Life Sciences Commons^™

Depth-Discrete Metagenomics Reveals The Roles Of Microbes In Biogeochemical Cycling In The Tropical Freshwater Lake Tanganyika, Patricia Q. Tran, Samantha C. Bachand, Peter B. Mcintyre, Benjamin M. Kraemer, Yvonne Vadeboncoeur, Ismael A. Kimirei, Rashid Tamatamah, Katherine D. Mcmahon, Karthik Anantharaman

Biological Sciences Faculty Publications

Lake Tanganyika (LT) is the largest tropical freshwater lake, and the largest body of anoxic freshwater on Earth's surface. LT's mixed oxygenated surface waters float atop a permanently anoxic layer and host rich animal biodiversity. However, little is known about microorganisms inhabiting LT's 1470 meter deep water column and their contributions to nutrient cycling, which affect ecosystem-level function and productivity. Here, we applied genome-resolved metagenomics and environmental analyses to link specific taxa to key biogeochemical processes across a vertical depth gradient in LT. We reconstructed 523 unique metagenome-assembled genomes (MAGs) from 34 bacterial and archaeal phyla, including many rarely observed …

Public Discussion Of Anthrax On Twitter: Using Machine Learning To Identify Relevant Topics And Events, Michele Miller, William Lee Romine, Terry L. Oroszi

Biological Sciences Faculty Publications

Background: Social media allows researchers to study opinions and reactions to events in real time. One area needing more study is anthrax-related events. A computational framework that utilizes machine learning techniques was created to collect tweets discussing anthrax, further categorize them as relevant by the month of data collection, and detect discussions on anthrax-related events. Objective: The objective of this study was to detect discussions on anthrax-related events and to determine the relevance of thetweets and topics of discussion over 12 months of data collection. Methods: This is an infoveillance study, using tweets in English containing the keyword “Anthrax” and …

A Novel Thin-Film Technique To Improve Accuracy Of Fluorescence-Based Estimates For Periphytic Biofilms, Leon Katona, Yvonne Vadeboncoeur, Christopher T. Nietch, Katie Hossler

Biological Sciences Faculty Publications

Recent studies suggest that photophysiological parameters for intact substrates with depth (e.g., periphytic biofilms, microphytobenthos) are overestimated by pulse-amplitude modulated (PAM) fluorometry. This overestimation results from depth-integration effects, following the activation of deeper photosynthesizing layers by an attenuated light signal. To mitigate this error, we propose a novel slide-based thin-film technique in which fluorescence is measured on a vertically representative subsample of the biofilm, spread evenly on a microscope slide. We compared bias and precision for photosynthetic parameters estimated through conventional PAM fluorometry on intact biofilms and through our novel slide-based technique, both theoretically and empirically. Numerical simulations confirmed the …

Psychological Impact Of Novel Coronavirus Covid-19 Across The Globe-A Review, Sadaf Shaheen, Iram Asim, Rida Zainab, Humaira Yasmeen

Journal of Bioresource Management

The recent outbreaks of novel coronavirus disease have unprecedent impact on mental health of patients, front-line healthcare workers and local population. However, the impact is not fully documented. This review explores stress-driven factors, stress-vulnerable groups and stress management interventions. Repetitive exposure to mass media and inappropriate health protective measures has heightened stress responses. Fear of not getting recovered from COVID-19 and disaffection has profound impact of infected individuals and their families. They may experience fear, anxiety, anger, sleep deprives and anorexia which may weakens their immune system thus making them vulnerable to COVID-19. The COVID-19 pandemic has underscored potential gaps …

Influence Of Decay Fungi On Selected Anatomical Properties Of Aningeria Robusta A. Chev. Wood, Olayiwola Olaleye Ajala, Funke Grace Adebawo, Emmanuel Adekanye Adelusi, Olaoluwa Adeniyi Adegoke

Journal of Bioresource Management

Due to population explosion, the forest of Nigeria like most tropical forest is over exploited for choice traditional species. Therefore, need to investigate species that can substitute the species arise. Five trees of Aningeria robusta were harvested from Cocoa Research Institute of Nigeria. Bolts of 50cm length were obtained at the base, middle and the top; radial strips also obtained for innerwood, middlewood and outerwood. Ten test specimens of dimension 12mm x 15mm x 25mm were obtained per zone. N-hexane heartwood extracts of a 30 year old Gliricidia sepium diluted with kerosene using volume by volume method into 0%, 25%, …

