Life Sciences Commons^™

Mhc Class I Expression In Murine Fibroblast And Keratinocyte Cell Lines During The First Twenty-Four Hours Of Infection With Herpes Simplex Virus-1 (Hsv-1), Prasanthi Kumchala

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The hypothesis of this study is: HSV-1 infection of murine fibroblasts and keratinocytes inhibits expression of MHC class I molecules during first 24 hours of infection. IFN-γ pretreatment of fibroblasts protected the cells from virus-induced inhibition of MHC class I expression, but did not protect keratinocytes. Herpesviruses are known for their ability to establish persistent infections. Herpesviruses exert many different ways to suppress host defense mechanisms. One such way is by down regulating expression of the major histocompatibility complex I (MHC I) molecules in infected cells. Epidermal cells such as keratinocytes are the major sites for herpes simplex virus type …

The Effects Of Hsv-1 Challenge On Polarized Murine Macrophages: An In Vitro Model Using The J774a.1 Murine Macrophage Cell Line, Adam Craig Reichard

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In our current study we examined the effects of HSV-1 challenge on J774A.1 macrophages polarized to either a proinflammatory (M1) or anti-inflammatory (M2) phenotype. Polarized J774A.1 macrophages were characterized using CD14-CD86 and SOCS1-SOCS3 expression levels. SOCS proteins are a family of proteins that are capable of inhibiting cytokine-signaling pathways. HSV-1 up regulates expression of SOCS1 protein levels in infected cells, inhibiting the ability of infected cells to produce proinflammatory products (Nowoslawski Akhtar and Benveniste, 2011). This study shows that signals within the microenvironment play a greater role in macrophage polarization, and SOCS1-SOCS3 expression levels, than does HSV-1 challenge. M1 macrophages …

Use Of Phage Display Libraries To Select For B-Cell Receptor-Specific Peptides Of Chronic Lymphocytic Leukemia Cells, Richard M. Chou

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Peptides with high affinity to the B-cell receptor (BCR) fused to a toxin could be an effective therapy for Chronic Lymphocytic Leukemia (CLL) patients. We screened captured BCR of a CLL patient with peptides from 7 and 12-mer phage display libraries, using two strategies. Lymphocytes from two patients diagnosed with CLL expressing two different unmutated VH genes (VH 1-3 and VH4-34, respectively) were used. Membrane BCRs were obtained from patient CLL cells by lysis, identified by western blot, semi-quantified and screened with phage libraries. The first strategy involved using patient VH4-34 BCRs which were captured using goat anti-human IgM to …

Quantitative Analysis Of Glycinergic Neurons Including Ia Inhibitory Interneurons In The Ventral Spinal Cord Using A Bac-Glyt2-Egfp Transgenic Mouse Model, Palak Rajeshkumar Painter

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We are interested in understanding the development of reciprocal inhibition, an important sensory-motor circuit that prevents co-contraction of antagonist muscles during locomotion. This effect is mediated by a subset of glycinergic neurons termed Ia inhibitory interneurons (IaINs). Transgenic mouse models are useful in helping to identify subsets of neurons in developing animals. In this thesis we first wanted to test the BAC-GlyT2-eGFP mice model by measuring GFP expression overlap in neurons with glycine in late-stage embryos (E17.5) and early postnatal animals (P0/P1). Our results suggest more than 98% of glycinergic neurons at these stages also express GFP in GlyT2-EGFP transgenic …

Suppressor Of Cytokine Signaling (Socs) 1 & 3 Expression In Hsv-1- Infected And Interferon-Γ-Treated Neuro-2a Cells, Melinda Jones

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This study examined the effects of HSV-1 infection and IFN-γ treatment on Neuro-2A cells. HSV-1 induces expression of SOCS1 and SOCS3 in infected cells, inhibiting the ability of these cells to produce the pro inflammatory, antiviral cytokine IFN-γ (Nowoslawski and Benveniste, 2011). SOCS1 and SOCS3 levels were determined in IFN-γ-treated cells, virus-infected cells, and cells that were both IFN-γ-treated and virus-infected. Results were compared with untreated, uninfected control cells. Flow cytometry data analysis showed a slight decrease in SOCS1 and SOCS3 protein levels in cells treated with IFN-γ for 6 hours compared to control cells. A significant decrease in SOCS1 …

