Life Sciences Commons^™

Hiv Pre-Health Case Study, Halmos College Of Arts And Sciences (Hcas)

HCAS Case Competitions

No abstract provided.

The Lli Chronicle Volume 9 Issue 3, Nova Southeastern University

Lifelong Learning Institute Newsletters

No abstract provided.

The Octocoral Fishery In The Southeastern U.S. And Gulf Of Mexico, Mark Chiappone, Paola Espitia, Leanne M. Rutten, Steven Miller

Marine & Environmental Sciences Faculty Articles

Octocorals, also known as gorgonians and soft corals, were previously managed by the U.S. South Atlantic (SAFMC) and Gulf of Mexico (GMFMC) Fishery Management Councils through a joint Coral Fishery Management Plan (FMP). Because octocorals are mostly collected from Florida waters, the Florida Fish and Wildlife Conservation Commission (FWC) is currently tasked with managing octocoral collection, including the monitoring of colony landings, in the Economic Exclusive Zone (EEZ) adjacent to Florida. Collection of 70,000 colonies per year total, which applies to both state and EEZ waters off Florida, is permitted under Rule 68B- 42.006 of the Florida Administrative Code, but …

Hypoplectrus Liberte, A New And Endangered Microendemic Hamlet From Haiti (Teleostei: Serranidae), Benjamin C. Victor, Kenneth W. Marks

Marine & Environmental Sciences Faculty Articles

The hamlets of the genus Hypoplectrus comprise a species flock of about 20 species found on coral reefs of the tropical western Atlantic Ocean, distinguished by complex color patterns and sharing mitochondrial DNA haplotypes within the Caribbean Sea (Gulf of Mexico and Florida-centered species are about 3% divergent in the COI marker). The species show a variety of biogeographic patterns, from widespread common species to relatively rare species limited to small parts of the Greater Caribbean region. We describe here a distinctive striped morph of barred hamlet, apparently limited to Fort-Liberté Bay in northeastern Haiti, as the new species Hypoplectrus …

Impacts Of A Regional, Multi-Year, Multi-Species Coral Disease Outbreak In Southeast Florida, Charles Walton, Nicole K. Hayes, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Globally coral reefs have been declining at alarming rates as a result of anthropogenic stressors, leading to increased frequency and severity of widespread bleaching and disease events. These events are often associated with increased water temperatures due to climate change as well as regional and local stress from nutrient enrichment through runoff and sedimentation from coastal development. In late 2014, a white syndrome disease outbreak was reported off the coast of southeast Florida and was subsequently documented spreading throughout the region. This study examined the regional impacts of the disease event on the southeast Florida stony coral population utilizing stony …

An Additional Nomenclatural Transfer In The Pantropical Genus Myrsine (Primulaceae: Myrsinoideae), John J. Pipoly Iii, Jon M. Ricketson

Marine & Environmental Sciences Faculty Articles

Rapanea pellucidostriata Gilg & Schellenb. is transferred to Myrsine L. as M. pellucidostriata (Gilg & Schellenb.) Pipoly & Ricketson, comb. nov. To our knowledge, this is the last species of Rapanea Aubl. remaining that did not have a name in the genus Myrsine. With the transfer of this species complete, all species of Rapanea and Suttonia A. Rich. have been transferred into Myrsine.

Typification Of The Genus Dicaryum (Verbenaceae), John J. Pipoly Iii, Jon M. Ricketson

Marine & Environmental Sciences Faculty Articles

The genus Dicaryum Willd. ex Roem. & Schult. was described in 1819 and does not have a type species. Two species were described, and one, D. subdentatum Willd. ex Roem. & Schult., is better selected as the type because the other species, D. serrulatum Willd. ex Roem. & Schult., is not a Verbenaceae but rather a Primulaceae-Myrsinoideae and belongs to Geissanthus Hook. f. Given the circumstances, we choose D. subdentatum as the type species of Dicaryum, which is a synonym of Citharexylum ilicifolium Kunth.