Effect Of Diabetes Mellitus And Anti-Diabetic Drugs On Bone Health-A Review, Farah Deeba, Sidra Younis, Nida Qureshi, Tahmina Mustafa, Nadia Iqbal, Saira Hussain

Journal of Bioresource Management

Osteoporosis and diabetes mellitus (DM) are widespread diseases and have a significant health burden. Type-1 diabetes mellitus (T1DM) and Type-2 diabetes mellitus (T2DM) are associated with an increased bone fracture. In T1DM, the increased risk of bone fracture is associated with low bone mass. In patients with T2DM, the risk of fracture of the bone is increased due to low quality of bone, despite increased bone mineral density (BMD). In type 2 diabetic patients, bone fragility depends on the quality of bone instead of a reduction in bone mass. Thiazolidinediones (TZD) cause differentiation of adipocytes and inhibit differentiation of osteoblast …

Phenotypic Plasticity And Parental Effect On Rearing Of Two Diverse Habitat Environment For Laboratory Reared Sympetrum Meridionale, Imane Halassi, Ali Elafri, Ismahan Halassi, Hichem Amari, Moussa Houhamdi

Journal of Bioresource Management

Laboratory observations on rearing experiment of Odonata serve to answer many evolutionary and ecological questions. In order to evidences the role of species parental habitat provenience in the development behaviour of their offspring, we surveyed several life history traits of two rearing populations of Sympetrum meridionale (Anisoptera: Sympetrinae), coming from two different habitats across north-eastern Algeria. The first one is a RAMSAR wetland called ‘Mekhada’ (a perennial water body), and the second one is a temporary pond located at “Maouna” Mountain (1400 m altitude). Overall, the development patterns of the two populations of dragonflies vary with the type of habitat …

Heat Shock Proteins: Classification, Functions And Expressions In Plants During Environmental Stresses., Sara Khan, Raheela Jabeen, Farah Deeba, Ummara Waheed, Plosha Khanum, Nadia Iqbal

Journal of Bioresource Management

HSPs proteins are found mostly in every cell from prokaryotes to eukaryotes. HSPs have been comprehensively studied in animals and humans. Recently their role in plants was thoroughly studied. HSPs were described as a result of heat shock conditions, but now get activate by various stresses like Ultraviolet light, cold, wound healing, drought, salinity and pathogenic infections (Lindquist et al., 1988). The term “heat shock protein” is now incorrect because HSPs are not expressed only under high temperature, also expressed under other stresses. HSPs are essential in maintaining balanced cell internal conditions under optimum and damaged growth conditions about in …

Assessment Of Available Manganese In Milk By Using Fodders Grown In Long-Term Wastewater Irrigated Soil, Mudasra Munir, Kafeel Ahmad, Zafar Iqbal Khan, Asmat Zahra, Asma Ashfaq, Ifra Saleem Malik, Mumtaz Akhtar, Humayun Bashir, Muhammad Umar Farooq Awan

Journal of Bioresource Management

Heavy metals are considered as most important contaminations due to industrialization of countries and an influence on its existence in soil, plant and milk. A study was carried out to check manganese content in soil, forage and milk at three sites of city Jhang, Punjab, Pakistan. All samples (milk, soil, water, fodder plants and ground water) were analyzed for manganese by Atomic Absorption Spectrophotometer. Different health indices were also studied to check Mn flow in food chain. Level of Mn in samples was found within acceptable limits. Manganese level was higher in soil samples collected from Site-III than other sites. …

Arsenic And Cadmium Risk Assessment In A Domestic Wastewater Irrigated Area Using Samples Of Water, Soil And Forages As Indicators, Zafar Iqbal Khan, Kafeel Ahmad, Musarrat Batool, Ifra Saleem Malik, Humayun Bashir, Mudasra Munir, Asma Ashfaq, Pervaiz Akhter, Sonaina Nazar, Mubeen Akhtar, Mumtaz Akhtar, Muhammad Nadeem, Muhammad Umar Farooq Awan

