Life Sciences Commons^™

Characterization Of The Thermophilic Xlanase Fsa272 From Candidatus Fervidibacter Sacchari Belonging To Glycoside Hydrolase Family Gh10, Nicole Torosian, Jonathan K. Covington, Allison M. Cook, Nancy O. Nou, Jan-Fang Cheng

Undergraduate Research Symposium Posters

Candidatus Fervidibacter sacchari is a novel, facultatively anaerobic, hyperthermophilic bacterium found in terrestrial geothermal springs globally. Its genome encodes 115 putative glycoside hydrolase enzymes that are predicted to hydrolyze glycosidic bonds between carbohydrates. Fsa272, a member of the glycoside hydrolase family 10, was synthesized and cloned into Escherichia coli strain T7 Express. The transformed E. coli was grown with LB broth and ampicillin at 37°C. Fsa272 expression was induced with isopropylthio-beta-galactoside (IPTG), and the lysate was heat purified for 15 minutes at 80° C. The 3,5-dinitrosalicylic acid assay identified xylanase activity with a pH range of 4.5 to 10.5 (pHopt …

Growth Of Pseudocotalpa Giulianii Larvae In Sand From Different Dune Sources, Cosset Hernandez Pena, Mandy Mountain

Undergraduate Research Symposium Posters

Pseudocotalpa giulianii (PSGU) is an endemic species known to inhabit two sand dunes in Nye County, Nevada: Big Dune Recreational Area and Lava Dune. Differences in sand properties between Big Dune and Lava Dune could impact survival and growth of the larvae of P. giulianii. Use of permitted off-road vehicles (ORV) in Big Dune can impact its habitats and cause disturbances to local populations, including the Giuliani Dune Scarab as ORV activity is correlated with changes in dune vegetation. Lava Dune has no permitted ORV activity, however, differences in sand composition, including eroded basalt, have the potential to influence the …

Investigating The Impact Of Dividing Attention On Auditory And Visual Object Memory, Sharica Lee, Alexa Salomon, Laura L.S. Werner, Kevin D. Mohawk, Maggie Mcmullin

Undergraduate Research Symposium Posters

Recently, we found that dividing attention reduced recollection and familiarity for visual objects, but a different pattern emerged for auditory object memory: auditory object recollection was not affected by dividing attention. This could be attributable to differing levels of baseline performance with visual memory far exceeding auditory memory. Thus, we attempted to equate baseline performance in both modalities in order to adequately investigate the previous findings.

Localization Of Ipmk, Braden Sio

Undergraduate Research Symposium Posters

Inositol Polyphosphate Multikinase (IPMK) is a relatively new gene found in mammalian cells. To determine where I should further conduct our research, I localized this gene within HEK-293 cells. For this study, HEK-293 cells are used. These cells are easily cultured and transfected, both of which are needed for this study. IPMK tagged with Green Fluorescent Protein is transfected into our test group. The control group is transfected with only Green Fluorescent Protein. After transfecting the HEK-293 cells, the cells are put under a fluorescent microscope under the GFP setting. In the HEK-293 cells that were transfected with IPMK GFP, …

Teaching How To Recycle Through The Medium Of Virtual Reality, Nathan Kassai

Undergraduate Research Symposium Posters

Students, especially children in elementary and middle school, have difficulty focusing and or absorbing information from their courses. The problem lies in the scarcity of hands-on/interactive elements in classrooms as most lectures contain topics most students would be interested in but are presented in a monotonous way. To properly educate and inspire students to work on improving their academic knowledge, alternative educational mediums must be sought. Such mediums like Virtual and Augmented Reality allow students to interact with virtual objects to learn more about a wide variety of subjects, hence increasing their engagement and enjoyment in any particular topic. The …

The Global Effects Of Climate Change: Detrimental Impacts On The Environment, Ecosystem, Coral Reefs, Human Health/Well-Being, And Global Economy, Lucky Heng

