural variations in perception. These articles are a reminder of perception as a natural process with inherent variations and that any two individuals are not guaranteed to form the same representation of an object, regardless of whether it originates from the senses or not. Since perception is a foundation for higher cognition, it also has an immense influence on studies of humanity and interpretations of natural processes.
Integrated Modeling Of Dynamic Marsh Feedbacks And Evolution Under Sea-Level Rise In A Mesotidal Estuary (Plum Island, Ma, Usa), Karim Alizad, James T. Morris, Matthew V. Bilskie, Davina L. Passeri, Scott C. Hagen
Integrated Modeling Of Dynamic Marsh Feedbacks And Evolution Under Sea-Level Rise In A Mesotidal Estuary (Plum Island, Ma, Usa), Karim Alizad, James T. Morris, Matthew V. Bilskie, Davina L. Passeri, Scott C. Hagen
Faculty Publications
Around the world, wetland vulnerability to sea-level rise (SLR) depends on different factors including tidal regimes, topography, creeks and estuary geometry, sediment availability, vegetation type, etc. The Plum Island estuary (PIE) is a mesotidal wetland system on the east coast of the United States. This research applied a newly updated Hydro-MEM (integrated hydrodynamic-marsh) model to assess the impacts of intermediate-low (50 cm), intermediate (1 m), and intermediate-high (1.5 m) SLR on marsh evolution by the year 2100. Model advancements include capturing vegetation change, inorganic and below and aboveground organic matter portion of marsh platform accretion, and mudflat creation. Although the …
Invited Perspective: Existing Rules For Disinfection By-Products Are Good, But They Are Not Enough, Susan D. Richardson
Invited Perspective: Existing Rules For Disinfection By-Products Are Good, But They Are Not Enough, Susan D. Richardson
Faculty Publications
No abstract provided.
Sorption Of Cellulases In Biofilm Enhances Cellulose Degradation By Bacillus Subtilis, Yijie Deng, Shiao Y. Wang
Sorption Of Cellulases In Biofilm Enhances Cellulose Degradation By Bacillus Subtilis, Yijie Deng, Shiao Y. Wang
Faculty Publications
Biofilm commonly forms on the surfaces of cellulosic biomass but its roles in cellulose degradation remain largely unexplored. We used Bacillus subtilis to study possible mechanisms and the contributions of two major biofilm components, extracellular polysaccharides (EPS) and TasA protein, to submerged biofilm formation on cellulose and its degradation. We found that biofilm produced by B. subtilis is able to absorb exogenous cellulase added to the culture medium and also retain self-produced cellulase within the biofilm matrix. The bacteria that produced more biofilm degraded more cellulose compared to strains that produced less biofilm. Knockout strains that lacked both EPS and …
Systematic Overexpression Of Genes Encoded By Mycobacteriophage Waterfoul Reveals Novel Inhibitors Of Mycobacterial Growth, Danielle Heller, Isabel Amaya, Aleem Mohamed, Ilzat Ali, Dmitri Mavrodi, Padraig Deighan, Viknesh Sivanathan
Systematic Overexpression Of Genes Encoded By Mycobacteriophage Waterfoul Reveals Novel Inhibitors Of Mycobacterial Growth, Danielle Heller, Isabel Amaya, Aleem Mohamed, Ilzat Ali, Dmitri Mavrodi, Padraig Deighan, Viknesh Sivanathan
Faculty Publications
Bacteriophages represent an enormous reservoir of novel genes, many of which are unrelated to existing entries in public databases and cannot be assigned a predicted function. Characterization of these genes can provide important insights into the intricacies of phage–host interactions and may offer new strategies to manipulate bacterial growth and behavior. Overexpression is a useful tool in the study of gene-mediated effects, and we describe here the construction of a plasmid-based overexpression library of a complete set of genes for Waterfoul, a mycobacteriophage closely related to those infecting clinically important strains of Mycobacterium tuberculosis and/or Mycobacterium abscessus. The arrayed …
Optimising Predictive Models To Prioritise Viral Discovery In Zoonotic Reservoirs, Daniel J. Becker, Gregory F. Albery, Anna R. Sjodin, Timothée Poisot, Laura M. Bergner, Binqi Chen, Lily E. Cohen, Tad Dallas, Evan A. Eskew, Anna C. Fagre, Maxwell J. Farrell, Sarah Guth, Barbara A. Han, Nancy B. Simmons, Michiel Stock, Emma C. Teeling, Colin J. Carlson
Optimising Predictive Models To Prioritise Viral Discovery In Zoonotic Reservoirs, Daniel J. Becker, Gregory F. Albery, Anna R. Sjodin, Timothée Poisot, Laura M. Bergner, Binqi Chen, Lily E. Cohen, Tad Dallas, Evan A. Eskew, Anna C. Fagre, Maxwell J. Farrell, Sarah Guth, Barbara A. Han, Nancy B. Simmons, Michiel Stock, Emma C. Teeling, Colin J. Carlson
Faculty Publications
Despite the global investment in One Health disease surveillance, it remains difficult and costly to identify and monitor the wildlife reservoirs of novel zoonotic viruses. Statistical models can guide sampling target prioritisation, but the predictions from any given model might be highly uncertain; moreover, systematic model validation is rare, and the drivers of model performance are consequently under-documented. Here, we use the bat hosts of betacoronaviruses as a case study for the data-driven process of comparing and validating predictive models of probable reservoir hosts. In early 2020, we generated an ensemble of eight statistical models that predicted host–virus associations and …
How The “Blueprint” For Agriculture In Adventist Education Can Be Relevant In The 21st Century, Katherine Koudele
How The “Blueprint” For Agriculture In Adventist Education Can Be Relevant In The 21st Century, Katherine Koudele
Faculty Publications
No abstract provided.
Mir-489 Confines Uncontrolled Estrogen Signaling Through A Negative Feedback Mechanism And Regulates Tamoxifen Resistance In Breast Cancer, Mithil Soni, Ozge Saatci, Gourab Gupta, Yogin Patel, Manikanda Raja Keerthi Raja, Jie Li, Xinfeng Liu, Peisheng Xu Ph.D., Hongjun Wang, Daping Fan, Ozgur Sahin, Hexin Chen
Mir-489 Confines Uncontrolled Estrogen Signaling Through A Negative Feedback Mechanism And Regulates Tamoxifen Resistance In Breast Cancer, Mithil Soni, Ozge Saatci, Gourab Gupta, Yogin Patel, Manikanda Raja Keerthi Raja, Jie Li, Xinfeng Liu, Peisheng Xu Ph.D., Hongjun Wang, Daping Fan, Ozgur Sahin, Hexin Chen
Faculty Publications
Approximately 75% of diagnosed breast cancer tumors are estrogen-receptor-positive tumors and are associated with a better prognosis due to response to hormonal therapies. However, around 40% of patients relapse after hormonal therapies. Genomic analysis of gene expression profiles in primary breast cancers and tamoxifen-resistant cell lines suggested the potential role of miR-489 in the regulation of estrogen signaling and development of tamoxifen resistance. Our in vitro analysis showed that loss of miR-489 expression promoted tamoxifen resistance, while overexpression of miR-489 in tamoxifen-resistant cells restored tamoxifen sensitivity. Mechanistically, we found that miR-489 is an estrogen-regulated miRNA that negatively regulates estrogen receptor …