House Dust Mite Induced Gene Expression And Cytokine Secretion By Human Dermal Fibroblasts, Jananie Rockwood

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House dust mites are a group of mites that are commonly found in homes worldwide. The three most commonly found species of house dust mites in temperate environments in the United States are Dermatophagoides farinae, Dermatophagoides pteronyssinus and Euroglyphus maynei. House dust mite allergens are strongly associated with asthma, perennial rhinitis and atopic dermatitis. Whole dust mite extracts contain both allergen and non-allergen molecules that can influence cell functions in the skin, mucous membranes of the nose and eyes, and epithelial linings of the lungs. Extracts from the three different house dust mite species contain different molecules that induce different …

The Construction Of A Plasmid For Detecting The Pathway Of Arginine Metabolism In Human Macrophages: A Real-Time Assessment Of Macrophage Polarity, Benjamin A. Holmes

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Macrophages are "first responders", innate immune system cells which quickly arrive to a site of infection and injury, consuming cell debris and foreign matter and recruiting other immune system cells to the area. While historically they have been thought to react uniformly to all challenges, the discovery of toll-like receptors has shown that macrophages actually work closely with the adaptive immune system in fine-tuning the immune response. Furthermore, it has recently been discovered that macrophages can become polarized to one of two subtypes-M1 or M2.

M1 macrophages are efficient producers of reactive oxygen species, nitrogen intermediates, and inflammatory cytokines. They …

Trading Resistance For Vigor: A Potential Mechanism For Invasion By The Asian Grass Microstegium Vimineum, Matthew Dickinson

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The Evolution of Increased Competitive Ability (EICA) hypothesis predicts that subsequent to introduction, non-native plants escape enemies and selection favors genotypes that invest more in growth and reproduction and less in resistance. Here, I evaluated if the invasive Asian grass Microstegium vimineum has developed decreased resistance in its introduced range of the eastern US, as predicted by the EICA hypothesis. Asian and US genotypes were evaluated for differences in enemy damage, leaf toughness, specific leaf area (SLA), and flowering in a common garden experiment. Leaf damage, SLA, and flower production were greater and leaf toughness lower in US plants. These …

Light-Limited Access To Fructose Alters Metabolic Function And Adipose Tissue Catecholaminergic Activity In Mice, Naima Salem Rodwan

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Consumption of high levels of fructose produces glucose intolerance, sympathetic nervous system activation, and renal dysfunction. A diet high in fructose may play a role in the worldwide epidemic of obesity and diabetes. The aim of this study was to test the hypothesis that time (light/dark) limited access to fructose influences body fat, metabolic function, and adipose tissue catecholaminergic activity in mice. Male C57BL/6 mice were given standard chow and assigned to one of three groups: Control (n=10, water 24h); FL (n=11, 10% fructose solution during 12h light period); and FD (n=10, 10% fructose solution during 12h dark period). Metabolic …

Regulation Of Mitosis By Nuclear Speckle Proteins, Keshia Nicole Torres-Munoz

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Mitosis is an intricate process that is monitored by multiple cell cycle regulator proteins. Errors in mitotic regulation have been linked to many types of cancer. Recently, evidence suggests an indirect regulation of mitosis by nuclear speckle proteins. Nuclear speckles are one of the multiple compartments found in the mammalian cell nucleus. They serve as assembly compartments for premRNA processing factors. Mass spectrometry analysis of purified nuclear speckles revealed 33 novel proteins including Son and TRAP150. The aim of my study was to determine how Son and TRAP150 can directly or indirectly impact mitosis. We and others recently reported that …

The Use Of Forelimb Asymmetry Functional Tests To Determine Motor Recovery With Various Drug Treatments Following Endothelin-Induced Stroke, Kelly Rebecca Leach

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Our laboratory has found increased functional recovery post-stroke with Long Evans rats that received a combination of fluoxetine, simvastatin, and vitamin C. The objectives of this study were to test that treatment and other drug combinations on Sprague Dawley rats, to determine whether Forelimb Asymmetry is a reliable behavioral measure for stroke studies, and to determine the most optimal surgical procedure on Sprague Dawley rats. There were more significant increases in functional recovery observed on the Forelimb Asymmetry than on Montoya Staircase behavioral tests, but there were no significant differences between treatment groups and control. The largest number of rats …

Enhanced Angiotensin Ii-Induced Cardiac And Aortic Remodeling In Ace2 Knockout Mice, Mahmoud Alghamri

