Life Sciences Commons^™

The Lli Chronicle Volume 7 Number 1, Nova Southeastern University

Lifelong Learning Institute Newsletters

No abstract provided.

Vision And Bioluminescence In The Deep-Sea Benthos, Tamara M. Frank, Sonke Johnsen, Heather D. Bracken-Grissom, Charles Messing, Edith A. Widder

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

During a NOAA-OER funded research cruise, novel collecting techniques were used to collect live, deep-sea benthic animals for studies of bioluminescence and vision. True color images and emission spectra of bioluminescence were obtained from a number of species, including the spiral octocoral Iridogorgia sp., the sea fan Chrysogorgia sp., the sea pen Umbellula sp., and the caridean shrimp Heterocarpusoryx. Electrophysiological studies were conducted on 3 species of decapod crustaceans collected with methods that limited light damage to their photoreceptors. The caridean shrimp, Bathypalaemonella, collected from 1920m, was always found in association with the bioluminescent spiral octocoral Iridogorgia. While …

Axis, Charles Messing

Character and Character State Guides

No abstract provided.

Colony Form, Charles Messing

Character and Character State Guides

No abstract provided.

Branch Tips, Charles Messing

Character and Character State Guides

No abstract provided.

Aperture Shape, Charles Messing

Character and Character State Guides

No abstract provided.

Effect Of Westernization On Oral Health Among College Students Of Udaipur City, India, Piyush Pujara, Neeraj Sharma, Rujul Jayeshkumar Parikh, Maitri Shah, Shachi Parikh, Vivek Vadera, Manpreet Kaur, Isha Makkar, Mayur Parmar, Pratik Rupakar, Shrikant Patel

HPD Articles

BACKGROUND: There is overwhelming evidence that periodontal disease and dental caries affect the majority of populations and that western culture and lifestyle may have a profound influence on oral health, especially in adults. The present study was performed to determine the effect of westernization on the oral health of college students of Udaipur City, Rajasthan. METHODS: A descriptive cross-sectional study was conducted among students attending various professional and non-professional bachelor's degree colleges of Udaipur City, Rajasthan, India, from March 2013 to May 2013. Eight hundred students were selected based on a two-stage random sampling procedure. Westernization was assessed by a …

North American Botanic Garden Strategy For Plant Conservation 2016-2020, Botanic Gardens Conservation International, American Public Gardens Association, Asociacion Mexicana De Jardines, Center For Plant Conservation, Plant Conservation Alliance, Pam Allenstein, Robert Bye, Jennifer Ceska, John Clark, Jenny Cruse-Sanders, Gerard Donnelly, Christopher Dunn, Anne Frances, David Galbraith, Jordan Golubov, Gennadyi Gurman, Kayri Havens, Abby Hird Meyer, Douglas Justice, Edelmira Linares, Maria Magdalena Hernandez, Beatriz Maruri Aguilar, Mike Maunder, Ray Mims, Greg Mueller, Jennifer Ramp Neale, Martin Nicholson, Ari Novy, Susan Pell, John J. Pipoly Iii, Diane Ragone, Peter Raven, Erin Riggs, Kate Sackman, Emiliano Sanchez Martinez, Suzanne Sharrock, Casey Sclar, Paul Smith, Murphy Westwood, Rebecca Wolf, Peter Wyse Jackson

Marine & Environmental Sciences Faculty Reports

No abstract provided.

A Novel Approach Reveals High Zooplankton Standing Stock Deep In The Sea, Alexander Vereshchaka, Galina Abyzova, Anastasia Lunina, Eteri Musaeva, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

In a changing ocean there is a critical need to understand global biogeochemical cycling, particularly regarding carbon. We have made strides in understanding upper ocean dynamics, but the deep ocean interior (> 1000 m) is still largely unknown, despite representing the overwhelming majority of Earth's biosphere. Here we present a method for estimating deep-pelagic zooplankton biomass on an ocean-basin scale. We have made several new discoveries about the Atlantic, which likely apply to the world ocean. First, multivariate analysis showed that depth and Chl were the basic factors affecting the wet biomass of the main plankton groups. Wet biomass of …