Undergraduate Research Symposium Posters

Despite criticism, scientists have been continuing to find more evidence to prove that the threats on the coral reefs around the world are real. The impact of rising climate temperature, pollution, ocean acidification, etc. has been leading to increasing amounts of mass bleaching and a massive decline in coral reefs in past decades. This research study utilizes a systematic literature review and secondary research to collect, analyze and provide evidence that climate change impacts the ecosystem, and marine life (coral reefs) species on the planet. By addressing the impact of climate change and its significance on the ecosystem and global …

The Stability Of The Speech-To-Song Illusion, Jennifer Hsu, Brooke Booth, Jordyn Karns, Rodica R. Constantine

Undergraduate Research Symposium Posters

The Speech-to-Song (STS) illusion: when a listener is presented with multiple repetitions of a spoken phrase and begins to hear it as increasingly song-like. In the present study, we aim to verify anecdotal evidence that suggests the STS illusion is temporally stable and replicate existing evidence that excerpts transform to song by the third or fourth repetition and perhaps faster upon future encounters.

Drought Levels In Nevada Counties, 2022, Julianna Jovillar, Caitlin J. Saladino, William E. Brown Jr.

Environment

This fact sheet synthesizes data on drought levels within Nevada counties from the National Integrated Drought Information System (NIDIS) in 2022. The information presented in this document focuses on the breakdown of the number of Nevada residents affected by the droughts within each county and the drought experience in each county.

Data Analysis Processes And Techniques For Validation Of Wearable Technology: An Example, Bryson Carrier, James W. Navalta

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 3: Issue 1, Article 10, 2022. With wearable technology growing in popularity and sophistication, there remains a need to determine the validity of these devices by independent observers. Validation studies of wearable technology can involve large amounts of data, with data preparation techniques that are not always clearly established. This can make attempts to reproduce the results difficult and does not allow researchers to gain guidance in how to perform their own analyses if they wanted to perform a similar study. Therefore, this paper details the process that was utilized to prepare and …

The Metabolic Change Of Lipid Species In Stam Mice With Hepatocellular Carcinoma, Devin J. Peart

UNLV Theses, Dissertations, Professional Papers, and Capstones

Primary liver cancer hepatocellular carcinoma (HCC) is the second leading cause of cancer death worldwide. In the US, primary liver cancer is the most rapidly increasing type of cancer due to increases in hepatitis B and C and the continued trend of greater and greater percentages of the population suffering from obesity, diabetes mellitus and metabolic syndrome. The prognosis for this disease is poor, with a 5-year survival rate of 26% as compared to only 2% when the cancer is metastatic. Unfortunately, current strategies for early detection of HCC, including routine CT imaging or alpha-fetoprotein biomarker, are suboptimal and tend …

Markers Of Neuroinflammatory And Degenerative Processes In Professional Athletes With Traumatic Encephalopathy Syndrome, Brooke Conway Kleven

UNLV Theses, Dissertations, Professional Papers, and Capstones

Introduction: The clinical criteria for Traumatic encephalopathy syndrome (ccTES) were developed to improve the diagnosis of Chronic traumatic encephalopathy (CTE). This study aimed to determine whether there was an association between a clinical diagnosis of Traumatic encephalopathy syndrome (TES) and changes in serum biomarkers, balance, neuroimaging, and cognition among athletes in the Professional Athletes Brain Health Study (PABHS).Methods: Of the cohort, 130 professional fighters met age or retirement criteria and went to a consensus conference, with 52 fighters (40%) meeting the criteria for TES. A generalized linear model with generalized estimating equations was utilized to assess the odds of disease …

Characterization Of The Isothermal Titration Calorimetry Single Injection Method Using T4 Polynucleotide Kinase As A Model System For Kinases, Rebecca Chaehee Lim