Journal of Bioresource Management

The recent research was performed to investigate the toxicity of As and Cd in suburban area of Sargodha, Punjab, Pakistan. Water, soil and forage samples were collected for this purpose in summer and winter season and analysis was done via wet digestion to determine the concentration of selected heavy metals. The mean concentration of As and Cd in water was found above the permissible maximum limit. Mean concentration of Cd in soil and forages was lower than the allowed limit whereas As which was higher than the PML in forages. So, continuous use of domestic wastewater for irrigation purpose should …

Agrobacterium Mediated Transformation Optimizations For Sugarcane (Saccharum Officinarum L.) Cultivar Spf-234 With Direct Organogenesis, Muhammad Nawaz, Naeem Iqbal, Rabia Hameed, Mehwish Mehwish, Shakra Jamil

Journal of Bioresource Management

Sugarcane (Saccharum officinarum L.) is the most important food and energy crop worldwide. In the present study, an efficient Agrobacterium mediated transformation and regeneration system for sugarcane cultivar SPF-234 was established. Agrobacterium tumefaciens strains EHA101and LBA4404 using vector pIG121 Hm, having GUS, HPTII and NPTII genes were used. Polymerase chain reaction (PCR) and histochemical assays confirmed the GUS gene expression. A 620 bp fragment from GUS positive plants was amplified. The GUS expressing putative transformants were 35% of the total plants formed under 30 minute immersion time and 72 hr of incubation period. The co-cultivation media having 60 …

Profile Of Antimicrobial Susceptibility From Cattles’S Milk Isolates Suffering From Mastitis In District Lahore, Muhammad Imran, Iqra Rehman, Abdul Qayyum Khan Sulehria, Yasser Mustafa Butt, Abdul Majid Khan, Azizah Ziauddin

Journal of Bioresource Management

Mastitis is highly prevalent infection in cattle causing cost-effective loss in dairy milk production. Escherichia coli is the most frequently isolated bacteria causing mastitis worldwide. The current study was performed to investigate the mastitis prevalence and effect of different antibiotics against pathogens causing it. In sum, 216 milk samples were collected randomly including 108 each from both cows and buffaloes. These samples were subjected to Surf Field Mastitis Test for prevalence of mastitis that found 18.50% and 23.14% in buffaloes and cows respectively. Mastitis was more prevalent both in buffaloes and cows at the age of 9-10 years that was …

Endoplasmic Reticulum Stress Induces Axon Initial Segment Shortening In Cortical Neuron Culture, Jennae Shelby, Ryan B. Griggs, Josef Steinbrunner, Keiichiro Susuki

Medical Student Research Symposium Abstracts and Posters

The axon initial segment (AIS) is a domain located between the neuronal soma and axon responsible for action-potential initiation. Because even small changes in its length or location alter neuronal excitability and function, the AIS is a key structure for neurodegenerative pathophysiology. AIS shortening is seen in several neurodegenerative conditions such as traumatic brain injury, Alzheimer’s disease, neuropathic pain, multiple sclerosis, and diabetic encephalopathy. Diabetic encephalopathy refers to mild cognitive impairment or dementia often experienced in patients with type 2 diabetes. Although patients with type 2 diabetes are 1.73 times more likely to develop dementia, there is currently no course …

Placental Hypoxia-Inducible Factor 1 Alpha In Early-Onset Preeclampsia As A Predictor Of Future Risk In Maternal And Fetal Health, Julie Slyby, Bryce Linkous, Sarah Scott, Chandni Chandiramani, Amy Hwang, Danielle Spanbauer, Melissa R. Kaufman, Traci Rackett, Kailey Nolan, Emily Stone, Rose A. Maxwell, David N. Dhanraj, Thomas L. Brown

Medical Student Research Symposium Abstracts and Posters

Preeclampsia is a life-threatening, pregnancy-associated disorder characterized by the rapid development of hypertension with renal dysfunction. While preeclampsia generally occurs later in pregnancy, early-onset preeclampsia (EOPE) can occur much earlier and is usually more devastating. Early-onset preeclampsia is also associated with an increased risk of maternal cardiovascular and metabolic disease in mothers later in life and neurocognitive dysfunction in their offspring. EOPE is strongly associated with abnormal placental development and fetal growth restriction during pregnancy.