The Assemblage Structure And Trophic Ecology Of A Deep-Pelagic Fish Family (Platytroctidae) In The Gulf Of Mexico, Michael Novotny

HCNSO Student Theses and Dissertations

Members of the family Platytroctidae (tubeshoulders) are found throughout the meso- and bathypelagic waters of the World Ocean. Due to the lack of specimens collected globally, this taxon has received little attention, despite recent evidence suggesting its predominance in the bathypelagic biome. Prior to this study, only four species had been reported in the Gulf of Mexico’s (GoM) highly diverse deep-pelagic ecosystem. An extensive meso- and bathypelagic trawl series in the GoM allowed a detailed examination of this family, which included analyses of species composition, abundance, vertical distribution, sex ratios, and trophic ecology. A total of 16 species were collected, …

A Multidisciplinary Approach For Generating Globally Consistent Data On Mesophotic, Deep-Pelagic, And Bathyal Biological Communities, Lucy C. Woodall, Dominic A. Andradi-Brown, Andrew S. Brierley, Malcolm R. Clark, Douglas Connelly, Rob A. Hall, Kerry L. Howell, Veerle A. I. Huvenne, Katrin Linse, Rebecca E. Ross, Paul Snelgrove, Paris V. Stefanoudis, Tracey Sutton, Michelle Taylor, Thomas F. Thornton, Alex D. Rogers

Marine & Environmental Sciences Faculty Articles

Approaches to measuring marine biological parameters remain almost as diverse as the researchers who measure them. However, understanding the patterns of diversity in ocean life over different temporal and geographic scales requires consistent data and information on the potential environmental drivers. As a group of marine scientists from different disciplines, we suggest a formalized, consistent framework of 20 biological, chemical, physical, and socioeconomic parameters that we consider the most important for describing environmental and biological variability. We call our proposed framework the General Ocean Survey and Sampling Iterative Protocol (GOSSIP). We hope that this framework will establish a consistent approach …

Red Fox Genome Assembly Identifies Genomic Regions Associated With Tame And Aggressive Behaviours, Anna V. Kukekova, Jennifer L. Johnson, Xueyan Xiang, Shaohong Feng, Shiping Liu, Halie M. Rando, Anastasiya V. Kharlamova, Yury Herbeck, Natalya A. Serdyukova, Zijun Xiong, Violetta Beklemischeva, Klaus Peter Koepfli, Rimma G. Gulevich, Anastasiya V. Vladimirova, Jessica P. Hekman, Polina L. Perelman, Aleksander S. Graphodatsky, Stephen J. O’Brien, Xu Wang, Andrew G. Clark, Gregory M. Acland, Lyudmila N. Trut, Guojie Zhang

Biology Faculty Articles

Strains of red fox (Vulpes vulpes) with markedly different behavioural phenotypes have been developed in the famous long-term selective breeding programme known as the Russian farm-fox experiment. Here we sequenced and assembled the red fox genome and re-sequenced a subset of foxes from the tame, aggressive and conventional farm-bred populations to identify genomic regions associated with the response to selection for behaviour. Analysis of the re-sequenced genomes identified 103 regions with either significantly decreased heterozygosity in one of the three populations or increased divergence between the populations. A strong positional candidate gene for tame behaviour was highlighted: SorCS1, which encodes …

Environmental Controls On Depositional Patterns Of Isolated Carbonate Platforms, Jeremy M. Kerr

HCNSO Student Theses and Dissertations

This dissertation explores the influence of the environment on the lateral spatial patterning of facies in modern isolated carbonate platforms through six studies. The first study describes the creation of a database of benthic habitat and bathymetric maps derived from multispectral satellite imagery and the field data used calibrate and validate the mapping algorithms. The second study develops and assesses a new approach for remotely-deriving water depth from multispectral satellite imagery without the need for ground-truth information. The third study identifies a criterion for distinguishing between facies belts and mosaics and deploys the criterion to investigate the co-occurrence of these …

Thresholds And Drivers Of Coral Calcification Responses To Climate Change, Niklas Kornder, Bernhard Riegl, Joana Figueiredo

Marine & Environmental Sciences Faculty Articles

Increased temperature and CO₂ levels are considered key drivers of coral reef degradation. However, individual assessments of ecological responses (calcification) to these stressors are often contradicting. To detect underlying drivers of heterogeneity in coral calcification responses, we developed a procedure for the inclusion of stress–effect relationships in ecological meta‐analyses. We applied this technique to a dataset of 294 empirical observations from 62 peer‐reviewed publications testing individual and combined effects of elevated temperature and pCO₂ on coral calcification. Our results show an additive interaction between warming and acidification, which reduces coral calcification by 20% when pCO₂ levels exceed …

Comparison Of Two Ancient Dna Extraction Protocols For Skeletal Remains From Tropical Environments, Maria A. Nieves-Colon, Andrew T. Ozga, William J. Pestle, Andrea Cucina, Vera Tiesler, Travis W. Stanton, Anne C. Stone

Biology Faculty Articles

Objectives

The tropics harbor a large part of the world's biodiversity and have a long history of human habitation. However, paleogenomics research in these climates has been constrained so far by poor ancient DNA yields. Here we compare the performance of two DNA extraction methods on ancient samples of teeth and petrous portions excavated from tropical and semi‐tropical sites in Tanzania, Mexico, and Puerto Rico (N = 12).