UNLV Theses, Dissertations, Professional Papers, and Capstones

Kinases are an important class of enzymes involved in the regulation of different cellular processes. The dysfunctional activity, either hyperactivity or inactivity, of kinases has been associated with many types of diseases, making kinases a major therapeutic target. As of 2020, more than 80 kinase inhibitors have been FDA-approved and have revolutionized the treatment for progressive disorders such as cancers and Alzheimer's diseases. However, there is always the possibility of developing severe side effects or resistance to drugs so the search for new therapeutics must continue with efficiency and accuracy.Isothermal titration calorimetry (ITC) is a state-of-the-art technique specialized in detecting …

Dimensionality Of Natural Auditory Scene Perception: A Factor Analysis Study, Margaret A. Mcmullin

UNLV Theses, Dissertations, Professional Papers, and Capstones

Theories of auditory and visual scene analysis suggest the perception of scenes relies on the identification and segregation of objects within it, resembling a detail-oriented processing style, but it is possible that a global-oriented process also occurs while evaluating auditory scenes. There is evidence for global properties that enable rapid recognition of visual scenes, even without recognizing the individual objects comprising the scene. It is our understanding that a similar line of research has not been explored in the auditory domain; therefore, we evaluated the contributions of high-level global and low-level acoustic information to auditory scene perception. A secondary aim …

Taxonomic And Physiological Insights Into Novel Bacterial Class Fervidibacteria, Nancy Nou

UNLV Theses, Dissertations, Professional Papers, and Capstones

Recent studies incorporating cultivation-independent techniques to assess microbial communities, namely metagenomics and single-cell genomics, have pushed the proposed number of bacterial phyla from less than 50 to over 100. One such lineage is the candidate bacterial phylum Fervidibacteria, a strictly thermophilic group that has been identified in terrestrial geothermal springs in North America, Asia, and Antarctica through DNA sequencing. By analyzing 62 medium- and high-quality genomes and through cultivation-dependent experiments, this study serves to set up taxonomy and describe physiology within the taxon. Over the course of this study, we propose Candidatus Fervidibacteria should be reclassified as novel class Fervidibacteria …

Hunter-Gatherers In Context: Hadzabe People And Early Nutrition Transition, Trevor Pollom

UNLV Theses, Dissertations, Professional Papers, and Capstones

The current study utilizes a mixed-methods approach to investigate the processes that influence landcover change and nutrition transitions in the Lake Eyasi Basin area of Northern Tanzania. In doing so, it provides unique insights into the behavior and biology of Hadzabe foragers living in the Yaeda Valley during the early stages of nutrition transition and provides much needed context for scientific literature that has been derived from this region. The current study answers the following questions: 1) How can historical and ethnographic maps, combined with present-day landcover classifications, inform our understanding of the people(s), spaces, and places of Lake Eyasi? …

Retrospective Varying Coefficient Association Analysis Of Longitudinal Binary Traits, Gang Xu

UNLV Theses, Dissertations, Professional Papers, and Capstones

Many genetic studies contain rich information on longitudinal phenotypes that require powerful analytical tools for optimal analysis. Genetic analysis of longitudinal data that incorporates temporal variation is important for understanding the genetic architecture and biological variation of complex diseases. Most of the existing methods assume that the contribution of genetic variants is constant over time and fails to capture the dynamic pattern of disease progression. However, the relative influence of genetic variants on complex traits fluctuates over time.We developed several tests to fill the gap of analyzing time-varying genetic effects in longitudinal GWAS for binary traits. First, we propose a …

Quantifying The Effect Of Disturbance On Native Mojave Desert Shrubs, Tamara J. Wynne

UNLV Theses, Dissertations, Professional Papers, and Capstones

Disturbance can come in many different forms. In our studies, we looked at the impact of a solar photovoltaic facility on native plants growing inside and outside of the facility, alteration in precipitation (simulated) on four native shrubs and the impact of applying supplemental water as a function of volume and frequency to establish native shrubs such as might occur at restoration sites. Disturbance is becoming a more common phenomenon in many ecosystems throughout the world, increasing the need for studies that quantify the impact at the plant and ecosystem level. Each research project revealed different plant responses, such as …