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Activation of the renin angiotensin system (RAS) is a well-known driving force, governing the aggravation and progression of CVD and associated target organ damage. Angiotensin (Ang) converting enzyme 2 (ACE2), a new member within the RAS family, was first cloned from the ventricle of patient with heart failure. ACE2 was shown to be upregulated under pathological conditions. We hypothesize that loss of ACE2 negatively affects cardiac function and exacerbates hypertrophic cardiomyopathy and aortic remodeling in response to Ang II. Eight weeks old ACE2 knock out (KO) and wild type (WT) mice were infused with Ang II s.c. (1000 ng/kg/min for …

Study Of Microrna-34a Mediated Post Transcriptional Regulation Of Mdm4, Pooja P. Mandke

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MDM4 is an important negative regulator of the tumor suppressor p53. In normal unstressed cells the activity of p53 is kept under control by MDM4 and its homologue MDM2. MDM4 is said to possess oncogenic potential based on the evidence of its overexpression in many cancers. Until recently it was believed MDM4 is constitutively transcribed; however a decrease in full length MDM4 in response to genotoxic stress was observed paving way for exploring the mechanism responsible for this.

It was observed miR-34a a member of the miR34 family which is a direct transcriptional targets of p53 could have a potential …

Powdery Mildew (Erysiphe Cruciferarum) Affects The Allelopathic And Competitive Abilities Of Invasive Garlic Mustard (Alliaria Petiolata), Andrew Russell Officer

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Garlic mustard (Alliaria petiolata) has been previously found to be significantly affected negatively by powdery mildew (Erysiphe cruciferarum). While we could not significantly corroborate those findings we did find evidence that E. cruciferarum does inhibit A. petiolata's allelopathic and competitive effects which benefits some target neighbor species such as Impatiens capensis and Elymus canadensis. We also found that the inhibition of A. petiolata by E. cruciferarum had negative consequences on another neighboring invasive species (Lonicera maackii) compared to those grown next to uninfected A. petiolata. Acer saccharum, a slow-growing species had no effect between neighbors. Sterilization treatments had variable effects …

Characterization Of Hiv-1 Rev Mutants, Jennifer Lynn Chang

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The HIV Rev protein has the ability to bind tubulin heterodimers and depolymerize microtubules (MTs) in vitro (Watts et al. 2000). These interactions may account for MT defects observed in HIV infected cells or cells that over-express Rev. Watts et al. hypothesized Rev interacts with MTs by a mechanism shared with Kinesin-13 (Kin13) proteins owing to the presence of a shared amino acid sequence. Kin13 proteins are potent MT depolymerizing agents affecting MT behavior during mitosis. To test this hypothesis, point mutations were introduced into Rev substituting amino acids shared with Kin13. In this study, eight mutant Rev proteins (T34A, …

Expressing Human Orai3 In Insect Cells For Pharmacological Studies, Orville R. Bennett

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The Orai3 protein forms a Ca2+ channel with a pharmacological profile distinct from its close relative, the store-operated Ca2+ channel Orai1. Though closely related to Orai1, the function of Orai3 in humans is still unclear. This study attempts to contribute to the body of knowledge by undertaking a pharmacological analysis of Orai3 in insect cells. We describe here the creation of a vector capable of expressing the mammalian Orai3 gene on an insect background. We demonstrate the ability to induce gene expression of Orai3 in these insect cells, and then assess the effectiveness of this system by characterizing the pharmacological …

Examining The Relationship Between Garlic Mustard (Alliaria Petiolata) And European Earthworms, Alexandra M. Zelles

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Our goal was to characterize the interactive feedback between garlic mustard (Alliaria petiolata) and European earthworm species in southwest Ohio. Earthworm community composition, abundance and biomass were compared between 0.1 m² plots of garlic mustard, cut-leaved toothwort (Cardamine concatenate), wild ginger (Asarum canadense), or no plant cover. Exotic earthworms were present in the study site. Earthworm abundance and biomass did not correlate with garlic mustard percent cover. There was a greater density of earthworms in the fall than in the spring. Worm abundance differed between garlic mustard and wild ginger plots and cut-leaved …

Son Maintains Accurate Splicing For A Subset Of Human Pre-Mrnas, Alok Sharma, Michael P. Markey, Keshia Torres-Munoz, Sapna Varia, Madhavi P. Kadakia, Athanasios Bubulya, Paula A. Bubulya