Materials and Methods

All samples were extracted twice, built into double‐stranded sequencing libraries, and shotgun sequenced on the Illumina HiSeq 2500. The first extraction protocol, Method D, was previously designed for …

Genomic Analysis Of Acropora Cervicornis Mucus And Sediments In The Florida Keys Tavernier Nursery, Rachel Zimmerman

HCNSO Student Theses and Dissertations

White Band disease has devastated the staghorn coral Acropora cervicornis in recent decades, and it continues to impinge upon restoration efforts. The etiological agent(s) remain unknown as Koch’s postulates have yet to be satisfied, but disease may originate when opportunistic pathogens in the surface mucus layer exploit a stressed host. Using 16s rRNA sequencing, differences in the taxonomic diversity and relative abundances of bacteria within the mucus of A. cervicornis were documented between colonies of the same genotype, genotypes (n=8) categorized as having either high or low WBD susceptibility, and during a transplantation event. A. cervicornis colonies suspended from midwater …

A Comparison Of Benthic Habitats And Faunas Between The Miami Terrace (Proposed Calypso Pipeline Site) And The Pourtales Terrace (Coral Habitat Of Particular Concern), Laura Dell

HCNSO Student Theses and Dissertations

Quantitative photographs of benthic communities at two northern Miami Terrace sites, originally investigated as part of an environmental impact survey in advance of the proposed Calypso pipeline, and two Pourtalès Terrace sites, investigated as part of an exploration of deep-sea coral and sponge ecosystems (DSCEs) within the Pourtalès Terrace Deep-water Coral Habitat Area of Particular Concern (CHAPC), were reanalyzed and compared for similarities and differences. Both terraces are part of an elongated lithified platform that parallels the southeastern Florida coast at depths averaging between 250 and 450 m. Although both sites have similar geological origins and lie under the Florida …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Meta-Analytic Summary Of Parasites And Diseases Of Elasmobranchs Found In Florida Waters, Alexis S. Modzelesky

HCNSO Student Capstones

Elasmobranchs have conservational and commercial importance. There is a need for a more complete understanding of their health, due to their ability to shape trophic webs and their money-making potential with fishers and ecotourists. Sharks have been known to influence the strength of food webs, including reef ecosystems where many fish species are harvested for food. The investigation of pathogenic agents and diseases in elasmobranchs has been biased to favor those natural enemies that inhabit the digestive system and epidermal surfaces. Certain groups of parasites such as cestodes, copepods, and monogeneans, were most often recorded in this study. The bacterial …

Microbial Ecology Of South Florida Surface Waters: Examining The Potential For Anthropogenic Influences, Chase P. Donnelly

HCNSO Student Theses and Dissertations

South Florida contains one of the largest subtropical wetlands in the world, and yet not much is known about the microbes that live in these surface waters. These microbes play an important role in chemical cycling and maintaining good water quality for both human and ecosystem health. The hydrology of Florida’s surface waters is tightly regulated with the use of canal and levee systems run by the US Army Corps of Engineers and The South Florida Water Management District. These canals run through the Everglades, agriculture, and urban environments to control water levels in Lake Okeechobee, the Water Conservation Areas, …

Antipredatory Escape Behaviors Of Two Benthic Ctenophores In South Florida, Peter W. Glynn, Brian Coffman, Jeongran Vanderwoude, Nicolas Martinez, Joshua H. Dominguez, Julie M. Gross, Dorothy-Ellen A. Renegar