Calcite Spherulite Formations And Their Controls In Halophilic Bacterial Cultures, Zakaria Jibrin

UNLV Theses, Dissertations, Professional Papers, and Capstones

This study arose from an accidental discovery of calcite spherulites forming on colonies of various halophilic bacteria grown on solid Luria-Bertani medium made containing water from a brine pool in Death Valley, their natural habitat. Further studies with a large spherulite forming bacteria, Pseudoalteromonas haloplanktis, showed that calcite precipitation conditions were the consequence of bacteria using amino acids as a source of carbon and energy, a metabolism that produces NH3 and CO2 waste products. NH3 raises the pH of the medium, turning CO2 into CO32-. Calcium in the natural brine combines with CO32-. The resulting spherulitic calcite precipitation is nano-acicular …

Digitally Predicting Protein Localization And Manipulating Protein Activity In Fluorescence Images Using 4d Reslicing Gan, Yang Jiao, Lingkun Gu, Yingtao Jiang, Mo Weng, Mei Yang

Electrical & Computer Engineering Faculty Research

While multi-channel fluorescence microscopy is a vital imaging method in biological studies, the number of channels that can be imaged simultaneously is limited by technical and hardware limitations such as emission spectra cross-talk. One solution is using deep neural networks to model the localization relationship between two proteins so that the localization of one protein can be digitally predicted. Furthermore, the input and predicted localization implicitly reflect the modeled relationship. Accordingly, observing the response of the prediction via manipulating input localization could provide an informative way to analyze the modeled relationships between the input and the predicted proteins.

The Assembly Of Mammalian Swi/Snfchromatin Remodeling Complexes Is Regulated By Lysine-Methylation Dependent Proteolysis, Pengfei Guo, Nam Hoang, Joseph Sanchez, Elaine H. Zhang, Keshari Rajawasam, Kristiana Trinidad, Hong Sun, Hui Zhang

Chemistry and Biochemistry Faculty Research

The assembly of mammalian SWI/SNF chromatin remodeling complexes is developmentally programed, and loss/mutations of SWI/SNF subunits alter the levels of other components through proteolysis, causing cancers. Here, we show that mouse Lsd1/Kdm1a deletion causes dramatic dissolution of SWI/SNF complexes and that LSD1 demethylates the methylated lysine residues in SMARCC1 and SMARCC2 to preserve the structural integrity of SWI/SNF complexes. The methylated SMARCC1/SMARCC2 are targeted for proteolysis by L3MBTL3 and the CRL4DCAF5 ubiquitin ligase complex. We identify SMARCC1 as the critical target of LSD1 and L3MBTL3 to maintain the pluripotency and self-renewal of embryonic stem cells. L3MBTL3 also regulates SMARCC1/SMARCC2 proteolysis …

The Covid-19 Pandemic And Changes In Children’S Physical Activity In A Rural Us Community: A Mixed Methods Study, Debra K. Kellstedt, Ann M. Essay, Michaela A. Schenkelberg, Marisa S. Rosen, Mary J Von Seggern, Regina Idoate, Gregory J. Welk, Richard R. Rosenkranz, David A. Dzewaltowski

Kinesiology and Nutrition Sciences Faculty Research

Objectives To examine differences in rural community children’s moderate-to-vigorous physical activity (MVPA) and participation in out-of-school activities from fall 2019 to fall 2020 and explore enacted PA opportunity modifications post initial COVID-19 disruption.

Design Mixed methods study using the validated Youth Activity Profile (YAP), administrator reports and stakeholder surveys and semistructured interviews.

Setting Children and community stakeholders from one rural US Great Plains community in the state of Nebraska were recruited.