Biochemistry and Molecular Biology Faculty Publications

Serine-arginine-rich (SR) proteins play a key role in alternative pre-mRNA splicing in eukaryotes. We recently showed that a large SR protein called Son has unique repeat motifs that are essential for maintaining the subnuclear organization of pre-mRNA processing factors in nuclear speckles. Motif analysis of Son highlights putative RNA interaction domains that suggest a direct role for Son in pre-mRNA splicing. Here, we used in situ approaches to show that Son localizes to a reporter minigene transcription site, and that RNAi-mediated Son depletion causes exon skipping on reporter transcripts at this transcription site. A genome-wide exon microarray analysis was performed …

Overview Of Contrast Data Mining As A Field And Preview Of An Upcoming Book, Guozhu Dong, James Bailey

Kno.e.sis Publications

This report provides an overview of the field of contrast data mining and its applications, and offers a preview of an upcoming book on the topic. The importance of contrasting is discussed and a brief survey is given covering the following topics: general definitions and terminology for contrast patterns, representative contrast pattern mining algorithms, applications of contrast mining for fundamental data mining tasks such as classification and clustering, applications of contrast mining in bioinformatics, medicine, blog analysis, image analysis and subgroup mining, results on contrast based dataset similarity measure, and on analyzing item interaction in contrast patterns, and open research …

Computing Inconsistency Measure Based On Paraconsistent Semantics, Pascal Hitzler, Yue Ma, Guilin Qi

Computer Science and Engineering Faculty Publications

Measuring inconsistency in knowledge bases has been recognized as an important problem in several research areas. Many methods have been proposed to solve this problem and a main class of them is based on some kind of paraconsistent semantics. However, existing methods suffer from two limitations: (i) they are mostly restricted to propositional knowledge bases; (ii) very few of them discuss computational aspects of computing inconsistency measures. In this article, we try to solve these two limitations by exploring algorithms for computing an inconsistency measure of first-order knowledge bases. After introducing a four-valued semantics for first-order logic, we define an …

The Knowledge-Driven Exploration Of Integrated Biomedical Knowledge Sources Facilitates The Generation Of New Hypotheses, Vinh Nguyen, Olivier Bodenreider, Todd Minning, Amit P. Sheth

Kno.e.sis Publications

Knowledge gained from the scientific literature can complement newly obtained experimental data in helping researchers understand the pathological processes underlying diseases. However, unless the scientific literature and experimental data are semantically integrated, it is generally difficult for scientists to exploit the two sources effectively. We argue that, in addition to the semantic integration of heterogeneous knowledge sources, the usability of the integrated resource by scientists is dependent upon the availability of knowledge visualization and exploration tools. Moreover, the integration techniques must be scalable and the exploration interfaces must be easy to use by bench scientists. The end goal of such …

Demonstration: Secure - Semantics Empowered Rescue Environment, Pratikkumar Desai, Cory Andrew Henson, Pramod Anantharam, Amit P. Sheth

Kno.e.sis Publications

This paper demonstrates a Semantic Web enabled system for collecting and processing sensor data within a rescue environment. The real-time system collects heterogeneous raw sensor data from rescue robots through a wireless sensor network. The raw sensor data is converted to RDF using the Semantic Sensor Network (SSN) ontology and further processed to generate abstractions used for event detection in emergency scenarios.

Demonstration: Real-Time Semantic Analysis Of Sensor Streams, Harshal Patni, Cory Andrew Henson, Michael Cooney, Amit P. Sheth, Krishnaprasad Thirunarayan

Kno.e.sis Publications

The emergence of dynamic information sources – including sensor networks – has led to large streams of real-time data on the Web. Research studies suggest, these dynamic networks have created more data in the last three years than in the entire history of civilization, and this trend will only increase in the coming years [1]. With this coming data explosion, real-time analytics software must either adapt or die [2]. This paper focuses on the task of integrating and analyzing multiple heterogeneous streams of sensor data with the goal of creating meaningful abstractions, or features. These features are then temporally aggregated …

Sempush: Privacy-Aware And Scalable Broadcasting For Semantic Microblogging, Pavan Kapanipathi, Julia Anaya, Alexandre Passant