Sex On The Reef: Observations Of Coral Spawning In Dry Tortugas National Park, Karen L. Neely, Tracy A. Ziegler

Marine & Environmental Sciences Faculty Articles

In Florida’s remote Dry Tortugas National Park, coral reefs are an important management priority. Reproduction of coral species is difficult to monitor, however, and the reproductive potential of coral colonies at the park has been a matter of concern for several years. Two threatened species, elkhorn coral (Acropora palmata) and pillar coral (Dendrogyra cylindrus), were targeted for observation during their predicted annual spawning event in August 2014. Over a three-night period, both species were observed releasing gametes in near synchrony with observations at other sites in the Florida Keys. That these organisms are capable of being …

Model Suggests Potential For Porites Coral Population Recovery After Removal Of Anthropogenic Disturbance (Luhuitou, Hainan, South China Sea), Meixia Zhao, Bernhard Riegl, Kefu Yu, Qi Shi, Qiaomin Zhang, Guohui Liu, Hongqiang Yang, Hongquiang Yan

Marine & Environmental Sciences Faculty Articles

Population models are important for resource management and can inform about potential trajectories useful for planning purposes, even with incomplete monitoring data. From size frequency data on Luhuitou fringing reef, Hainan, South China Sea, a matrix population model of massive corals (Porites lutea) was developed and trajectories over 100 years under no disturbance and random disturbances were projected. The model reflects a largely open population of Porites lutea, with low local recruitment and preponderance of imported recruitment. Under no further disturbance, the population of Porites lutea will grow and its size structure will change from predominance of …

Mitochondrial Genome Of An Atlantic White Shark (Carcharodon Carcharias), Nicholas J. Marra, Minghui Wang, Qi Sun, Paulina D. Pavinski Bitar, Michael J. Stanhope, Mahmood S. Shivji

Biology Faculty Articles

Here we report the first full mitochondrial genome sequence for a white shark caught in the Atlantic Ocean. The mitochondrial genome is 16,745 bp in length and contains 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a non-coding control region. The base composition of this mtDNA lineage is A: 30.7%, C: 26.9%, G: 13.8%, and T: 28.6%. In concordance with previous population genetic studies, the Atlantic caught individual forms a separate lineage from individuals caught on either side of the Pacific Ocean.

The Our Florida Reefs Coastal Use Survey: An Online Survey To Support Stakeholder Management Recommendations For Southeast Florida, Amanda Rose Costaregni

HCNSO Student Theses and Dissertations

Coral reefs are an important resource world-wide. Unfortunately, coral reef conditions are declining in many areas due to both global and local stressors. The objective of this study was to survey stakeholders in southeast Florida to better understand reef use in the region. Stakeholders spatially identified where and how often they conducted their activities. These data were compiled and analyzed in GIS to determine spatial use patterns. Both location and intensity of use were analyzed to determine which areas may be under greater stress from recreational activities. It was found that reef use was not evenly distributed in the region …

Natural Vs. Anthropogenic Sedimentation: Does Reducing A Local Stressor Increase Coral Resilience To Climate Change?, Francesca Fourney

HCNSO Student Theses and Dissertations

Corals face serious worldwide population declines due to global climate change in combination with direct anthropogenic impacts. Global climate change is difficult to manage locally, but policy makers can regulate the magnitude of local stressors affecting reefs. The objective of this experiment is to investigate if reducing sedimentation will enable reef corals to better endure global climate change. It has been shown that some coral species can handle climate change stress when provided with additional energy resources. Here I tested if the capacity of corals to cope with climate change can be improved when their ability to feed and photosynthesize …

A Comparison Of Infaunal Community Structure Between Pre- And Post Construction Sampling Of Artificial Fdot Rock- Pile Reefs In Broward County, Florida, Joan Lorraine Guerra