Phytochemical Screening, Antimicrobial Activity Of Gemmotherapeutically White Mulberry (Morus Alba) Leaves, Abu Ul Hassan Faiz, Lariab Zahara Faiz

Journal of Bioresource Management

The present study was designed to find out phytochemical analysis and antimicrobial activity of leaves of Mulberry plant. The phytochemical analysis was performed on quantitative and qualitative basis. The qualitative basis indicated the presence of alkaloids, glycosides, flavonoids, steroids, tannins, saponins and Anthraquinone. The quantitative analysis showed alkaloids (40%), glycosides (20.05%), flavonoids (14%), steroids (3.5%), tannins (11.9%) and saponins (11.5%) and anthraquinone (0.5%) presence. Antimicrobial activity against bacteria has been observed in the leaves of Mulberry (Morus alba) and showed zone of inhibition, Escherichia coli (7±3.3) mm, Staphylococcus aurous (8±3.1), Bacillus subtilis (9±2.5), Pasturella multocida (8±3.1) mm.

Ecology Of Patas Monkey (Erythrocebus Patas) In Buffer Zone Ranges, Old Oyo National Park, Nigeria, Shafiu Kilishi Halidu, Olaoluwa Ayodeji Adebayo, Jude Chikezie, Azeez Olalekan Ibrahim, Olushola Emmanuel Adedeji

Journal of Bioresource Management

The buffer zones of Nigerian protected areas are poorly managed. Patas monkey (Erythrocebus patas) was studied in fact owing to its dearth of information on its ecology and existence in South-West Nigeria National Park. Therefore, it was necessary to examine E. patas spatial distribution and population structure in the Old Oyo National Park buffer zone ranges, situated in South-West Nigeria and as well know its dietary uptake alongside delineating its various activities. Observations were positioned on direct census methods. A total of 60 individuals of E. patas (23 female, 21 male, and 16 young individuals) were sighted within …

The Phytotherapeutic Arsenal In The Guerbes-Sanhadja Wetlands Complex (North East Of Algeria), Belaidi Abdelouahab, Beghami Yassine, Francisco Maria Vázquez, Souilah Nabila, Bendif Hamdi

Journal of Bioresource Management

This study documents indigenous medicinal flora - utilization, and was carried out in the Guerbes-Sanhadja wetland complex, between January 2018 and December 2020. The detailed information was gathered from users of medicinal plants mainly based on semi-structured interviews. A total of 102 plant species distributed in 48 families were found in practice by the natives for fulfilling their daily life requirements. The most frequently cited plants are: Myrtus communis L. (158 citations), Pistacia lentiscus L. (122) and Thymus vulgaris L. (97). Most of the medicinal species listed were herbs (68.93%). The phanerophytes (33.33%) and hemicriptophytes (27.45%) were the principal species …

Challenges And Opportunities In Food Safety-A Review, Iram Asim, Humaira Yasmeen

Journal of Bioresource Management

Food-borne diseases are the group of disorders that are caused by consuming food having microbial existence in it. So safe food handling is to make sure the lessening of detrimental effects in growth to the packaging of food to minimize health issues on consumers which otherwise can lead to large scale disease outburst. This review concludes the findings of the studies on how food is being handled from farm to fork, how airlines are contributing towards the spreading of diseases, how any negligence in any one of the steps can cause havoc to mankind in the light of the recent …

Breeding Ecology And Nest- Site Selection Of Turtle Doves (Streptopelia Turtur) In Three New Orchard Habitats, Thilelli Aitouakli, Ettayib Bensaci

Journal of Bioresource Management

The main aim of our work was to investigate the breeding parameters in three orchard types in Algeria (apple, cherry and nectarine) for better conservation of existing species. A total of 149 active Turtle dove nests were monitored in these man–made agro-systems. Egg laying occurred from early May and continued until mid-August. Egg laying started later in cherry trees and stopped earlier in nectarines. Nest density was higher in apple orchards. Nests were located higher in nectarine. Clutch size was similar among orchard types. Northeast was the dominant orientation in all orchards. Breeding success was higher than that recorded in …

The Wright State – Lake Campus 2020 – 2021 Scholarly Review, Wright State University - Lake Campus

Lake Campus Research Symposium Reports

This report provides a listing of the scholarly endeavors from Lake Campus during the 2020 calendar year, spanning across disciplines.