Kno.e.sis Publications

Users of traditional microblogging platforms such as Twitter face drawbacks in terms of (1) Privacy of status updates as a followee - reaching undesired people (2) Information overload as a follower - receiving uninteresting microposts from followees. In this paper we demonstrate distributed and user-controlled dissemination of microposts using SMOB (semantic microblogging framework) and Semantic Hub (privacy-aware implementation of PuSH3 protocol) . The approach leverages users' Social Graph to dynamically create group of followers who are eligible to receive micropost. The restrictions to create the groups are provided by the followee based on the hastags in the micropost. Both SMOB …

Semantic Annotation And Search For Resources In The Next Generation Web With Sa-Rest, Ajith H. Ranabahu, Amit P. Sheth, Maryam Panahiazar, Sanjaya Wijeratne

Kno.e.sis Publications

SA-REST, the W3C member submission, can be used for supporting a wide variety of Plain Old Semantic HTML (POSH) annotation capabilities on any type of Web resource. Kino framework and tools provide support of capabilities to realize SA-RESTs promised value. These tools include (a) a browser-plugin to support annotation of a Web resource (including services) with respect to an ontology, domain model or vocabulary, (b) an annotation aware indexing engine and (c) faceted search and selection of the Web resources. At one end of the spectrum, we present Kino^E (aka Kino for Enterprise) which uses NCBO formal ontologies and …

A Domain Specific Language For Enterprise Grade Cloud-Mobile Hybrid Applications, Ajith H. Ranabahu, E. Michael Maximilien, Amit P. Sheth, Krishnaprasad Thirunarayan

Kno.e.sis Publications

Cloud computing has changed the technology landscape by offering flexible and economical computing resources to the masses. However, vendor lock-in makes the migration of applications and data across clouds an expensive proposition. The lock-in is especially serious when considering the new technology trend of combining cloud with mobile devices.

In this paper, we present a domain specific language (DSL) that is purposely created for generating hybrid applications spanning across mobile devices as well as computing clouds. We propose a model-driven development process that makes use of a DSL to provide sufficient programming abstractions over both cloud and mobile features. We …

Personalized Filtering Of The Twitter Stream, Pavan Kapanipathi, Fabrizio Orlandi, Amit P. Sheth, Alexandre Passant

Kno.e.sis Publications

With the rapid growth in users on social networks, there is a corresponding increase in user-generated content, in turn resulting in information overload. On Twitter, for example, users tend to receive uninterested information due to their non-overlapping interests from the people whom they follow. In this paper we present a Semantic Web approach to filter public tweets matching interests from personalized user profiles. Our approach includes automatic generation of multi-domain and personalized user profiles, filtering Twitter stream based on the generated profiles and delivering them in real-time. Given that users interests and personalization needs change with time, we also discuss …

Semantic Computing In Real-World: Vertical And Horizontal Application Within Enterprise And On The Web, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Kino: A Generic Document Management System For Biologists Using Sa-Rest And Faceted Search, Ajith Harshana Ranabahu, Priti Parikh, Maryam Panahiazar, Amit P. Sheth

Kno.e.sis Publications

Document management has become an important consideration for the scientific community over the last decade. Human knowledge is central to many scientific domains, thus it is not possible to completely automate the document management process. Managing scientific documents require a semi-automatic approach to overcome issues of large volume, yet support the human participation in the process. In this paper we present Kino, a set of tools that streamline the document management process in life science domains. Kino is integrated with National Center for Biomedical Ontology (NCBO), providing scientists access to quality domain models. Annotated documents are indexed using a faceted …

Transcranial Direct Current Stimulation’S Effect On Novice Versus Experienced Learning, L. M. Bullard, E. S. Browning, Vincent P. Clark, Brian A. Coffman, Christopher M. Garcia, R. E. Jung, A. J. Van Der Merwe, K. M. Paulson, A. A. Vakhtin, C. L. Wootton, Michael Patrick Weisend

Wright State Research Institute Publications

Transcranial direct current stimulation (TDCS) is a non-invasive form of brain stimulation applied via a weak electrical current passed between electrodes on the scalp. In recent studies, TDCS has been shown to improve learning when applied to the prefrontal cortex (e.g., Kincses et al. in Neuropsychologia 42:113–117, 2003; Clark et al. Neuroimage in 2010). The present study examined the effects of TDCS delivered at the beginning of training (novice) or after an hour of training (experienced) on participants’ ability to detect cues indicative of covert threats. Participants completed two 1-h training sessions. During the first 30 min of each training …