Marine & Environmental Sciences Faculty Articles

Benthic ctenophores, members of the family Coeloplanidae (Order Platyctenida, Phylum Ctenophora) are more widespread and abundant in tropical and subtropical marine environments than formerly recognized. Coeloplanid ctenophores are members of the most speciose family of benthic ctenophores, with 33 recognized species of Coeloplana and one species of the genus Vallicula (Mills 1998). The majority of coeloplanids are ectosymbionts of algae and diverse benthic invertebrates (Matsumoto 1999, Alamaru et al. 2015). Hundreds to thousands of individuals can occupy preferred habitats in < 1 m² of substrate patches. Galt (1998) noted Vallicula multiformis inhabiting algae in Hawaii at population densities as high as 10,000 …

Parasitic Indicators Of Foraging Strategies In Wading Birds, Sarah Gumbleton

HCNSO Student Theses and Dissertations

Feeding ecology and trophic interactions of six species of wading birds were explored through a combined analysis of stable isotope profiles and endoparasite communities. Stable isotopes broadly characterize the feeding preferences and geographic information, while parasite communities reflect long-term trends in feeding ecology. Deceased birds were obtained from four South Florida wildlife rehabilitation organizations. Of the 81 birds dissected, 73 contained parasites. Parasites were predominately found within the gastrointestinal tract. Host and range extensions were noted for several parasite taxa. Bird host species had a significant effect on the parasite community (P=0.001) while wildlife center location and maturity status did …

Analytical “Bake-Off” Of Whole Genome Sequencing Quality For The Genome Russia Project Using A Small Cohort For Autoimmune Hepatitis, Daria V. Zhernakova, Sergei Kliver, Nikolay Cherkasov, Gaik Tamazian, Mikhail Rotkevich, Ksenia Krasheninnikova, Igor Evsyukov, Sviatoslav Sidorov, Pavel Dobrynin, Andrey A. Yurchenko, Valentin Shimansky, Irina V. Shcherbakova, Andrey S. Glotov, David L. Valle, Minzhong Tang, Emilia Shin, Kathleen B. Schwarz, Stephen James O'Brien

Biology Faculty Articles

A comparative analysis of whole genome sequencing (WGS) and genotype calling was initiated for ten human genome samples sequenced by St. Petersburg State University Peterhof Sequencing Center and by three commercial sequencing centers outside of Russia. The sequence quality, efficiency of DNA variant and genotype calling were compared with each other and with DNA microarrays for each of ten study subjects. We assessed calling of SNPs, indels, copy number variation, and the speed of WGS throughput promised. Twenty separate QC analyses showed high similarities among the sequence quality and called genotypes. The ten genomes tested by the centers included eight …

Spatiotemporal Change In The Benthic Community Of Southeast Florida, Nicholas P. Jones

HCNSO Student Theses and Dissertations

High-latitude reefs have been postulated as refugia, centers for resilience or the first areas to undergo re-organization under climate change. The Southeast Florida Reef Tract (SEFRT) is a high-latitude reef system (>25 °N) running parallel to the highly urbanized coastline of southeast Florida. With a benthic community comprised of a mixture of coral reef associated assemblages, the SEFRT is towards the northern limit of stony coral cover due to temperature constraints. This study analyzed spatial variations in benthic cover, spatiotemporal changes in the benthic community and the impact of spatial and temporal fluctuations in temperature on benthic cover on …

Presence/Absence And Density Data For Epipelagic Tows Collected During R/V Blazing Seven Cruises Lf2016a And Lf2016b, Northern Gulf Of Mexico From 2016-06-09 To 2016-07-28, Jay R. Rooker, David Wells

DEEPEND Datasets

This dataset reports presence/absence and density data for epipelagic tows collected in the northern Gulf of Mexico during R/V Blazing Seven cruises LF2016A and LF2016B (2016-06-09 to 2016-07-28). Larval fishes were sampled from 48 stations and cruise data were collected at each site including latitude/longitude, date, time, environmental data (temperature, salinity, dissolved oxygen) and Sargassum dry weight. Larval catch data before and after the oil spill will be compared to improve our understanding of the causes of temporal variability as it relates to the Deep-Water Horizon oil spill (DWHOS). Habitat associations of selected taxa (billfishes, tunas, dolphinfishes, flyingfishes) will be …

Effects Of Ocean Warming, Sedimentation, And Parental Genotype On The Post-Settlement Survival And Growth Of Acropora Cervicornis Recruits, Jena Robbins