Participants Third through fifth graders in fall 2019 (n=144) and fall 2020 (n=174) reported MVPA and participation in out-of-school activities using the YAP. School administrators reported weekly physical education …

The Effect Of Varied Recumbent Stepping Conditions On Lower Extremity Muscle Activity, Michael Hoff, Michelle M. Smith, Katie M. Grismer, Lainey M. Studebaker, Caleb A. Colon, Allison Kinney, Kimberly Edginton Bigelow, Kurt Jackson

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 3: Issue 1, Article 9, 2022. The purpose of this study was to measure lower extremity muscle activity during recumbent stepping under varied conditions. We hypothesized that different stepping conditions would lead to significant changes in muscle activity. Fifteen healthy adults (4 men, 11 women; mean age 24.5 ± 7.7 yrs) provided informed consent to participate. During a single session, electromyography (EMG) was used to measure muscle activity of the tibialis anterior (TA), medial gastroc (MG), rectus femoris (RF), and biceps femoris (BF) muscles as a percent of maximal voluntary contraction (%MVC) during …

Wearing Judogi In A Humid Tropical Environment: Effect On Performance And Hydro-Electrolytic Parameters, Simplice Moussouami, Yvon Rock Ghislain Alongo, André Georges Moulongo, Paul Roger Mabounda Kounga, Erode Mabika Nzoumba, Issiako Bio Nigan

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 3: Issue 1, Article 8, 2022. Extremely high heat stress environmental conditions in sub-Saharan Africa influences sports performance. The aim of this study was to assess physical changes and physiological responses associated with wearing judogi during 8 weeks training session in a hot environment. In this quasi-experimental study, trained male judokas (20.06 ± 1.24 years old), were assessed before and after a training session, while either wearing a judogi (experimental group n = 12) or cotton tee shorts (control group n = 12). All athletes completed testing and were evaluated for anthropometric, physiological …

Data Supporting A Saturation Mutagenesis Assay For Tat-Driven Transcription With The Gigaassay, Ronald Benjamin, Christopher J. Giacoletto, Zachary T. Fitzhugh, Danielle Eames, Lindsay Buczek, Xiaogang Wu, Jacklyn Newsome, Mira V. Han, Tony Pearson, Zhi Wei, Atoshi Banerjee, Lancer Brown, Liz J. Valente, Shirley Shen, Hong-Wen Deng, Martin R. Schiller

Life Sciences Faculty Research

The data in this article are associated with the research paper “GigaAssay – an adaptable high-throughput saturation mutagenesis assay". The raw data are sequence reads of HIV-1 Tat cDNA amplified from cellular genomic DNA in a new single-pot saturation mutagenesis assay designated the “GigaAssay”. A bioinformatic pipeline and parameters used to analyze the data. Raw, processed, analyzed, and filtered data are reported. The data is processed to calculate the Tat-driven transcription activity for cells with each possible single amino acid substitution in Tat. This data can be reused to interpret Tat intermolecular interactions and HIV latency. This is one of …

Comparing Three Wearable Accelerometers To Measure Early Activity After Cardiac Surgery, Charles H. Brown, Lisa Yanek, Ryan Healy, Tiffany Tsay, Junrui Di, Lee Goeddel, Daniel Young, Vadim Zipunnikov, Jennifer Schrack, Cardiac Surgery Mobility Working Group

Physical Therapy Faculty Research

Objective:

Wearable activity monitors can provide detailed data on activity after cardiac surgery and discriminate a patient's risk for hospital-based outcomes. However, comparative data for different monitoring approaches, as well as predictive ability over clinical characteristics, are lacking. In addition, data on specific thresholds of activity are needed. The objective of this study was to compare 3 wearable activity monitors and 1 observational mobility scale in discriminating risk for 3 hospital-based outcomes, and to establish clinically relevant step thresholds.