This document contains the Annual Research Report from 2020 and the Research Symposium Program from 2021.

Impact Of Wastewater And Canal Water Irrigation On The Accumulation Of Copper In Maize And Millet Of Different Districts Of Punjab Pakistan, Ifra Saleem Malik, Zafar Iqbal Khan, Kafeel Ahmad, Humayun Bashir, Asma Ashfaq, Mudasra Munir, Sobia Fiaz

Journal of Bioresource Management

In current work, we examined the absorption of metal Copper in generally grown food crops (Maize & Millet), cultivated in the waste water irrigated different Districts of Punjab, Pakistan. Analyzed samples of Water, Soil, shoot and grain were processed through atomic absorption spectrometric method. Our findings of Copper in water and Shoot were highest for Millet of Sargodha, irrigated with wastewater (1.69 mg/kg and 1.43 mg/kg respectively). In soil and grain samples maximum absorption of Cu was obtained in the waste water irrigated Maize (Sargodha) and Millet (Sheikhupura). Overall, Cu level was within the acceptable parameters set by FAO/WHO (2001). …

Distribution Pattern And Phytosociological Study Of Trees Associated With Agroforestry In Poonch District Of Jammu And Kashmir, India, Javed Manzoor, Mohd Junaid Jazib

Journal of Bioresource Management

The focus of present study was to find the phytosociology, distribution pattern, and diversity of different species of trees associated with traditional agroforestry in the district of Poonch, Jammu and Kashmir, India. Data was collected through quadrat survey method. A total of fifty quadrats of the size (10x10m) each were thrown randomly in agriculture fields. Total 26 tree species belonging to 16 families and 21 genera were encountered in the agricultural fields with Grewia optiva, Pyrus persica and Celtis australis being the tree species in dominance. The most dense species of tree recorded was Grewia optiva with a density value …

Traffic Related Air Pollution Exposure Effect On Circulating White Blood Cell Counts In Healthy Individuals, Anjam Shezadi, Muhammad Shahbaz, Irfan Baboo, Faiza Shakir, Misbah Shoukat, Maryam Anwar, Badra Younis, Rabia Akbar, Amna Benish, Lubna Mumtaz, Zahid Farooq

Journal of Bioresource Management

During this short term study a total of 110 samples were collected from the selected individuals of study area. This study was aimed to count the White blood cells in the blood samples of individuals, who were mostly exposed to exhaust fumes (air pollution), like traffic constables, cooks and shopkeepers. For this purpose blood samples were taken into an evacuee container having anticoagulant Ethylene diamine tetra-acetic acid (EDTA) so to prevent coagulation of blood, for the count of WBCs, heamocyto-meter was used. During the study the body mass index and blood pressure was also measured by digital blood pressure measuring …

Comparative Expression Studies Of Fiber Related Genes In Cotton Spp., Muhammad Nadeem, Nadia Iqbal, Ummara Waheed, Zia Ullah Zia, Muqarrab Ali, Zulqurnain Khan

Journal of Bioresource Management

Cotton fibers are the seed trichomes that are developed around the seed and are used to make clothes and yarn for the textile industry. Expression profiling of cotton fiber genes is very important to estimate the differential gene expression level at different fiber developmental stages. Expression analysis of fiber developing genes are very important to enhance the fiber length of cotton. The expression profiling of three gene families in five stages (0, 5, 10, 15 and 20 DPA) of cotton fiber tissues was carried out through real-time PCR. Expression analysis revealed that transcripts of GA-20 Oxidase, XTH, …

Epidemiology And Risk Factor Analysis Of Fasciolosis In Buffaloes In District Bagh, Azad Kashmir, Pakistan, Sadaf Fayyaz, Muhammad Shahbaz, Irfan Baboo, Shazia Nazir, Misbah Shaukat

Journal of Bioresource Management

Fasciolosis is a cosmopolitan parasitic disorder cause great economic decline in cattle and buffaloes in terms of poor carcasses quality decrease in meat and milk production, malfunctioning of livers and weight loss. This research work was carried out in district Bagh, Azad Jammu and Kashmir, Pakistan, extending from December 2016 to May 2017. During this study 200 fecal sample from Buffaloes (Bablus bubalis) of the study area were collected, it was found that 40 percent fecal samples contain eggs of Fasciola hepatica and 60 percent fecal samples were negative. Liver samples of slaughtered buffaloes were also examined during …