HCNSO Student Theses and Dissertations

Artificial reefs (ARs) are generally created with the intention of increasing local fish populations, biodiversity and corresponding habitat productivity, most often in support of commercial and recreational uses (e.g., diving and fishing). Numerous studies have investigated the communities that develop on artificial reefs. By contrast, far less research has focused on the surrounding infaunal communities, which represent critical trophic resources for many species that populate both natural and artificial reefs, and which may be affected both by AR deployment and the organisms that subsequently recruit to them. This study compared infaunal organism abundances at four sites between the inner and …

Genomic Legacy Of The African Cheetah, Acinonyx Jubatus, Pavel Dobrynin, Shiping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergey Kliver, A. Schmidt-Kunzel, Klaus-Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel Garcia-Perez, Marc De Manuel, Ricardo Godinez, Aleksey Komissarov, Alexey Makunin, Vladimir Brukhin, Weilin Qiu, Long Zhou, Fang Li, Jian Yi, Carlos A. Driscoll, Agostinho Antunes, T. K. Oleksyk, Eduardo Eizirik, Polina Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomas Marques-Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O'Brien

Biology Faculty Articles

Background

Patterns of genetic and genomic variance are informative in inferring population history for human, model species and endangered populations.

Results

Here the genome sequence of wild-born African cheetahs reveals extreme genomic depletion in SNV incidence, SNV density, SNVs of coding genes, MHC class I and II genes, and mitochondrial DNA SNVs. Cheetah genomes are on average 95 % homozygous compared to the genomes of the outbred domestic cat (24.08 % homozygous), Virunga Mountain Gorilla (78.12 %), inbred Abyssinian cat (62.63 %), Tasmanian devil, domestic dog and other mammalian species. Demographic estimators impute two ancestral population bottlenecks: one >100,000 years …

Connectivity Of Coastal And Oceanic Ecosystems: Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen

HCNSO Student Theses and Dissertations

The assemblage structure, abundance, biomass, and vertical distribution of juvenile reef fishes in the offshore pelagic habitat of the northern Gulf of Mexico are described as part of the NOAA-supported Offshore Nekton Sampling and Analysis Program. The results presented here are from a 3-month, continuous sampling series in 2011 in which discrete depth strata from 0 to 1500 m were sampled using a 10-m² MOCNESS midwater trawl. This is the first study to examine pelagic juvenile reef fish distributions across the entire oceanic northern Gulf of Mexico seaward of the continental shelf break after the Deepwater Horizon Oil Spill. …

Feeding Ecology Of The Invasive Lionfish (Pterois Spp.) And Comparison With Two Native Species: Schoolmaster Lutjanus Apodus (Walbaum, 1792) And Graysby Cephalopholis Cruentata (Lacepède, 1802), Jesse J. Secord

HCNSO Student Theses and Dissertations

Predator satiation and prey-size preference were determined for locally caught lionfish, schoolmaster, and graysby, all co-occurring predatory fishes in the Florida coral reef ecosystem. Individuals were evaluated by exposing them to wild-caught killifish over a gradient of four size classes (20 mm to 60 mm, in 10 mm increments). Preference trials extended over a 2 hr time period and were filmed to determine the order in which each prey item was consumed. Satiation was evaluated by exposing the predators to an equal number of excess prey items for 24 hrs and evaluating consumed prey weight. Lionfish and schoolmaster showed a …

Faunal Composition And Distribution Of Pelagic Larval And Juvenile Flatfishes (Teleostei: Pleuronectiformes) In The Northern Gulf Of Mexico: Connectivity Between Coastal And Oceanic Epipelagic Ecosystems, Lacey Malarky

HCNSO Student Theses and Dissertations

Pleuronectiformes (flatfishes) occur throughout the global oceans, and have high ecological and commercial importance in some areas. Though much is known regarding life history, abundance, and distribution for the benthic adult stage of flatfish species, much less is known about the pelagic larval phases of flatfishes in the open ocean. Taxonomic uncertainty and limited sampling in the oceanic Gulf of Mexico contribute to data gaps with respect to the distribution of early life history stage of flatfishes in this region. Knowledge of the faunal composition, abundance and distribution of larval flatfishes, such as members of Bothus, which have extended …