Methods:

Cardiac surgery patients were enrolled between June 2016 and August 2017 in a cohort study. Postoperative activity was measured by …

Seqcode: A Nomenclatural Code For Prokaryotes Described From Sequence Data, Brian P. Hedlund, Maria Chuvochina, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna-Louise Reysenbach, Luis M. Rodriguez-R, Ramon Rossello-Mora, Iain C. Sutcliffe, Stephanus N. Venter, William B. Whitman

Life Sciences Faculty Research

Most prokaryotes are not available as pure cultures and therefore ineligible for naming under the rules and recommendations of the International Code of Nomenclature of Prokaryotes (ICNP). Here we summarize the development of the SeqCode, a code of nomenclature under which genome sequences serve as nomenclatural types. This code enables valid publication of names of prokaryotes based upon isolate genome, metagenome-assembled genome or single-amplified genome sequences. Otherwise, it is similar to the ICNP with regard to the formation of names and rules of priority. It operates through the SeqCode Registry (https://seqco.de/), a registration portal through which names and …

The Effects Of Ladder Training On Sprint And Change Of Direction Performance, Trevor Short, Tina Manos, Justus Ortega, Andrew Peterson, Young Sub Kwon

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 3: Issue 1, Article 7, 2022. Ladder training is a form of multidirectional lower limb plyometric training utilized by coaches and athletes in a variety of sports. The purpose of this study was to examine the effects of ladder training (LT) on sprint (20-m) and change of direction (COD) (L-drill) kinematics. Fourteen NCAA D-2 Basketball players were matched on baseline performance rankings and randomly assigned to a LT (n = 7) or conventional training (CT) (n = 7) group. The LT group performed all the CT exercises with the addition of …

The Utilization Of Crispr/Cas9 In Monogenic Disorders Authors, Shauna M. Mellor

Spectra Undergraduate Research Journal

This paper is a literature review of various scientific research papers, exploring the recent scientific advancement in the field of genetic engineering. The research presented is a foundational tool, building awareness on the implications of CRISPR/ Cas9 technology. CRISPR/ Cas9 was first discovered through the study of bacterial immune systems, fighting against viral infections. Manipulation of the Cas9 protein would eventually lead to target specific, gene-altering medicines for human organisms. CRISPR/ Cas 9 technology has begun to show promise as an effective treatment for certain monogenic disorders. Despite this, time is required before its efficacy as a proven genetic treatment …

Body Composition Of Utah Highway Patrol Officers: No Difference Between Air Displacement Plethysmography And Alternative Tools For Measurement And Prediction., Peter Macgregor, Justin R. Brown, Jacqueline Spoon, L Nathan Thomas

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 3: Issue 1, Article 6, 2022. Different techniques exist for examining body composition. The purpose of this study was to examine differences in body fat percentage as measured by air displacement plethysmography (ADP), body adiposity index (BAI), bioelectrical impedance (BIA), a body mass index conversion equation (BMI_D), and skinfolds (SKF). Twenty-one male Utah Highway Patrol Officers participated in this study (age 35.19 ± 10.32 years, 1.79 ± 0.09 m tall, 92.20 ± 14.56 kg in weight, and 105.52 ± 10.01 cm hip circumference). All measurements were taken during a single visit …

The Local Food Supply, Willingness To Pay And The Sustainability Of An Island Destination, Cathrine Linnes, Jeffrey Thomas Weinland, Giulio Ronzoni, Joseph Lema, Jerome Agrusa

Hospitality Faculty Research

Purpose: The purpose of this study is to examine the trend toward purchasing locally grown food and evaluate if tourists visiting hawai’i are willing to pay more for locally produced foods that are more ecologically sustainable.

Design/methodology/approach: A research questionnaire was developed in order to investigate the attitudes and behaviors of tourists from the continental united states visiting hawai’i in purchasing locally grown food in hawai’i. the final sample includes 454 valid survey responses collected via momentive, a market research services company.

Findings: According to the findings of this study, there are economic prospects to expand the use of locally …