Population Fluctuation And Diurnal Time Budgeting Of White-Headed Duck (Oxyura Leucocephala) During Winter At Garaet Hadj Tahar (Skikda, North East Algerian), Merzoug Seyf Eddine, Abdi Soumia, Bara Mouslim, Houhamdi Moussa

Journal of Bioresource Management

This study was focused on the ecology and behavior of the White-headed Duck (Oxyura leucocephala) at Garaet Hadj Tahar (Guerbes-Sanhadja, North East of Algeria). Sampling was carried out during two wintering seasons (2017-2018 and 2018-2019). High number of this duck was recorded in 2018/19 (350 individuals). We observed two Oxyura population, the first sedentary, and the second, hosted the Garaet during the wintering season. Diurnal time budget was dominated by the comfort activities the sleeping with a rate of 39.13%. Following by swimming (37.76%), feeding (17.59%) grooming (4.58%), courtship ritual (0.56%) and flying (0.38%). The feeding of white-headed …

Genome Based Research In Aquaculture, Somia Liaqat, Mubashar Hussain, Muhammad Faheem Malik, Asifa Aslam

Journal of Bioresource Management

Genome -based technologies are being instigated to manipulate the structure and function of the genome and to identify the genes of interest for genetic modification of economically important species. Genome editing technologies have also been designed for genetic manipulation of aquaculture species to increase production and quality with minimum investment costs. DNA marker technologies are the most widely used genome technologies. DNA fingerprints are used to construct physical maps while genetic maps are based upon meiotic recombination. BAC fingerprinting is the commonly used method for physical mapping. Next- generation sequencers revolutionized science and allowed the de-novo whole genome sequencing. QTL …

Dietary Overlap Between Native And Exotic Fishes Revealed Through Gut Content Analysis At Head Baloki, Punjab, Pakistan, Muhammad Imran, Abdul Majid Khan, Muhammad Tahir Waseem

Journal of Bioresource Management

An imminent threat to indigenous freshwater ichthyofauna is the introduction of alien fishes that can alter the behavior, population dynamics and native community structure. Thus, it is necessary to understand their feeding behaviour to avoid any unwanted incalculable loss. At sampling site, Head Baloki feeding habits both of native (L. calbasu, C. catla, L. rohita and C. mrigala) and alien (H. nobilis, H. molitrix, C. carpio, C. idella, C. auratus, O. aureus, O. niloticus and O. mozambicus …

Spatio-Temporal Variation Patterns Of Bird Community In The Oasis Ecosystem Of The North Of Algerian Sahara, Lasad Chiheb, Bensaci Ettayib, Nouidjem Yassine, Hadjab Ramzi

Journal of Bioresource Management

The spatial and temporal variation patterns of birds were investigated in the Oasis ecosystem of the North of Algeria Sahara. This contribution aimed to investigate the poorly studied bird fauna of Bousaâda oasis. The direct observation method was used for bird counts, adopted only during the breeding period. A total of 53 species of birds from 29 families and 16 orders were assessed in the different habitats of the Oasis (palm, fruit trees and, cultivated crops). The Passeriformes order was the most abundant represented by 35 species and 16 families. The relative abundance and species richness were recorded during our …

Diversity, Ecology And Therapeutic Properties Of The Medicinal Plants In Ziban Region (Algeria), Nouidjem Yassine, Hadjab Ramzi, Khammar Hichem, Merouani Sakina, Bensaci Etayeb

Journal of Bioresource Management

With the aim to assess the floristic population diversity, distribution and therapeutic properties in the Ziban region (Algeria), a survey was conducted along two successive study years in the main area. The objective of this study was to contribute to the knowledge and description of this plant groups with exhaustive inventory spontaneous vegetation. In order to study the dynamics of medicinal plants, we used a quantitative method based essentially on the classic technique of linear surveys and floristic inventory using the minimum area method. The results showed that the floristic procession of medicinal plants is represented by 21 species belonging …