The Effects Of Petroleum Pollutants On Sea Urchins Reproduction And Development, Kellie C. Pelikan

HCNSO Student Theses and Dissertations

Disturbances, such as mass pollution events, threaten the health of vulnerable ecosystems. Recent media attention has focused on the devastating mass oil spills, but daily petroleum input from recreational and commercial ship bilge release has been overlooked. The focus of this study was the effect of petroleum products found in bilge water on fertilization success and larval viability of two sea urchin species, Lytechinus variegatus and Eucidaris tribuloides. Unlike other pollutant studies that have focused on sperm characteristics and concentrations, I chose to examine how egg integrity was compromised by petroleum products. Scanning electron microscopy revealed eggs were degraded when …

Habitat Utilization And Vertical Distribution Of The Great Barracuda Sphyraena Barracuda (Edwards 1771) In The Western North Atlantic Using Electronic Archival Tags, Noah R. Hansen, David W. Kerstetter

Marine & Environmental Sciences Faculty Articles

The Great Barracuda Sphyraena barracuda is a large predatory teleost commonly seen in the tropics of the Western North Atlantic. Using pop-up satellite archival tags (PSATs), two large Great Barracuda (101 and 104 cm FL) were tagged off South Florida for a 15-day deployment period. Great Barracuda 88094 traveled 471 km minimum straight-line distance (MSLD) over the deployment duration, while Great Barracuda 88095 traveled 1231 km MSLD. Great barracuda 88094 achieved a maximum depth of 145.2 m, while 88095 to a maximum depth of 186.9 m, although such movements were for short time durations. The data obtained indicate significant differences …

Semi-Automated Object-Based Classification Of Coral Reef Habitat Using Discrete Choice Models, Steven Saul, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

As for terrestrial remote sensing, pixel-based classifiers have traditionally been used to map coral reef habitats. For pixel-based classifiers, habitat assignment is based on the spectral or textural properties of each individual pixel in the scene. More recently, however, object-based classifications, those based on information from a set of contiguous pixels with similar properties, have found favor with the reef mapping community and are starting to be extensively deployed. Object-based classifiers have an advantage over pixel-based in that they are less compromised by the inevitable inhomogeneity in per-pixel spectral response caused, primarily, by variations in water depth. One aspect of …

Southeast Florida Large Coral Assessment 2015, Brian K. Walker, Katelyn Klug

Marine & Environmental Sciences Faculty Reports

The 2013 nearshore mapping project conducted by Walker and Klug expanded the previous knowledge on the amount, location, and species type of ecologically important large (>2 m) coral colonies in southeast Florida. They discovered over 110 previously undocumented large corals of which 60 were dead and 50 were still alive; 40 of the living corals were larger than 2 m wide and up to 5 m in diameter. Because these corals are the largest and oldest organisms on our reefs, they deserve special attention.

Currently there is unprecedented disease and bleaching in the northern portion of the Florida Reef …

A Comparison Of Macroinfaunal Community Structure Between Artificial Concrete Boulder Reefs And Adjacent Natural Reefs In Broward County, Florida, Amber C. Metallo

HCNSO Student Theses and Dissertations

Relatively little is known about either the biological (i.e., predation) or physical (i.e., current, sedimentation) effects that artificial reefs may have on surrounding benthic infaunal communities. Following deployment of artificial reefs (concrete boulders) between the first and second reefs off Fort Lauderdale, Florida, on 30 October 2009, sediment cores were taken at 4 distances along three replicate 10-m transects on 13 and 26 September 2013, and 24 and 25 May 2014 at each of four artificial reef sites and four of their adjacent natural reef sites using SCUBA. Infauna (>0.5mm) were extracted from the sediment and identified to the …

Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The assemblage composition, abundance, frequency of occurrence, and vertical distribution of juvenile reef fishes in the offshore pelagic habitat of the northern Gulf of Mexico are described. This study, a component of the NOAA-supported Offshore Nekton Sampling and Analysis Program, is the first to examine juvenile reef fish distributions across the oceanic northern Gulf of Mexico after the Deepwater Horizon oil spill. Results presented here are derived from a 3-month, spring/summer research cruise in 2011 on the M/V Meg Skansi. A 10-m² MOCNESS midwater trawl was used to sample 45 stations from the surface to a depth of …