HCNSO Student Theses and Dissertations

Ocean warming and increased sedimentation from coastal activities are major threats to coral persistence. This study assessed the effects of increased temperature and sedimentation on the survival and growth of Acropora cervicornisrecruits. The potential for adults from different regions and genotypes to confer their offspring with higher or lower tolerance to heat and/or sediment was also determined. Gametes were collected and brought to the laboratory for cross fertilization of different genotypes within the regions collected. Larval rearing and settlement were then performed in the laboratory. Newly settled recruits were reared at 29 and 31°C (current summer temperature for August …

Differential Preservation Of Endogenous Human And Microbial Dna In Dental Calculus And Dentin, Allison E. Mann, Susanna Sabin, Kirsten Ziesemer, Ashild J. Vagene, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar-Garcia, Bruno Frohlich, Mark Aldenderfer, Menno Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis Jr., Johannes Krause, Corinne Hofman, Kirsten I. Bos, Christina Warinner

Biology Faculty Articles

Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections and is a rich source of oral microbiome and host-derived ancient biomolecules. Recently, it has been proposed that dental calculus may provide a more robust environment for DNA preservation than other skeletal remains, but this has not been systematically tested. In this study, shotgun-sequenced data from paired dental calculus and dentin samples from 48 globally distributed individuals are compared using a metagenomic approach. Overall, we find DNA from dental calculus is consistently more abundant and less contaminated than DNA from dentin. The majority of DNA in dental calculus is …

Inventory Of Oceanic Fauna Data Including Species, Weight, And Measurements From R/V Point Sur (Cruise Dp05) In The Gulf Of Mexico From 2017-05-01 To 2017-05-11, April Cook, Tracey Sutton

DEEPEND Datasets

This dataset includes an inventory of Gulf of Mexico oceanic fauna data including species, weight, and measurements collected from R/V Point Sur (Cruise DP05) from 2017-05-01 to 2017-05-11. The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled …

Ongoing Transposon-Mediated Genome Reduction In The Luminous Bacterial Symbionts Of Deep-Sea Ceratioid Anglerfishes, Tory Hendry, Lindsay L. Freed, Dana Fadera, Dante Fenolio, Tracey Sutton, Jose Lopez

Marine & Environmental Sciences Faculty Articles

Diverse marine fish and squid form symbiotic associations with extracellular bioluminescent bacteria. These symbionts are typically free-living bacteria with large genomes, but one known lineage of symbionts has undergone genomic reduction and evolution of host dependence. It is not known why distinct evolutionary trajectories have occurred among different luminous symbionts, and not all known lineages previously had genome sequences available. In order to better understand patterns of evolution across diverse bioluminescent symbionts, we de novo sequenced the genomes of bacteria from a poorly studied interaction, the extracellular symbionts from the “lures” of deep-sea ceratioid anglerfishes. Deep-sea anglerfish symbiont genomes are …

Southeast Florida Large (>2 Meter) Diseased Coral Colony Intervention Summary Report, Brian K. Walker, Alysha Brunelle

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Characterization Of The Bioluminescent Symbionts From Ceratioids Collected In The Gulf Of Mexico, Lindsay L. Freed

HCNSO Student Theses and Dissertations

Anglerfishes are easily one of the most popular deep-sea creatures due to their menacing appearance, extreme sexual dimorphism, parasitic mating approach, and eye catching bioluminescent lure. Unlike most bioluminescent fishes, which intrinsically generate light, female anglerfishes belonging to nine of the 11 families within the suborder Ceratioidei (deep-sea anglerfishes) have developed a symbiotic relationship with bioluminescent bacteria that are housed within the light organs. Previous molecular work had identified symbionts from two anglerfish species as novel and possibly unculturable taxa (Haygood et al., 1992), but nothing more has been revealed about the bioluminecent symbionts of ceratioids. As part of …

Hypocrisy And Corruption: How Disparities In Power Shape The Evolution Of Social Control, Omar T. Eldakar, J. Oliver Kammeyer, Nikhil Nagabandi, Andrew C. Gallup

Biology Faculty Articles

Altruism presents an evolutionary paradox, as altruistic individuals are good for the group yet vulnerable to exploitation by selfish individuals. One mechanism that can effectively curtail selfishness within groups is punishment. Here, we show in an evolutionary game-theoretical model that punishment can effectively evolve and maintain high levels of altruism in the population, yet not all punishment strategies were equally virtuous. Unlike typical models of social evolution, we explicitly altered the extent to which individuals vary in their power over others, such that powerful individuals can more readily punish and escape the punishment of others. Two primary findings emerged. Under …