Species Specific Microcalcification In Reef Building Caribbean Corals In Ocean Acidification Conditions, Ashley M. Dungan

HCNSO Student Theses and Dissertations

Coral reefs are one of the most economically important ecosystems on the planet. Despite their great contribution to the world economy, anthropogenic influence via carbon dioxide emissions is leading to unprecedented changes with concerns about subsequent negative impacts on reefs. Surface ocean pH has dropped 0.1 units in the past century; in spite of this rapid shift in oceanic chemistry, it is unclear if individual species or life stages of Caribbean stony corals will be more sensitive to ocean acidification (OA). Examined is the relationship between CO₂-induced seawater acidification, net calcification, photosynthesis, and respiration in three model Caribbean …

Intrinsic Challenges In Ancient Microbiome Reconstruction Using 16s Rrna Gene Amplification, Kirsten Ziesemer, Allison Mann, Krithivasan Sankaranarayanan, Hannes Schroeder, Andrew T. Ozga, Bernd W. Brandt, Egija Zaura, Andrea Waters-Rist, Menno Hoogland, Domingo C. Salazar-Garcia, Mark Aldenderfer, Camilla Speller, Jessica Hendy, Darlene A. Weston, Sandy J. Macdonald, Gavin H. Thomas, Matthew J. Collins, Cecil M. Lewis Jr., Corinne Hofman, Christina Warinner

Biology Faculty Articles

To date, characterization of ancient oral (dental calculus) and gut (coprolite) microbiota has been primarily accomplished through a metataxonomic approach involving targeted amplification of one or more variable regions in the 16S rRNA gene. Specifically, the V3 region (E. coli341–534) of this gene has been suggested as an excellent candidate for ancient DNA amplification and microbial community reconstruction. However, in practice this metataxonomic approach often produces highly skewed taxonomic frequency data. In this study, we use non-targeted (shotgun metagenomics) sequencing methods to better understand skewed microbial profiles observed in four ancient dental calculus specimens previously analyzed by amplicon …

The Genome Russia Project: Closing The Largest Remaining Omission On The World Genome Map, T. K. Oleksyk, Vladimir Brukhin, Stephen J. O'Brien

Biology Faculty Articles

We are witnessing the great era of genome exploration of the world, as genetic variation in people is being detailed across multiple varied world populations in an effort unprecedented since the first human genome sequence appeared in 2001. However, these efforts have yet to produce a comprehensive mapping of humankind, because important regions of modern human civilization remain unexplored. The Genome Russia Project promises to fill one of the largest gaps, the expansive regions across the Russian Federation, informing not just medical genomics of the territories, but also the migration settlements of historic and pre-historic Eurasian peoples.

Bacterial Community Dynamics In Marine Sponge Cinachyrella Kuekenthali Under Irradiance And Antibiotics, Nidhi Vijayan

HCNSO Student Theses and Dissertations

The Marine sponge Cinachyrella sp used in this study are commonly found in offshore South Florida and Caribbean waters and appeared to be resilient in closed system aquaculture. Marine sponges host diverse bacterial symbionts that are distinct compared to bacteria found in ambient seawater, however the roles of a large fraction of the bacterial community in marine sponges are unknown. Comparison of symbiotic to aposymbiotic (bacteria-free) sponges could provide information about interactions (metabolic and physiologic) between the bacteria and sponge. In this study, a single Cinachyrella kuekenthali individual was subsectioned into explants (N=240) in order to provide identical bacterial communities …

Reproductive Parameters Of Two Coastal Pelagic Fishes Off Southeast Florida: Blackfin Tuna, Thunnus Atlanticus, And Little Tunny, Euthynnus Alletteratus, Sonia Ahrabi-Nejad, David Kerstetter, Nancy J. Brown-Peterson, Patricia Blackwelder, Dorothy-Ellen A. Renegar

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.